Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 C 1.53004 * 109.46924 * 299.04608 * 3 2 1 5 5 C 1.52998 * 109.46884 * 294.52515 * 4 3 2 6 6 C 1.52996 * 109.47238 * 59.04621 * 3 2 1 7 7 S 1.81406 * 109.47326 * 64.99844 * 6 3 2 8 8 O 1.42100 * 110.54468 * 291.62909 * 7 6 3 9 9 O 1.42111 * 110.53830 * 68.37635 * 7 6 3 10 10 N 1.65596 * 104.44939 * 179.97438 * 7 6 3 11 11 C 1.46921 * 120.63044 * 269.72138 * 10 7 6 12 12 C 1.53623 * 108.54172 * 126.37284 * 11 10 7 13 13 C 1.53040 * 109.24321 * 54.85509 * 12 11 10 14 14 C 1.53003 * 109.44962 * 178.49629 * 13 12 11 15 15 C 1.50697 * 109.47415 * 295.06243 * 14 13 12 16 16 H 1.08000 * 119.99553 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00109 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00095 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00013 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47461 * 89.99712 * 19 17 15 21 21 H 1.48496 * 109.47373 * 209.99796 * 19 17 15 22 22 H 1.48508 * 109.47135 * 329.99915 * 19 17 15 23 23 C 1.53038 * 109.53996 * 298.51096 * 13 12 11 24 24 C 1.46928 * 120.62628 * 90.00564 * 10 7 6 25 25 H 1.09003 * 109.46753 * 180.83639 * 1 2 3 26 26 H 1.08993 * 109.47168 * 300.83432 * 1 2 3 27 27 H 1.08998 * 109.47195 * 60.83810 * 1 2 3 28 28 H 1.08994 * 109.47226 * 239.99535 * 2 1 3 29 29 H 1.09004 * 109.46900 * 119.99867 * 2 1 3 30 30 H 1.08995 * 109.47104 * 179.04453 * 3 2 1 31 31 H 1.09007 * 109.46932 * 54.52443 * 4 3 2 32 32 H 1.08994 * 109.46897 * 174.52503 * 4 3 2 33 33 H 1.08992 * 109.47432 * 297.33455 * 5 4 3 34 34 H 1.09001 * 109.47192 * 57.33661 * 5 4 3 35 35 H 1.09005 * 109.46805 * 177.33196 * 5 4 3 36 36 H 1.08996 * 109.47449 * 185.00390 * 6 3 2 37 37 H 1.09000 * 109.47200 * 305.00004 * 6 3 2 38 38 H 1.09003 * 109.59035 * 246.20098 * 11 10 7 39 39 H 1.08998 * 109.59308 * 6.62940 * 11 10 7 40 40 H 1.08999 * 109.63713 * 294.86488 * 12 11 10 41 41 H 1.09004 * 109.43665 * 174.72150 * 12 11 10 42 42 H 1.09002 * 109.46052 * 58.52988 * 13 12 11 43 43 H 1.09000 * 109.46620 * 55.06432 * 14 13 12 44 44 H 1.09000 * 109.47146 * 175.05748 * 14 13 12 45 45 H 0.96996 * 120.00061 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.49638 * 301.41767 * 23 13 12 47 47 H 1.08993 * 109.50267 * 181.31680 * 23 13 12 48 48 H 1.09001 * 109.58681 * 353.36945 * 24 10 7 49 49 H 1.09001 * 109.58610 * 113.65579 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5497 2.1568 -1.2611 5 6 2.1884 1.5125 -2.4931 6 6 1.5105 2.1707 1.2370 7 16 2.2105 1.4142 2.7299 8 8 1.6937 0.1034 2.9139 9 8 3.6061 1.6695 2.8107 10 7 1.5631 2.2883 3.9785 11 6 2.2510 3.4798 4.4939 12 6 1.2668 4.6592 4.4737 13 6 0.0053 4.2767 5.2511 14 6 -0.9628 5.4614 5.2660 15 6 -0.3489 6.6023 6.0357 16 1 0.6334 6.4931 6.4711 17 6 -1.0412 7.7854 6.1839 18 7 -0.5056 8.7809 6.8561 19 14 -2.7404 7.9739 5.4314 20 1 -3.7672 7.5385 6.4119 21 1 -2.9687 9.3971 5.0745 22 1 -2.8363 7.1356 4.2092 23 6 -0.6667 3.0775 4.5784 24 6 0.2928 1.8834 4.5960 25 1 -0.3633 -1.0276 0.0150 26 1 -0.3633 0.5267 0.8823 27 1 -0.3633 0.5007 -0.8974 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1298 1.4426 0.0171 31 1 0.4649 2.0723 -1.3280 32 1 1.8300 3.2091 -1.2149 33 1 3.2701 1.6386 -2.4494 34 1 1.9471 0.4497 -2.5136 35 1 1.8029 1.9901 -3.3939 36 1 1.7995 3.2207 1.1921 37 1 0.4236 2.0940 1.2663 38 1 2.5845 3.2961 5.5153 39 1 3.1097 3.7078 3.8624 40 1 1.0012 4.8971 3.4437 41 1 1.7320 5.5278 4.9399 42 1 0.2747 4.0150 6.2744 43 1 -1.1633 5.7795 4.2429 44 1 -1.8962 5.1620 5.7428 45 1 -0.9925 9.6133 6.9601 46 1 -0.9140 3.3303 3.5473 47 1 -1.5775 2.8203 5.1189 48 1 -0.1409 1.0577 4.0318 49 1 0.4702 1.5697 5.6247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581008811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = -105.438127 kcal Electronic energy + Delta-G solvation = -26374.084119 eV Core-core repulsion = 22848.036210 eV Total energy + Delta-G solvation = -3526.047909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.41933 -38.15719 -37.16111 -35.95758 -34.02587 -32.03201 -31.63951 -30.79361 -30.01550 -28.24473 -25.27502 -24.13738 -23.75405 -22.99560 -21.16697 -19.79616 -19.32769 -18.69181 -17.67324 -16.77300 -16.57158 -16.23755 -15.73074 -15.38562 -14.47721 -14.37342 -14.17395 -13.93567 -13.79795 -13.50952 -13.46035 -13.19096 -13.13813 -12.56702 -12.52268 -12.44389 -12.32815 -12.13464 -12.00643 -11.93997 -11.78081 -11.58592 -11.40690 -11.11517 -11.02404 -10.94550 -10.89083 -10.73862 -10.68744 -10.40162 -10.34055 -9.83333 -9.74317 -9.53809 -9.09243 -8.73362 -8.56100 -6.06722 -4.04196 0.22275 2.62356 3.27308 3.35446 3.37661 3.74896 4.04794 4.20071 4.41758 4.42261 4.46644 4.73469 4.83835 4.95129 5.07079 5.10614 5.18856 5.20924 5.25019 5.30248 5.34335 5.42159 5.46208 5.49526 5.58071 5.60870 5.66447 5.70885 5.79249 5.82658 5.86444 5.92269 5.93462 5.95568 6.10514 6.17721 6.26895 6.31089 6.53511 6.57846 6.78874 6.84200 6.99309 7.22594 7.41343 7.77445 8.51506 8.98476 9.56259 11.06566 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.003534 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.440945 B = 7921.622924 C = 8508.760405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C -0.075 4.075 4 C -0.115 4.115 5 C -0.157 4.157 6 C -0.632 4.632 7 S 2.605 3.395 8 O -0.956 6.956 9 O -0.959 6.959 10 N -0.997 5.997 11 C 0.118 3.882 12 C -0.121 4.121 13 C -0.071 4.071 14 C -0.010 4.010 15 C -0.516 4.516 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.134 4.134 24 C 0.123 3.877 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -16.532 -15.320 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C -0.095 4.095 4 C -0.153 4.153 5 C -0.214 4.214 6 C -0.761 4.761 7 S 2.700 3.300 8 O -0.946 6.946 9 O -0.950 6.950 10 N -0.835 5.835 11 C -0.007 4.007 12 C -0.160 4.160 13 C -0.089 4.089 14 C -0.047 4.047 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.173 4.173 24 C -0.002 4.002 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.645 -17.073 -15.149 23.114 hybrid contribution -1.447 0.964 -0.582 1.833 sum 2.198 -16.110 -15.731 22.623 Atomic orbital electron populations 1.21844 0.95148 1.02150 1.01894 1.22016 0.97563 0.95383 1.03958 1.20939 1.00451 0.94973 0.93174 1.21578 1.01186 0.99522 0.93006 1.21859 1.00935 1.01125 0.97497 1.30850 1.14061 1.13264 1.17930 1.05131 0.74723 0.74714 0.75473 1.93560 1.81070 1.35318 1.84635 1.93581 1.29728 1.85817 1.85859 1.57653 1.34365 1.42484 1.48977 1.21705 0.94688 0.84086 1.00234 1.22008 0.96108 0.97088 1.00767 1.20961 0.95332 0.94412 0.98219 1.19630 0.94613 0.93677 0.96795 1.21147 1.04592 0.96437 1.33251 0.90795 1.25033 0.97749 0.95917 0.94843 1.69910 1.38319 1.04472 1.41586 0.86812 0.85223 0.77117 0.80266 1.20397 1.21523 1.19154 1.22091 0.98070 0.95730 1.01420 1.21467 0.82739 0.96955 0.99069 0.92267 0.92483 0.92308 0.90438 0.90201 0.89961 0.91065 0.91522 0.92584 0.92269 0.92572 0.84805 0.84596 0.90967 0.89886 0.92499 0.89231 0.91618 0.96753 0.97086 0.92794 0.92206 0.91111 0.89948 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.22 37.16 0.34 -0.96 16 2 C -0.15 -1.37 5.16 -26.73 -0.14 -1.51 16 3 C -0.08 -0.68 2.16 -90.62 -0.20 -0.88 16 4 C -0.11 -0.90 5.21 -26.73 -0.14 -1.04 16 5 C -0.16 -1.07 9.74 37.16 0.36 -0.71 16 6 C -0.63 -6.09 5.38 37.16 0.20 -5.89 16 7 S 2.61 33.06 5.06 -107.50 -0.54 32.52 16 8 O -0.96 -13.58 14.49 -57.54 -0.83 -14.42 16 9 O -0.96 -14.92 16.71 -57.54 -0.96 -15.88 16 10 N -1.00 -13.14 3.21 -113.27 -0.36 -13.51 16 11 C 0.12 1.66 6.34 -3.49 -0.02 1.63 16 12 C -0.12 -1.98 5.21 -26.39 -0.14 -2.12 16 13 C -0.07 -1.25 2.10 -90.58 -0.19 -1.44 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.52 -13.88 8.94 -34.44 -0.31 -14.19 16 16 H 0.07 2.13 7.30 -52.49 -0.38 1.74 16 17 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 19 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 C -0.13 -1.89 5.36 -26.61 -0.14 -2.04 16 24 C 0.12 1.55 6.31 -3.71 -0.02 1.53 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.50 6.26 -51.93 -0.32 0.17 16 27 H 0.06 0.43 6.38 -51.93 -0.33 0.10 16 28 H 0.08 0.58 6.48 -51.93 -0.34 0.24 16 29 H 0.08 0.84 5.67 -51.93 -0.29 0.54 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.53 6.20 -51.92 -0.32 0.21 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.38 6.44 -51.93 -0.33 0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.14 1.16 6.13 -51.92 -0.32 0.84 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.08 7.09 -51.93 -0.37 0.72 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 44 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 0.91 7.10 -51.93 -0.37 0.55 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -32.41 374.51 -10.29 -42.70 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.75 Total: -0.96 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -0.59 Total: -26.17 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.41 Total: -39.94 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.80 Total: -30.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: 33.06 SS G_CDS: -0.54 Total: 32.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.41 -10.29 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581008811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.743 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds