Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 C 1.53004 * 109.46924 * 299.04608 * 3 2 1 5 5 C 1.52998 * 109.46884 * 294.52515 * 4 3 2 6 6 C 1.52996 * 109.47238 * 59.04621 * 3 2 1 7 7 S 1.81406 * 109.47326 * 64.99844 * 6 3 2 8 8 O 1.42100 * 110.54468 * 291.62909 * 7 6 3 9 9 O 1.42111 * 110.53830 * 68.37635 * 7 6 3 10 10 N 1.65596 * 104.44939 * 179.97438 * 7 6 3 11 11 C 1.46921 * 120.63044 * 269.72138 * 10 7 6 12 12 C 1.53623 * 108.54172 * 126.37284 * 11 10 7 13 13 C 1.53040 * 109.24321 * 54.85509 * 12 11 10 14 14 C 1.53003 * 109.44962 * 178.49629 * 13 12 11 15 15 C 1.50697 * 109.47415 * 295.06243 * 14 13 12 16 16 H 1.08000 * 119.99553 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00109 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00095 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00013 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47461 * 89.99712 * 19 17 15 21 21 H 1.48496 * 109.47373 * 209.99796 * 19 17 15 22 22 H 1.48508 * 109.47135 * 329.99915 * 19 17 15 23 23 C 1.53038 * 109.53996 * 298.51096 * 13 12 11 24 24 C 1.46928 * 120.62628 * 90.00564 * 10 7 6 25 25 H 1.09003 * 109.46753 * 180.83639 * 1 2 3 26 26 H 1.08993 * 109.47168 * 300.83432 * 1 2 3 27 27 H 1.08998 * 109.47195 * 60.83810 * 1 2 3 28 28 H 1.08994 * 109.47226 * 239.99535 * 2 1 3 29 29 H 1.09004 * 109.46900 * 119.99867 * 2 1 3 30 30 H 1.08995 * 109.47104 * 179.04453 * 3 2 1 31 31 H 1.09007 * 109.46932 * 54.52443 * 4 3 2 32 32 H 1.08994 * 109.46897 * 174.52503 * 4 3 2 33 33 H 1.08992 * 109.47432 * 297.33455 * 5 4 3 34 34 H 1.09001 * 109.47192 * 57.33661 * 5 4 3 35 35 H 1.09005 * 109.46805 * 177.33196 * 5 4 3 36 36 H 1.08996 * 109.47449 * 185.00390 * 6 3 2 37 37 H 1.09000 * 109.47200 * 305.00004 * 6 3 2 38 38 H 1.09003 * 109.59035 * 246.20098 * 11 10 7 39 39 H 1.08998 * 109.59308 * 6.62940 * 11 10 7 40 40 H 1.08999 * 109.63713 * 294.86488 * 12 11 10 41 41 H 1.09004 * 109.43665 * 174.72150 * 12 11 10 42 42 H 1.09002 * 109.46052 * 58.52988 * 13 12 11 43 43 H 1.09000 * 109.46620 * 55.06432 * 14 13 12 44 44 H 1.09000 * 109.47146 * 175.05748 * 14 13 12 45 45 H 0.96996 * 120.00061 * 179.97438 * 18 17 15 46 46 H 1.08999 * 109.49638 * 301.41767 * 23 13 12 47 47 H 1.08993 * 109.50267 * 181.31680 * 23 13 12 48 48 H 1.09001 * 109.58681 * 353.36945 * 24 10 7 49 49 H 1.09001 * 109.58610 * 113.65579 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5497 2.1568 -1.2611 5 6 2.1884 1.5125 -2.4931 6 6 1.5105 2.1707 1.2370 7 16 2.2105 1.4142 2.7299 8 8 1.6937 0.1034 2.9139 9 8 3.6061 1.6695 2.8107 10 7 1.5631 2.2883 3.9785 11 6 2.2510 3.4798 4.4939 12 6 1.2668 4.6592 4.4737 13 6 0.0053 4.2767 5.2511 14 6 -0.9628 5.4614 5.2660 15 6 -0.3489 6.6023 6.0357 16 1 0.6334 6.4931 6.4711 17 6 -1.0412 7.7854 6.1839 18 7 -0.5056 8.7809 6.8561 19 14 -2.7404 7.9739 5.4314 20 1 -3.7672 7.5385 6.4119 21 1 -2.9687 9.3971 5.0745 22 1 -2.8363 7.1356 4.2092 23 6 -0.6667 3.0775 4.5784 24 6 0.2928 1.8834 4.5960 25 1 -0.3633 -1.0276 0.0150 26 1 -0.3633 0.5267 0.8823 27 1 -0.3633 0.5007 -0.8974 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1298 1.4426 0.0171 31 1 0.4649 2.0723 -1.3280 32 1 1.8300 3.2091 -1.2149 33 1 3.2701 1.6386 -2.4494 34 1 1.9471 0.4497 -2.5136 35 1 1.8029 1.9901 -3.3939 36 1 1.7995 3.2207 1.1921 37 1 0.4236 2.0940 1.2663 38 1 2.5845 3.2961 5.5153 39 1 3.1097 3.7078 3.8624 40 1 1.0012 4.8971 3.4437 41 1 1.7320 5.5278 4.9399 42 1 0.2747 4.0150 6.2744 43 1 -1.1633 5.7795 4.2429 44 1 -1.8962 5.1620 5.7428 45 1 -0.9925 9.6133 6.9601 46 1 -0.9140 3.3303 3.5473 47 1 -1.5775 2.8203 5.1189 48 1 -0.1409 1.0577 4.0318 49 1 0.4702 1.5697 5.6247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581008811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = -125.415972 kcal Electronic energy + Delta-G solvation = -26374.950424 eV Core-core repulsion = 22848.036210 eV Total energy + Delta-G solvation = -3526.914213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.64368 -38.84017 -38.21300 -37.02273 -35.64916 -33.87725 -32.21546 -31.94833 -30.72814 -29.93885 -26.06197 -25.62422 -24.34363 -24.18558 -22.68190 -21.01069 -20.12352 -19.77917 -18.92279 -18.58028 -17.49744 -17.21304 -16.50164 -16.32894 -16.12489 -15.49978 -15.29317 -15.18543 -14.85259 -14.74765 -14.47835 -14.27534 -14.14324 -13.81103 -13.63306 -13.45745 -13.27793 -13.18049 -13.11746 -12.95527 -12.79900 -12.61765 -12.49638 -12.33100 -12.20690 -12.07703 -11.99233 -11.80999 -11.67604 -11.61057 -11.33903 -11.29581 -11.16722 -10.96424 -10.84331 -10.68905 -9.86796 -8.22859 -6.24728 -0.74688 1.38447 1.39665 1.50916 1.62026 2.40130 2.82567 3.11265 3.13181 3.43814 3.68816 3.70970 3.83141 4.04822 4.06319 4.14888 4.30388 4.34450 4.39345 4.44696 4.51543 4.52212 4.57825 4.62873 4.64775 4.82304 4.83825 4.84542 4.89215 4.98290 5.04057 5.08208 5.11058 5.23381 5.24560 5.26174 5.27588 5.31892 5.33873 5.37408 5.43451 5.52355 5.59393 5.68736 5.79200 5.80820 6.38141 6.83934 7.39135 8.93797 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.003534 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.440945 B = 7921.622924 C = 8508.760405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.156 4.156 3 C -0.081 4.081 4 C -0.113 4.113 5 C -0.158 4.158 6 C -0.614 4.614 7 S 2.606 3.394 8 O -0.973 6.973 9 O -0.994 6.994 10 N -0.999 5.999 11 C 0.124 3.876 12 C -0.116 4.116 13 C -0.070 4.070 14 C -0.008 4.008 15 C -0.517 4.517 16 H 0.036 0.964 17 C 0.000 4.000 18 N -0.956 5.956 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.243 1.243 23 C -0.126 4.126 24 C 0.122 3.878 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -17.893 -17.938 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C -0.101 4.101 4 C -0.152 4.152 5 C -0.216 4.216 6 C -0.747 4.747 7 S 2.704 3.296 8 O -0.964 6.964 9 O -0.985 6.985 10 N -0.837 5.837 11 C -0.001 4.001 12 C -0.155 4.155 13 C -0.089 4.089 14 C -0.045 4.045 15 C -0.555 4.555 16 H 0.054 0.946 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.771 3.229 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.166 1.166 23 C -0.165 4.165 24 C -0.003 4.003 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.123 0.877 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.782 -18.481 -17.736 25.677 hybrid contribution -0.776 1.370 0.237 1.592 sum 1.006 -17.111 -17.500 24.495 Atomic orbital electron populations 1.21900 0.94547 1.02531 1.02475 1.22056 0.98179 0.95312 1.03789 1.21046 1.00489 0.95140 0.93411 1.21587 1.01672 0.99441 0.92460 1.21879 1.00869 1.01458 0.97373 1.30702 1.14920 1.13642 1.15408 1.05008 0.73996 0.74392 0.76166 1.93535 1.81015 1.36522 1.85311 1.93536 1.32124 1.86174 1.86659 1.57607 1.34479 1.41810 1.49775 1.21538 0.94411 0.83692 1.00465 1.21900 0.95969 0.96852 1.00815 1.20891 0.95228 0.94518 0.98287 1.19605 0.95409 0.93536 0.95967 1.21519 1.03209 0.98079 1.32690 0.94590 1.26001 1.02366 0.95634 0.95611 1.70079 1.40432 1.05288 1.43921 0.85714 0.79685 0.77268 0.80257 1.19645 1.21650 1.16628 1.22015 0.98343 0.94222 1.01942 1.21542 0.82206 0.96939 0.99631 0.92104 0.92683 0.90913 0.89087 0.92008 0.90194 0.90306 0.91388 0.92726 0.91805 0.91835 0.83346 0.82677 0.91491 0.88897 0.91219 0.92492 0.93252 0.96115 0.96620 0.92855 0.90595 0.89970 0.87734 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.22 71.98 0.66 -1.54 16 2 C -0.16 -2.46 5.16 30.60 0.16 -2.31 16 3 C -0.08 -1.25 2.16 -10.79 -0.02 -1.28 16 4 C -0.11 -1.42 5.21 30.59 0.16 -1.26 16 5 C -0.16 -1.74 9.74 71.98 0.70 -1.04 16 6 C -0.61 -10.05 5.38 71.98 0.39 -9.66 16 7 S 2.61 62.11 5.06 -56.49 -0.29 61.82 16 8 O -0.97 -26.25 14.49 -127.65 -1.85 -28.10 16 9 O -0.99 -30.34 16.71 -127.65 -2.13 -32.47 16 10 N -1.00 -24.72 3.21 -512.28 -1.65 -26.37 16 11 C 0.12 3.44 6.34 86.51 0.55 3.99 16 12 C -0.12 -3.78 5.21 30.82 0.16 -3.62 16 13 C -0.07 -2.44 2.10 -10.77 -0.02 -2.46 16 14 C -0.01 -0.34 3.52 29.85 0.10 -0.23 16 15 C -0.52 -28.38 8.94 25.60 0.23 -28.15 16 16 H 0.04 2.18 7.30 -2.91 -0.02 2.16 16 17 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 18 N -0.96 -59.28 13.96 21.45 0.30 -58.98 16 19 Si 0.95 43.12 27.47 68.60 1.88 45.01 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 23 C -0.13 -3.20 5.36 30.67 0.16 -3.04 16 24 C 0.12 2.79 6.31 86.36 0.55 3.33 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.78 6.26 -2.39 -0.01 0.76 16 27 H 0.07 0.80 6.38 -2.39 -0.02 0.79 16 28 H 0.09 1.15 6.48 -2.39 -0.02 1.14 16 29 H 0.06 1.21 5.67 -2.38 -0.01 1.20 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 0.88 6.20 -2.38 -0.01 0.86 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.64 6.44 -2.39 -0.02 0.62 16 35 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.16 2.01 6.13 -2.39 -0.01 2.00 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 2.39 7.09 -2.39 -0.02 2.37 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 2.20 6.91 -2.38 -0.02 2.19 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 44 H 0.02 0.66 7.57 -2.39 -0.02 0.64 16 45 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.10 1.98 7.10 -2.39 -0.02 1.97 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.23 374.51 1.36 -69.88 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.85 Total: 16.02 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 4.24 Total: -46.81 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.35 Total: -85.35 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -3.98 Total: -60.57 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal Atomic # 16 Polarization: 62.11 SS G_CDS: -0.29 Total: 61.82 kcal Total: -71.23 1.36 -69.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581008811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.539 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds