Wall clock time and date at job start Tue Mar 31 2020 11:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 C 1.52996 * 109.46956 * 239.99968 * 2 1 3 5 5 C 1.50695 * 109.47467 * 60.00043 * 4 2 1 6 6 H 1.07997 * 119.99581 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00228 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00030 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99696 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47332 * 89.99665 * 9 7 5 11 11 H 1.48504 * 109.47028 * 209.99817 * 9 7 5 12 12 H 1.48496 * 109.47430 * 329.99640 * 9 7 5 13 13 C 1.52996 * 109.47050 * 119.99801 * 2 1 3 14 14 N 1.46502 * 109.47312 * 300.00106 * 13 2 1 15 15 C 1.34784 * 120.00119 * 180.02562 * 14 13 2 16 16 O 1.21271 * 119.99851 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99575 * 179.97438 * 15 14 13 18 18 C 1.50708 * 109.47053 * 179.97438 * 17 15 14 19 19 C 1.38261 * 119.97948 * 270.02600 * 18 17 15 20 20 C 1.38295 * 120.04146 * 179.97438 * 19 18 17 21 21 C 1.37831 * 119.96871 * 359.96675 * 20 19 18 22 22 C 1.38773 * 120.01371 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.01385 * 0.02562 * 22 21 20 24 24 C 1.51082 * 107.29752 * 180.02562 * 22 21 20 25 25 O 1.43951 * 105.95349 * 342.32532 * 24 22 21 26 26 C 1.43941 * 104.94972 * 28.44560 * 25 24 22 27 27 H 1.09005 * 109.47096 * 300.00258 * 1 2 3 28 28 H 1.08996 * 109.47193 * 59.99691 * 1 2 3 29 29 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47142 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46597 * 299.99961 * 3 2 1 32 32 H 1.09001 * 109.47089 * 59.99375 * 3 2 1 33 33 H 1.09002 * 109.46835 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46806 * 299.99462 * 4 2 1 35 35 H 0.97003 * 119.99695 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47176 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47619 * 59.99982 * 13 2 1 38 38 H 0.97004 * 120.00008 * 359.97438 * 14 13 2 39 39 H 1.08995 * 109.47590 * 59.99909 * 17 15 14 40 40 H 1.08998 * 109.47556 * 299.99555 * 17 15 14 41 41 H 1.08005 * 119.97619 * 359.97172 * 19 18 17 42 42 H 1.08004 * 120.04045 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.03936 * 179.97438 * 23 22 21 44 44 H 1.09005 * 110.15139 * 223.20795 * 24 22 21 45 45 H 1.08990 * 110.15650 * 101.44695 * 24 22 21 46 46 H 1.09002 * 110.15431 * 90.68060 * 26 25 24 47 47 H 1.09004 * 110.15347 * 212.36657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 1.4324 0.1379 -4.8057 9 14 2.9451 -2.0005 -3.9032 10 1 2.0865 -3.2112 -3.9491 11 1 3.7375 -1.9077 -5.1558 12 1 3.8651 -2.0899 -2.7410 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8777 -0.4907 3.6696 16 8 2.5749 -1.4767 3.7809 17 6 1.3757 0.2201 4.8999 18 6 1.8780 -0.4904 6.1305 19 6 1.1303 -1.5074 6.6946 20 6 1.5902 -2.1606 7.8235 21 6 2.7949 -1.7976 8.3861 22 6 3.5458 -0.7770 7.8203 23 6 3.0865 -0.1247 6.6947 24 6 4.7945 -0.6212 8.6566 25 8 4.5158 -1.2739 9.9090 26 6 3.5599 -2.3010 9.5879 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2491 35 1 1.6667 -0.1935 -5.6868 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.9942 0.7583 2.3564 39 1 0.2858 0.2202 4.9003 40 1 1.7391 1.2477 4.8996 41 1 0.1865 -1.7920 6.2532 42 1 1.0059 -2.9548 8.2643 43 1 3.6704 0.6700 6.2542 44 1 5.0060 0.4352 8.8224 45 1 5.6394 -1.1011 8.1629 46 1 4.0748 -3.2300 9.3432 47 1 2.8812 -2.4578 10.4263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583432155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:37 Heat of formation + Delta-G solvation = -66.770439 kcal Electronic energy + Delta-G solvation = -25788.775517 eV Core-core repulsion = 22128.960413 eV Total energy + Delta-G solvation = -3659.815104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99446 -39.75648 -37.90170 -37.07518 -33.68520 -33.05704 -32.10469 -31.77429 -29.35677 -27.96800 -27.54925 -26.60272 -26.01846 -24.40918 -22.55142 -22.01019 -21.26089 -20.17987 -18.32673 -17.08041 -16.92545 -16.76150 -16.66610 -16.42260 -15.90500 -15.38374 -15.01041 -14.56568 -14.23863 -14.13437 -13.80688 -13.75042 -13.45831 -13.38836 -12.88196 -12.79060 -12.76220 -12.58976 -12.29694 -12.24570 -12.02104 -11.65093 -11.27883 -11.16454 -11.12649 -11.03859 -10.65237 -10.52889 -10.38664 -10.00901 -9.96947 -9.77034 -9.50175 -9.09935 -9.02718 -8.85039 -8.70290 -8.56163 -6.06911 -4.04293 0.92416 1.09008 2.70212 3.16680 3.29457 3.37656 3.41591 3.57498 3.59605 3.87847 4.30406 4.43247 4.44429 4.62603 4.85243 4.92042 5.02476 5.04494 5.06745 5.16217 5.22494 5.23218 5.25559 5.36161 5.38869 5.48892 5.59503 5.61340 5.77803 5.99932 6.02763 6.06252 6.07596 6.14561 6.26012 6.27363 6.38147 6.43827 6.55324 6.64760 6.65048 6.86349 6.97660 7.01361 7.16793 7.33158 7.61594 7.76569 8.31773 8.50001 8.96924 9.55787 11.05736 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.002206 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.122661 B =12686.742383 C =12980.120077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.126 3.874 14 N -0.722 5.722 15 C 0.508 3.492 16 O -0.538 6.538 17 C -0.105 4.105 18 C -0.054 4.054 19 C -0.099 4.099 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.132 4.132 23 C -0.078 4.078 24 C 0.092 3.908 25 O -0.363 6.363 26 C 0.092 3.908 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.018 0.982 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 0.245 26.920 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.374 5.374 15 C 0.294 3.706 16 O -0.415 6.415 17 C -0.145 4.145 18 C -0.055 4.055 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.096 4.096 24 C 0.015 3.985 25 O -0.282 6.282 26 C 0.016 3.984 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.235 0.765 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.596 -0.428 27.002 27.012 hybrid contribution 0.183 -0.555 -0.707 0.917 sum 0.778 -0.983 26.295 26.325 Atomic orbital electron populations 1.21781 0.94798 1.01253 1.00795 1.20687 0.95813 0.95905 0.93917 1.21776 1.00453 0.95589 1.00793 1.19592 0.96283 0.95493 0.92643 1.21068 1.31845 1.13382 0.88601 0.90393 1.25004 0.95711 0.96763 0.96003 1.69900 1.45878 1.40565 0.97887 0.86856 0.81329 0.83904 0.77665 1.20378 1.21484 1.19011 1.21631 0.98850 0.96008 0.83187 1.46184 1.53398 1.32081 1.05736 1.20420 0.80847 0.84918 0.84464 1.90724 1.37712 1.26234 1.86796 1.20700 1.02889 1.00279 0.90583 1.19243 0.94645 0.96548 0.95035 1.20972 1.00134 0.95239 0.95357 1.20272 0.94619 0.99953 0.96089 1.21008 0.96090 0.97936 0.98667 1.20983 0.97075 0.97951 0.97264 1.20186 0.95193 0.99797 0.94424 1.21744 0.94228 0.99099 0.83394 1.89070 1.61764 1.49006 1.28336 1.21728 0.90236 0.91294 0.95178 0.94990 0.90850 0.93423 0.93414 0.90852 0.94982 0.96391 0.96842 0.92778 0.91901 0.91896 0.76496 0.87765 0.87829 0.85472 0.85689 0.85789 0.88495 0.90415 0.90541 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 5 C -0.51 -13.48 8.20 -34.44 -0.28 -13.77 16 6 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 9 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.13 2.04 4.56 -4.04 -0.02 2.02 16 14 N -0.72 -9.24 4.96 -60.30 -0.30 -9.53 16 15 C 0.51 6.68 7.82 -10.99 -0.09 6.59 16 16 O -0.54 -9.44 16.03 5.56 0.09 -9.35 16 17 C -0.10 -0.93 5.83 -29.03 -0.17 -1.10 16 18 C -0.05 -0.57 4.38 -104.59 -0.46 -1.03 16 19 C -0.10 -1.00 9.70 -39.55 -0.38 -1.38 16 20 C -0.09 -0.87 10.03 -39.71 -0.40 -1.27 16 21 C -0.14 -1.39 6.33 -104.38 -0.66 -2.05 16 22 C -0.13 -1.39 6.33 -104.34 -0.66 -2.05 16 23 C -0.08 -0.82 9.70 -39.66 -0.38 -1.20 16 24 C 0.09 0.83 7.63 36.19 0.28 1.10 16 25 O -0.36 -3.74 11.72 -35.23 -0.41 -4.15 16 26 C 0.09 0.79 7.63 36.19 0.28 1.06 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.40 4.16 6.16 -40.82 -0.25 3.91 16 39 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -32.93 375.85 -8.86 -41.79 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.39 Total: 1.39 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.62 Total: -16.32 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.47 Total: -35.73 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.32 Total: -13.49 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.93 -8.86 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583432155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.978 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds