Wall clock time and date at job start Tue Mar 31 2020 12:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47359 * 2 1 4 4 C 1.52994 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47216 * 304.99748 * 4 3 2 6 6 C 1.52997 * 109.47238 * 65.00034 * 4 3 2 7 7 C 1.53002 * 109.47274 * 185.00243 * 4 3 2 8 8 S 1.81397 * 109.47293 * 174.99870 * 7 4 3 9 9 O 1.42105 * 110.54189 * 68.37430 * 8 7 4 10 10 O 1.42099 * 110.54203 * 291.62169 * 8 7 4 11 11 N 1.65608 * 104.44917 * 179.97438 * 8 7 4 12 12 C 1.46927 * 120.63047 * 269.72011 * 11 8 7 13 13 C 1.52758 * 109.00682 * 233.58217 * 12 11 8 14 14 C 1.53039 * 109.38439 * 305.58958 * 13 12 11 15 15 C 1.53002 * 109.45762 * 181.26070 * 14 13 12 16 16 C 1.50697 * 109.47376 * 64.93356 * 15 14 13 17 17 H 1.08006 * 119.99643 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00426 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00384 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99753 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47263 * 89.99725 * 20 18 16 22 22 H 1.48501 * 109.47217 * 210.00085 * 20 18 16 23 23 H 1.48502 * 109.47058 * 329.99675 * 20 18 16 24 24 C 1.53041 * 109.53647 * 61.24252 * 14 13 12 25 25 C 1.46923 * 120.62912 * 89.99778 * 11 8 7 26 26 H 1.09003 * 109.46765 * 60.00016 * 1 2 3 27 27 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47228 * 300.00162 * 1 2 3 29 29 H 1.08999 * 109.47452 * 240.00278 * 2 1 3 30 30 H 1.09005 * 109.47405 * 119.99598 * 2 1 3 31 31 H 1.09003 * 109.47082 * 59.99749 * 3 2 1 32 32 H 1.08999 * 109.47130 * 300.00505 * 3 2 1 33 33 H 1.08998 * 109.47248 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.47336 * 299.99890 * 6 4 3 35 35 H 1.09002 * 109.46972 * 60.00163 * 6 4 3 36 36 H 1.09001 * 109.47069 * 54.99344 * 7 4 3 37 37 H 1.09001 * 109.46935 * 294.99890 * 7 4 3 38 38 H 1.08996 * 109.58448 * 353.42297 * 12 11 8 39 39 H 1.09005 * 109.57966 * 113.84390 * 12 11 8 40 40 H 1.08998 * 109.56153 * 185.55612 * 13 12 11 41 41 H 1.08997 * 109.35812 * 65.50160 * 13 12 11 42 42 H 1.08991 * 109.45902 * 301.21964 * 14 13 12 43 43 H 1.09005 * 109.46915 * 184.93133 * 15 14 13 44 44 H 1.09001 * 109.47380 * 304.93183 * 15 14 13 45 45 H 0.97002 * 119.99956 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.49946 * 178.68516 * 24 14 13 47 47 H 1.08997 * 109.52930 * 58.60218 * 24 14 13 48 48 H 1.08998 * 109.59009 * 246.15596 * 25 11 8 49 49 H 1.09011 * 109.58713 * 6.44266 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 4.0801 2.8795 0.1251 8 16 5.8879 2.8686 0.2731 9 8 6.4855 2.4479 -0.9457 10 8 6.2831 2.3044 1.5159 11 7 6.3018 4.4672 0.3997 12 6 6.5982 5.2610 -0.8006 13 6 7.9660 5.9208 -0.6355 14 6 7.9901 6.7204 0.6692 15 6 9.3487 7.4075 0.8208 16 6 9.5217 8.4262 -0.2761 17 1 8.7409 8.5689 -1.0086 18 6 10.6767 9.1760 -0.3449 19 7 10.8279 10.0646 -1.3025 20 14 12.0275 8.9286 0.9215 21 1 12.9707 7.8866 0.4421 22 1 12.7595 10.2053 1.1204 23 1 11.4261 8.4972 2.2089 24 6 7.7611 5.7768 1.8521 25 6 6.3854 5.1169 1.7148 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.1694 0.8327 -1.3085 34 1 3.7161 -0.1906 -1.3979 35 1 3.7158 1.4227 -2.1498 36 1 3.6457 3.3430 1.0109 37 1 3.7913 3.4463 -0.7600 38 1 6.6109 4.6104 -1.6750 39 1 5.8370 6.0310 -0.9265 40 1 8.1524 6.5897 -1.4756 41 1 8.7371 5.1510 -0.6047 42 1 7.2027 7.4737 0.6479 43 1 9.3982 7.9049 1.7896 44 1 10.1420 6.6630 0.7537 45 1 11.6404 10.5923 -1.3505 46 1 7.8016 6.3432 2.7825 47 1 8.5341 5.0083 1.8601 48 1 5.6066 5.8749 1.7981 49 1 6.2554 4.3715 2.4996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568506128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:33 Heat of formation + Delta-G solvation = -130.993802 kcal Electronic energy + Delta-G solvation = -25607.891244 eV Core-core repulsion = 22080.735158 eV Total energy + Delta-G solvation = -3527.156086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.65499 -38.36927 -38.16831 -36.99418 -35.66750 -33.90397 -33.75898 -31.96402 -30.02057 -28.63615 -27.53978 -25.77071 -24.21634 -22.92684 -22.65475 -21.21751 -20.95818 -19.69044 -18.94543 -18.55622 -17.52265 -17.13782 -16.37334 -16.31437 -15.72420 -15.40971 -15.30658 -15.22850 -15.08366 -14.75256 -14.55033 -14.47595 -14.22282 -13.79601 -13.64932 -13.39019 -13.31536 -13.16518 -13.05875 -12.86292 -12.66955 -12.57205 -12.54153 -12.39847 -12.27511 -12.04695 -11.98736 -11.97768 -11.70753 -11.66508 -11.36950 -11.34190 -11.15208 -11.00329 -10.87503 -10.72141 -9.84346 -8.25482 -6.26464 -0.75168 1.35192 1.36103 1.47607 1.64918 2.37391 2.88253 3.09972 3.13088 3.42971 3.71340 3.74187 3.85593 4.03837 4.06188 4.19392 4.30886 4.32717 4.36361 4.43192 4.45258 4.54377 4.59097 4.63556 4.70084 4.84890 4.86132 4.86359 4.91341 4.97526 4.98735 5.03810 5.04388 5.16491 5.21051 5.24022 5.25342 5.32313 5.33933 5.42133 5.45680 5.50688 5.51765 5.67574 5.77156 5.78281 6.35176 6.80804 7.37118 8.90662 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034833 B = 0.002615 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.651790 B =10705.577382 C =10831.332095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C -0.103 4.103 4 C -0.087 4.087 5 H 0.081 0.919 6 C -0.189 4.189 7 C -0.599 4.599 8 S 2.598 3.402 9 O -0.987 6.987 10 O -0.992 6.992 11 N -1.001 6.001 12 C 0.124 3.876 13 C -0.119 4.119 14 C -0.067 4.067 15 C -0.011 4.011 16 C -0.513 4.513 17 H 0.043 0.957 18 C 0.002 3.998 19 N -0.951 5.951 20 Si 0.942 3.058 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.248 1.248 24 C -0.129 4.129 25 C 0.118 3.882 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.067 0.933 43 H 0.019 0.981 44 H 0.005 0.995 45 H 0.263 0.737 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.096 0.904 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.356 -18.882 5.145 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C -0.142 4.142 4 C -0.107 4.107 5 H 0.099 0.901 6 C -0.246 4.246 7 C -0.733 4.733 8 S 2.698 3.302 9 O -0.977 6.977 10 O -0.983 6.983 11 N -0.839 5.839 12 C -0.001 4.001 13 C -0.158 4.158 14 C -0.086 4.086 15 C -0.049 4.049 16 C -0.552 4.552 17 H 0.061 0.939 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.766 3.234 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.172 1.172 24 C -0.168 4.168 25 C -0.006 4.006 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.066 0.934 48 H 0.114 0.886 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.596 -19.470 5.098 29.521 hybrid contribution 0.864 0.754 0.002 1.147 sum -20.732 -18.717 5.100 28.392 Atomic orbital electron populations 1.21772 0.95268 1.01929 1.02053 1.21663 0.96388 0.96572 1.02481 1.21618 0.91450 0.97664 1.03447 1.21011 0.99036 0.91270 0.99372 0.90065 1.22420 1.01578 1.03176 0.97420 1.30558 1.22172 1.06265 1.14266 1.05176 0.79564 0.72446 0.73031 1.93533 1.76149 1.80353 1.47670 1.93525 1.82429 1.76835 1.45499 1.57564 1.84048 1.29388 1.12886 1.21423 0.96889 0.95602 0.86224 1.21704 0.96923 0.98431 0.98752 1.20890 0.97398 0.96048 0.94247 1.19633 0.94959 0.94572 0.95689 1.21470 1.02579 1.19017 1.12096 0.93881 1.25939 1.01071 0.94849 0.97589 1.70057 1.28454 1.25797 1.34973 0.85779 0.79255 0.77458 0.80864 1.20035 1.21096 1.17160 1.21964 0.97473 0.98491 0.98861 1.21602 0.97809 0.98282 0.82930 0.92519 0.92506 0.92518 0.91456 0.91934 0.90616 0.90694 0.92915 0.89871 0.90611 0.82228 0.82599 0.88909 0.89127 0.91993 0.94073 0.91437 0.96258 0.97676 0.92780 0.89742 0.93399 0.88570 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.13 -1.29 5.69 30.59 0.17 -1.12 16 3 C -0.10 -1.01 4.68 30.59 0.14 -0.87 16 4 C -0.09 -1.17 2.39 -10.80 -0.03 -1.19 16 5 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 6 C -0.19 -2.91 8.64 71.98 0.62 -2.29 16 7 C -0.60 -7.72 5.62 71.98 0.40 -7.32 16 8 S 2.60 61.19 5.11 -56.49 -0.29 60.90 16 9 O -0.99 -29.59 14.33 -127.65 -1.83 -31.42 16 10 O -0.99 -29.28 16.59 -127.65 -2.12 -31.40 16 11 N -1.00 -24.34 3.23 -513.84 -1.66 -26.00 16 12 C 0.12 3.30 6.40 86.22 0.55 3.85 16 13 C -0.12 -4.32 5.17 30.53 0.16 -4.17 16 14 C -0.07 -2.49 2.10 -10.77 -0.02 -2.51 16 15 C -0.01 -0.52 3.52 29.85 0.10 -0.41 16 16 C -0.51 -29.06 8.94 25.60 0.23 -28.83 16 17 H 0.04 2.63 7.30 -2.91 -0.02 2.61 16 18 C 0.00 0.10 5.47 84.65 0.46 0.56 16 19 N -0.95 -59.81 13.96 21.44 0.30 -59.51 16 20 Si 0.94 45.25 27.47 68.60 1.88 47.13 16 21 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 24 C -0.13 -3.86 5.36 30.67 0.16 -3.70 16 25 C 0.12 2.70 6.43 86.36 0.56 3.26 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.64 6.56 -2.39 -0.02 0.63 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.07 5.61 -2.39 -0.01 1.06 16 34 H 0.08 1.03 6.56 -2.39 -0.02 1.02 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 2.38 6.85 -2.39 -0.02 2.36 16 39 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.06 2.54 6.91 -2.39 -0.02 2.53 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 44 H 0.00 0.23 7.57 -2.39 -0.02 0.22 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.10 2.04 6.86 -2.38 -0.02 2.02 16 Total: -1.00 -75.01 381.77 1.36 -73.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.83 Total: 11.96 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 4.24 Total: -45.32 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.36 Total: -85.51 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -3.95 Total: -62.82 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Atomic # 16 Polarization: 61.19 SS G_CDS: -0.29 Total: 60.90 kcal Total: -75.01 1.36 -73.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568506128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.341 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds