Wall clock time and date at job start Tue Mar 31 2020 12:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46844 * 2 1 4 4 O 1.42900 * 109.47101 * 239.99682 * 2 1 3 5 5 C 1.52999 * 109.47060 * 119.99789 * 2 1 3 6 6 N 1.46902 * 109.47051 * 187.38949 * 5 2 1 7 7 C 1.46907 * 111.00110 * 81.30429 * 6 5 2 8 8 C 1.52998 * 109.47008 * 72.28880 * 7 6 5 9 9 C 1.53001 * 109.46874 * 174.94165 * 8 7 6 10 10 S 1.80997 * 109.47412 * 180.02562 * 9 8 7 11 11 C 1.76194 * 100.00073 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00456 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99669 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99935 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00220 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47455 * 89.99987 * 15 13 11 17 17 H 1.48506 * 109.46922 * 209.99878 * 15 13 11 18 18 H 1.48496 * 109.47062 * 329.99836 * 15 13 11 19 19 C 1.46900 * 111.00100 * 317.34697 * 6 5 2 20 20 C 1.53172 * 109.54039 * 292.97668 * 19 6 5 21 21 C 1.53095 * 109.16342 * 183.15151 * 20 19 6 22 22 O 1.42903 * 109.41549 * 57.60384 * 21 20 19 23 23 C 1.42906 * 114.09770 * 298.84910 * 22 21 20 24 24 C 1.53083 * 109.41721 * 61.15667 * 23 22 21 25 25 H 1.09003 * 109.47343 * 300.00317 * 1 2 3 26 26 H 1.09004 * 109.47370 * 60.00113 * 1 2 3 27 27 H 1.08998 * 109.47600 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46911 * 187.63401 * 3 2 1 29 29 H 1.09002 * 109.47235 * 307.62676 * 3 2 1 30 30 H 1.08992 * 109.47457 * 67.63308 * 3 2 1 31 31 H 0.96691 * 114.00243 * 305.64900 * 4 2 1 32 32 H 1.09000 * 109.47192 * 67.38649 * 5 2 1 33 33 H 1.09004 * 109.46749 * 307.38817 * 5 2 1 34 34 H 1.08992 * 109.46865 * 192.29189 * 7 6 5 35 35 H 1.09003 * 109.46551 * 312.28923 * 7 6 5 36 36 H 1.09004 * 109.47115 * 294.93211 * 8 7 6 37 37 H 1.08997 * 109.47143 * 54.93817 * 8 7 6 38 38 H 1.09003 * 109.46809 * 300.00142 * 9 8 7 39 39 H 1.09003 * 109.47287 * 59.99506 * 9 8 7 40 40 H 0.96999 * 120.00200 * 180.02562 * 14 13 11 41 41 H 1.09003 * 109.61421 * 53.19423 * 19 6 5 42 42 H 1.09003 * 109.52791 * 303.05616 * 20 19 6 43 43 H 1.08998 * 109.52473 * 63.25079 * 20 19 6 44 44 H 1.09003 * 109.47935 * 297.62941 * 21 20 19 45 45 H 1.09000 * 109.48491 * 177.59386 * 21 20 19 46 46 H 1.08991 * 109.48019 * 301.16652 * 23 22 21 47 47 H 1.09000 * 109.48552 * 181.14115 * 23 22 21 48 48 H 1.08998 * 109.52400 * 182.48573 * 24 23 22 49 49 H 1.09006 * 109.52768 * 62.29168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.4981 -0.5688 1.3416 7 6 3.8558 0.7323 1.9223 8 6 3.5327 0.7295 3.4178 9 6 4.0203 2.0360 4.0473 10 16 3.6388 2.0326 5.8166 11 6 4.2908 3.6044 6.2732 12 1 4.7514 4.2353 5.5276 13 6 4.2114 4.0323 7.5913 14 7 4.6981 5.2068 7.9324 15 14 3.4141 2.9413 8.8811 16 1 4.4434 2.0608 9.4896 17 1 2.8013 3.7885 9.9356 18 1 2.3637 2.1076 8.2434 19 6 4.1307 -0.7511 0.0284 20 6 3.9663 -2.2059 -0.4220 21 6 4.6957 -2.4053 -1.7531 22 8 6.0724 -2.0552 -1.5975 23 6 6.2893 -0.6932 -1.2231 24 6 5.6240 -0.4251 0.1293 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1213 1.4456 -0.1365 29 1 1.5695 1.9943 -0.8139 30 1 1.7923 1.9155 0.9503 31 1 1.6520 -1.5665 -1.2775 32 1 1.7885 -1.7799 1.1857 33 1 1.5727 -0.2893 2.1343 34 1 4.9214 0.9126 1.7811 35 1 3.2856 1.5194 1.4288 36 1 2.4553 0.6393 3.5566 37 1 4.0325 -0.1129 3.8959 38 1 5.0976 2.1264 3.9084 39 1 3.5205 2.8785 3.5691 40 1 4.6430 5.5057 8.8536 41 1 3.6612 -0.0889 -0.6990 42 1 4.3921 -2.8704 0.3298 43 1 2.9073 -2.4301 -0.5499 44 1 4.2430 -1.7701 -2.5145 45 1 4.6182 -3.4492 -2.0573 46 1 5.8575 -0.0356 -1.9775 47 1 7.3599 -0.5035 -1.1454 48 1 5.7505 0.6242 0.3958 49 1 6.0833 -1.0536 0.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531177578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:33 Heat of formation + Delta-G solvation = -100.157019 kcal Electronic energy + Delta-G solvation = -26310.812622 eV Core-core repulsion = 22784.993719 eV Total energy + Delta-G solvation = -3525.818903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68983 -39.37474 -37.28712 -34.71408 -34.64734 -33.68151 -32.10432 -31.51333 -29.03253 -28.04341 -27.52934 -26.38678 -24.31229 -23.70709 -21.96705 -21.54890 -20.50811 -19.62706 -17.92868 -17.50112 -17.11316 -16.97206 -16.82693 -16.38881 -16.11330 -15.90032 -15.62512 -15.34837 -15.12874 -14.91995 -14.55007 -14.42992 -13.86648 -13.55652 -13.51033 -13.30790 -13.21521 -13.11010 -13.05929 -12.84479 -12.75220 -12.45114 -12.35433 -12.21433 -12.09772 -12.03299 -11.84768 -11.64029 -11.48393 -11.17295 -11.03787 -11.01510 -10.97203 -10.56068 -10.45695 -8.99432 -8.78800 -8.52582 -6.23521 1.12239 1.31652 1.47060 1.74797 2.24266 2.68508 2.85552 2.90465 3.06232 3.28753 3.76103 3.86476 3.91612 3.95933 4.04099 4.08848 4.14148 4.23936 4.25644 4.38034 4.45076 4.49983 4.59642 4.63181 4.66252 4.69629 4.72475 4.77135 4.82695 4.86788 4.88962 4.91445 5.00012 5.01843 5.09100 5.20211 5.20627 5.23388 5.26571 5.29743 5.32910 5.56885 5.69143 6.09371 6.20606 6.30395 6.34403 6.85974 6.91674 8.60636 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.003055 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.172426 B = 9163.775541 C = 9972.770238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 C -0.157 4.157 4 O -0.557 6.557 5 C 0.028 3.972 6 N -0.533 5.533 7 C 0.026 3.974 8 C -0.079 4.079 9 C -0.067 4.067 10 S -0.220 6.220 11 C -0.522 4.522 12 H 0.049 0.951 13 C 0.037 3.963 14 N -0.923 5.923 15 Si 0.926 3.074 16 H -0.263 1.263 17 H -0.262 1.262 18 H -0.228 1.228 19 C 0.073 3.927 20 C -0.127 4.127 21 C 0.062 3.938 22 O -0.407 6.407 23 C 0.066 3.934 24 C -0.160 4.160 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.383 0.617 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.277 0.723 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.056 0.944 47 H 0.097 0.903 48 H 0.072 0.928 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 -16.193 -22.410 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.063 3.937 3 C -0.213 4.213 4 O -0.368 6.368 5 C -0.101 4.101 6 N -0.255 5.255 7 C -0.102 4.102 8 C -0.118 4.118 9 C -0.217 4.217 10 S 0.008 5.992 11 C -0.669 4.669 12 H 0.068 0.932 13 C -0.167 4.167 14 N -0.561 5.561 15 Si 0.747 3.253 16 H -0.187 1.187 17 H -0.187 1.187 18 H -0.152 1.152 19 C -0.034 4.034 20 C -0.165 4.165 21 C -0.015 4.015 22 O -0.326 6.326 23 C -0.011 4.011 24 C -0.198 4.198 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.235 0.765 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.115 0.885 48 H 0.090 0.910 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.247 -16.787 -21.407 28.153 hybrid contribution 0.003 1.664 -0.006 1.664 sum -7.244 -15.123 -21.413 27.197 Atomic orbital electron populations 1.22425 0.94457 1.03427 1.02854 1.21764 0.93718 0.92481 0.85690 1.22334 1.01752 0.94897 1.02337 1.86669 1.71007 1.33740 1.45407 1.22984 0.87843 1.01572 0.97676 1.62136 1.08552 1.30906 1.23919 1.22842 1.02051 0.91807 0.93536 1.21172 1.01190 0.94273 0.95186 1.23071 1.02705 1.01589 0.94285 1.83849 1.79709 1.25794 1.09893 1.22345 1.44050 1.02477 0.98058 0.93239 1.25787 0.94699 0.96212 1.00020 1.70040 1.45550 1.20540 1.20010 0.85708 0.80809 0.79559 0.79230 1.18733 1.18694 1.15164 1.22171 0.92504 0.98330 0.90351 1.22158 1.01758 0.95520 0.97016 1.22702 0.80908 1.01538 0.96321 1.87881 1.26675 1.28482 1.89591 1.22572 1.01194 0.82916 0.94395 1.22478 0.96991 1.01826 0.98548 0.91754 0.91877 0.90696 0.91596 0.91854 0.90915 0.76469 0.89385 0.90481 0.90817 0.90902 0.91400 0.91849 0.92093 0.91582 0.91406 0.88881 0.93197 0.89023 0.92270 0.87923 0.92573 0.88479 0.90975 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 8.76 71.98 0.63 -1.37 16 2 C 0.11 1.46 0.99 -10.79 -0.01 1.45 16 3 C -0.16 -2.69 6.81 71.98 0.49 -2.20 16 4 O -0.56 -6.82 8.44 -148.98 -1.26 -8.07 16 5 C 0.03 0.46 4.52 86.30 0.39 0.85 16 6 N -0.53 -10.86 4.53 -870.27 -3.94 -14.81 16 7 C 0.03 0.63 4.06 86.30 0.35 0.98 16 8 C -0.08 -2.34 5.21 30.59 0.16 -2.18 16 9 C -0.07 -2.58 5.67 71.98 0.41 -2.17 16 10 S -0.22 -10.69 19.41 -56.49 -1.10 -11.78 16 11 C -0.52 -31.05 10.04 67.95 0.68 -30.37 16 12 H 0.05 3.20 8.03 -2.92 -0.02 3.18 16 13 C 0.04 2.22 5.50 84.86 0.47 2.68 16 14 N -0.92 -57.27 13.97 21.65 0.30 -56.97 16 15 Si 0.93 44.45 27.74 68.60 1.90 46.35 16 16 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.23 -10.52 6.74 99.48 0.67 -9.85 16 19 C 0.07 1.35 1.14 45.03 0.05 1.40 16 20 C -0.13 -1.97 4.57 30.68 0.14 -1.83 16 21 C 0.06 0.94 6.84 72.01 0.49 1.44 16 22 O -0.41 -8.53 10.77 -148.98 -1.60 -10.14 16 23 C 0.07 1.23 6.84 72.01 0.49 1.72 16 24 C -0.16 -3.27 4.76 30.68 0.15 -3.13 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 1.25 4.50 -2.39 -0.01 1.24 16 29 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 30 H 0.07 1.35 7.02 -2.39 -0.02 1.33 16 31 H 0.38 2.36 7.31 -74.01 -0.54 1.82 16 32 H 0.09 1.24 7.49 -2.39 -0.02 1.22 16 33 H 0.08 1.44 6.31 -2.38 -0.02 1.42 16 34 H 0.07 1.84 5.33 -2.39 -0.01 1.83 16 35 H 0.07 1.63 3.30 -2.39 -0.01 1.62 16 36 H 0.07 1.94 6.71 -2.39 -0.02 1.92 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.09 1.73 3.49 -2.37 -0.01 1.72 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.99 4.63 -2.39 -0.01 0.98 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 47 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.07 1.48 6.19 -2.39 -0.01 1.46 16 49 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -68.68 365.98 -0.44 -69.12 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.37 Total: 19.03 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 4.89 Total: -32.73 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -3.64 Total: -71.78 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -2.86 Total: -18.21 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.10 Total: -11.78 kcal Total: -68.68 -0.44 -69.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531177578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.034 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds