Wall clock time and date at job start Tue Mar 31 2020 12:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47359 * 2 1 4 4 C 1.52994 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47216 * 304.99748 * 4 3 2 6 6 C 1.52997 * 109.47238 * 65.00034 * 4 3 2 7 7 C 1.53002 * 109.47274 * 185.00243 * 4 3 2 8 8 S 1.81397 * 109.47293 * 174.99870 * 7 4 3 9 9 O 1.42105 * 110.54189 * 68.37430 * 8 7 4 10 10 O 1.42099 * 110.54203 * 291.62169 * 8 7 4 11 11 N 1.65608 * 104.44917 * 179.97438 * 8 7 4 12 12 C 1.46927 * 120.63047 * 269.72011 * 11 8 7 13 13 C 1.52758 * 109.00682 * 233.58217 * 12 11 8 14 14 C 1.53039 * 109.38439 * 305.58958 * 13 12 11 15 15 C 1.53002 * 109.45762 * 181.26070 * 14 13 12 16 16 C 1.50697 * 109.47376 * 64.93356 * 15 14 13 17 17 H 1.08006 * 119.99643 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00426 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00384 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99753 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47263 * 89.99725 * 20 18 16 22 22 H 1.48501 * 109.47217 * 210.00085 * 20 18 16 23 23 H 1.48502 * 109.47058 * 329.99675 * 20 18 16 24 24 C 1.53041 * 109.53647 * 61.24252 * 14 13 12 25 25 C 1.46923 * 120.62912 * 89.99778 * 11 8 7 26 26 H 1.09003 * 109.46765 * 60.00016 * 1 2 3 27 27 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47228 * 300.00162 * 1 2 3 29 29 H 1.08999 * 109.47452 * 240.00278 * 2 1 3 30 30 H 1.09005 * 109.47405 * 119.99598 * 2 1 3 31 31 H 1.09003 * 109.47082 * 59.99749 * 3 2 1 32 32 H 1.08999 * 109.47130 * 300.00505 * 3 2 1 33 33 H 1.08998 * 109.47248 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.47336 * 299.99890 * 6 4 3 35 35 H 1.09002 * 109.46972 * 60.00163 * 6 4 3 36 36 H 1.09001 * 109.47069 * 54.99344 * 7 4 3 37 37 H 1.09001 * 109.46935 * 294.99890 * 7 4 3 38 38 H 1.08996 * 109.58448 * 353.42297 * 12 11 8 39 39 H 1.09005 * 109.57966 * 113.84390 * 12 11 8 40 40 H 1.08998 * 109.56153 * 185.55612 * 13 12 11 41 41 H 1.08997 * 109.35812 * 65.50160 * 13 12 11 42 42 H 1.08991 * 109.45902 * 301.21964 * 14 13 12 43 43 H 1.09005 * 109.46915 * 184.93133 * 15 14 13 44 44 H 1.09001 * 109.47380 * 304.93183 * 15 14 13 45 45 H 0.97002 * 119.99956 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.49946 * 178.68516 * 24 14 13 47 47 H 1.08997 * 109.52930 * 58.60218 * 24 14 13 48 48 H 1.08998 * 109.59009 * 246.15596 * 25 11 8 49 49 H 1.09011 * 109.58713 * 6.44266 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0801 2.8795 0.1251 8 16 5.8879 2.8686 0.2731 9 8 6.4855 2.4479 -0.9457 10 8 6.2831 2.3044 1.5159 11 7 6.3018 4.4672 0.3997 12 6 6.5982 5.2610 -0.8006 13 6 7.9660 5.9208 -0.6355 14 6 7.9901 6.7204 0.6692 15 6 9.3487 7.4075 0.8208 16 6 9.5217 8.4262 -0.2761 17 1 8.7409 8.5689 -1.0086 18 6 10.6767 9.1760 -0.3449 19 7 10.8279 10.0646 -1.3025 20 14 12.0275 8.9286 0.9215 21 1 12.9707 7.8866 0.4421 22 1 12.7595 10.2053 1.1204 23 1 11.4261 8.4972 2.2089 24 6 7.7611 5.7768 1.8521 25 6 6.3854 5.1169 1.7148 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.1694 0.8327 -1.3085 34 1 3.7161 -0.1906 -1.3979 35 1 3.7158 1.4227 -2.1498 36 1 3.6457 3.3430 1.0109 37 1 3.7913 3.4463 -0.7600 38 1 6.6109 4.6104 -1.6750 39 1 5.8370 6.0310 -0.9265 40 1 8.1524 6.5897 -1.4756 41 1 8.7371 5.1510 -0.6047 42 1 7.2027 7.4737 0.6479 43 1 9.3982 7.9049 1.7896 44 1 10.1420 6.6630 0.7537 45 1 11.6404 10.5923 -1.3505 46 1 7.8016 6.3432 2.7825 47 1 8.5341 5.0083 1.8601 48 1 5.6066 5.8749 1.7981 49 1 6.2554 4.3715 2.4996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568506128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:34 Heat of formation + Delta-G solvation = -109.934278 kcal Electronic energy + Delta-G solvation = -25606.978035 eV Core-core repulsion = 22080.735158 eV Total energy + Delta-G solvation = -3526.242877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.39147 -37.73019 -37.17757 -35.94846 -34.00092 -33.25257 -31.99586 -30.76827 -28.35861 -27.85225 -27.03522 -24.16179 -22.96818 -22.34310 -21.15671 -20.60303 -19.59226 -18.61658 -17.64843 -16.69758 -16.63204 -16.17645 -15.69825 -14.97407 -14.57531 -14.35447 -14.34042 -14.05182 -13.94277 -13.70952 -13.37493 -13.12737 -13.09740 -12.75288 -12.50144 -12.40590 -12.26206 -12.05977 -11.98779 -11.85039 -11.76826 -11.59269 -11.45384 -11.41594 -11.14633 -10.98855 -10.88152 -10.79626 -10.62680 -10.40217 -10.27930 -9.86252 -9.64110 -9.49152 -9.03174 -8.72718 -8.51355 -6.02368 -3.99388 0.17687 2.61894 3.32910 3.40307 3.44048 3.74414 3.99729 4.12011 4.37946 4.40404 4.47508 4.68279 4.74586 4.83692 4.92547 4.97798 5.16367 5.25298 5.27629 5.30160 5.36380 5.37745 5.40200 5.47994 5.51777 5.55206 5.64310 5.66014 5.75360 5.78448 5.80047 5.81634 5.94270 5.95705 6.01166 6.10358 6.34740 6.37415 6.61610 6.64766 6.87278 6.91702 7.06205 7.30495 7.47498 7.82461 8.55919 9.02343 9.61060 11.10839 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034833 B = 0.002615 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.651790 B =10705.577382 C =10831.332095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.080 4.080 5 H 0.083 0.917 6 C -0.182 4.182 7 C -0.629 4.629 8 S 2.604 3.396 9 O -0.951 6.951 10 O -0.958 6.958 11 N -0.996 5.996 12 C 0.116 3.884 13 C -0.117 4.117 14 C -0.070 4.070 15 C -0.011 4.011 16 C -0.514 4.514 17 H 0.074 0.926 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.129 4.129 25 C 0.119 3.881 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 -17.944 3.542 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.145 4.145 4 C -0.100 4.100 5 H 0.101 0.899 6 C -0.240 4.240 7 C -0.758 4.758 8 S 2.699 3.301 9 O -0.941 6.941 10 O -0.949 6.949 11 N -0.835 5.835 12 C -0.009 4.009 13 C -0.156 4.156 14 C -0.089 4.089 15 C -0.048 4.048 16 C -0.552 4.552 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.168 4.168 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.179 -18.523 3.476 26.889 hybrid contribution 0.180 0.507 0.577 0.788 sum -18.999 -18.016 4.052 26.495 Atomic orbital electron populations 1.21774 0.95767 1.01652 1.01842 1.21636 0.95949 0.96753 1.02465 1.21626 0.93111 0.97207 1.02604 1.20891 0.97766 0.91632 0.99733 0.89913 1.22358 1.03002 1.01943 0.96654 1.30808 1.28126 1.05252 1.11617 1.05159 0.77468 0.73158 0.74358 1.93575 1.73825 1.79958 1.46755 1.93573 1.80530 1.76366 1.44397 1.57636 1.83129 1.29609 1.13154 1.21553 0.98912 0.94959 0.85467 1.21774 0.94522 0.99292 1.00049 1.20972 1.00103 0.95452 0.92381 1.19639 0.92227 0.95587 0.97385 1.21138 1.03623 1.18602 1.11861 0.90837 1.25033 0.98268 0.94918 0.95395 1.69912 1.27479 1.24279 1.32740 0.86804 0.82356 0.77410 0.82837 1.20388 1.21550 1.19074 1.21999 0.95665 0.99317 0.99867 1.21504 0.99083 0.97303 0.82749 0.92723 0.92731 0.92747 0.91469 0.91820 0.91586 0.91428 0.90658 0.91105 0.91408 0.85151 0.84942 0.89456 0.91695 0.89242 0.92222 0.91748 0.96611 0.97058 0.92840 0.91171 0.91865 0.91646 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.15 0.37 -0.47 16 2 C -0.13 -0.80 5.69 -26.73 -0.15 -0.95 16 3 C -0.11 -0.72 4.68 -26.73 -0.13 -0.84 16 4 C -0.08 -0.66 2.39 -90.62 -0.22 -0.87 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.18 -1.57 8.64 37.16 0.32 -1.25 16 7 C -0.63 -5.22 5.62 37.16 0.21 -5.02 16 8 S 2.60 32.68 5.11 -107.50 -0.55 32.13 16 9 O -0.95 -14.35 14.33 -57.54 -0.82 -15.17 16 10 O -0.96 -14.64 16.59 -57.54 -0.95 -15.60 16 11 N -1.00 -13.13 3.23 -113.76 -0.37 -13.50 16 12 C 0.12 1.62 6.40 -3.93 -0.03 1.59 16 13 C -0.12 -2.10 5.17 -26.84 -0.14 -2.23 16 14 C -0.07 -1.32 2.10 -90.58 -0.19 -1.51 16 15 C -0.01 -0.26 3.52 -27.88 -0.10 -0.35 16 16 C -0.51 -14.18 8.94 -34.44 -0.31 -14.49 16 17 H 0.07 2.15 7.30 -52.48 -0.38 1.76 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 20 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16 25 C 0.12 1.53 6.43 -3.71 -0.02 1.50 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.78 5.61 -51.93 -0.29 0.49 16 34 H 0.07 0.50 6.56 -51.93 -0.34 0.15 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.13 0.86 8.14 -51.92 -0.42 0.43 16 37 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.09 1.15 6.85 -51.93 -0.36 0.79 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.74 6.91 -51.93 -0.36 1.38 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 1.01 6.86 -51.92 -0.36 0.65 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -33.49 381.77 -10.58 -44.07 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -9.13 Total: -2.64 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -0.62 Total: -25.32 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.41 Total: -40.38 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.78 Total: -30.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 32.68 SS G_CDS: -0.55 Total: 32.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.49 -10.58 -44.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568506128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.860 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds