Wall clock time and date at job start Tue Mar 31 2020 11:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 C 1.52996 * 109.46956 * 239.99968 * 2 1 3 5 5 C 1.50695 * 109.47467 * 60.00043 * 4 2 1 6 6 H 1.07997 * 119.99581 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00228 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00030 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99696 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47332 * 89.99665 * 9 7 5 11 11 H 1.48504 * 109.47028 * 209.99817 * 9 7 5 12 12 H 1.48496 * 109.47430 * 329.99640 * 9 7 5 13 13 C 1.52996 * 109.47050 * 119.99801 * 2 1 3 14 14 N 1.46502 * 109.47312 * 300.00106 * 13 2 1 15 15 C 1.34784 * 120.00119 * 180.02562 * 14 13 2 16 16 O 1.21271 * 119.99851 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99575 * 179.97438 * 15 14 13 18 18 C 1.50708 * 109.47053 * 179.97438 * 17 15 14 19 19 C 1.38261 * 119.97948 * 270.02600 * 18 17 15 20 20 C 1.38295 * 120.04146 * 179.97438 * 19 18 17 21 21 C 1.37831 * 119.96871 * 359.96675 * 20 19 18 22 22 C 1.38773 * 120.01371 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.01385 * 0.02562 * 22 21 20 24 24 C 1.51082 * 107.29752 * 180.02562 * 22 21 20 25 25 O 1.43951 * 105.95349 * 342.32532 * 24 22 21 26 26 C 1.43941 * 104.94972 * 28.44560 * 25 24 22 27 27 H 1.09005 * 109.47096 * 300.00258 * 1 2 3 28 28 H 1.08996 * 109.47193 * 59.99691 * 1 2 3 29 29 H 1.09004 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47142 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46597 * 299.99961 * 3 2 1 32 32 H 1.09001 * 109.47089 * 59.99375 * 3 2 1 33 33 H 1.09002 * 109.46835 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46806 * 299.99462 * 4 2 1 35 35 H 0.97003 * 119.99695 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47176 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47619 * 59.99982 * 13 2 1 38 38 H 0.97004 * 120.00008 * 359.97438 * 14 13 2 39 39 H 1.08995 * 109.47590 * 59.99909 * 17 15 14 40 40 H 1.08998 * 109.47556 * 299.99555 * 17 15 14 41 41 H 1.08005 * 119.97619 * 359.97172 * 19 18 17 42 42 H 1.08004 * 120.04045 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.03936 * 179.97438 * 23 22 21 44 44 H 1.09005 * 110.15139 * 223.20795 * 24 22 21 45 45 H 1.08990 * 110.15650 * 101.44695 * 24 22 21 46 46 H 1.09002 * 110.15431 * 90.68060 * 26 25 24 47 47 H 1.09004 * 110.15347 * 212.36657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 1.4324 0.1379 -4.8057 9 14 2.9451 -2.0005 -3.9032 10 1 2.0865 -3.2112 -3.9491 11 1 3.7375 -1.9077 -5.1558 12 1 3.8651 -2.0899 -2.7410 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8777 -0.4907 3.6696 16 8 2.5749 -1.4767 3.7809 17 6 1.3757 0.2201 4.8999 18 6 1.8780 -0.4904 6.1305 19 6 1.1303 -1.5074 6.6946 20 6 1.5902 -2.1606 7.8235 21 6 2.7949 -1.7976 8.3861 22 6 3.5458 -0.7770 7.8203 23 6 3.0865 -0.1247 6.6947 24 6 4.7945 -0.6212 8.6566 25 8 4.5158 -1.2739 9.9090 26 6 3.5599 -2.3010 9.5879 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2491 35 1 1.6667 -0.1935 -5.6868 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.9942 0.7583 2.3564 39 1 0.2858 0.2202 4.9003 40 1 1.7391 1.2477 4.8996 41 1 0.1865 -1.7920 6.2532 42 1 1.0059 -2.9548 8.2643 43 1 3.6704 0.6700 6.2542 44 1 5.0060 0.4352 8.8224 45 1 5.6394 -1.1011 8.1629 46 1 4.0748 -3.2300 9.3432 47 1 2.8812 -2.4578 10.4263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583432155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:36 Heat of formation + Delta-G solvation = -87.368018 kcal Electronic energy + Delta-G solvation = -25789.668695 eV Core-core repulsion = 22128.960413 eV Total energy + Delta-G solvation = -3660.708282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70752 -40.81033 -38.93615 -38.18899 -35.17671 -34.08178 -33.67013 -32.46624 -30.24778 -29.58032 -28.44965 -27.97127 -27.17967 -25.23618 -24.24435 -22.69008 -22.17049 -21.16449 -19.75419 -18.90646 -17.96550 -17.64020 -17.38920 -17.20675 -16.82419 -16.47357 -16.18988 -15.85093 -15.34776 -15.33150 -15.14442 -14.77938 -14.71926 -14.21173 -14.14456 -14.08785 -13.91835 -13.56539 -13.45171 -13.00972 -12.96946 -12.84957 -12.82019 -12.56761 -12.32491 -12.29858 -12.16074 -11.80056 -11.77798 -11.50791 -11.28809 -11.10869 -10.93096 -10.80358 -10.71327 -10.01136 -9.81178 -9.42007 -8.23229 -6.23040 0.19731 0.37728 1.34450 1.37541 1.47207 1.71397 2.24613 2.37931 2.76086 2.93671 3.12151 3.19750 3.63958 3.73938 3.92001 3.97244 4.06588 4.10732 4.17612 4.26518 4.38064 4.41035 4.43995 4.53218 4.59638 4.63830 4.65838 4.72413 4.74899 4.80546 4.94841 4.96757 5.03538 5.10307 5.10779 5.30351 5.30829 5.32938 5.38453 5.41246 5.51029 5.55466 5.57683 5.69538 5.70758 5.77014 5.96513 6.37431 6.64831 6.83998 7.33536 7.39698 8.92217 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.002206 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.122661 B =12686.742383 C =12980.120077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.253 1.253 13 C 0.140 3.860 14 N -0.711 5.711 15 C 0.509 3.491 16 O -0.585 6.585 17 C -0.094 4.094 18 C -0.070 4.070 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.092 4.092 24 C 0.090 3.910 25 O -0.380 6.380 26 C 0.090 3.910 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.414 0.586 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 0.225 29.274 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.177 1.177 13 C 0.015 3.985 14 N -0.364 5.364 15 C 0.297 3.703 16 O -0.465 6.465 17 C -0.133 4.133 18 C -0.070 4.070 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.110 4.110 24 C 0.014 3.986 25 O -0.299 6.299 26 C 0.014 3.986 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.253 0.747 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.248 -0.423 29.379 29.383 hybrid contribution 0.250 -0.514 -1.388 1.501 sum 0.498 -0.937 27.991 28.011 Atomic orbital electron populations 1.21714 0.93790 1.01226 1.01436 1.20544 0.96556 0.96115 0.92577 1.21711 1.00155 0.94860 1.01436 1.19580 0.95846 0.95473 0.93385 1.21365 1.30149 1.12299 0.90023 0.92830 1.25833 0.97485 0.99867 0.95983 1.70037 1.48099 1.42631 0.98411 0.85910 0.79889 0.80487 0.77862 1.19757 1.21472 1.17713 1.21215 0.98008 0.95499 0.83734 1.45995 1.53399 1.32280 1.04770 1.21133 0.79666 0.84226 0.85271 1.90713 1.39871 1.28519 1.87420 1.20736 1.04579 1.00702 0.87323 1.19502 0.94812 0.97016 0.95691 1.21288 1.00852 0.95188 0.95585 1.20588 0.94678 1.00387 0.96082 1.21314 0.96488 0.98073 0.99233 1.21264 0.97781 0.98363 0.97672 1.20440 0.95606 1.00338 0.94661 1.21845 0.93870 0.99967 0.82921 1.89040 1.62243 1.49584 1.29058 1.21873 0.90241 0.91084 0.95413 0.90844 0.93689 0.93794 0.93872 0.93676 0.90844 0.96928 0.97041 0.92876 0.93156 0.93016 0.74731 0.84760 0.85041 0.84001 0.83636 0.84760 0.87066 0.90037 0.89782 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -1.95 0.54 -52.18 -0.03 -1.98 16 3 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 4 C 0.00 -0.22 3.11 29.85 0.09 -0.13 16 5 C -0.50 -26.84 8.20 25.60 0.21 -26.63 16 6 H 0.05 3.08 5.92 -2.91 -0.02 3.07 16 7 C 0.00 0.26 5.47 84.66 0.46 0.72 16 8 N -0.95 -58.21 13.96 21.45 0.30 -57.91 16 9 Si 0.93 44.32 27.47 68.60 1.88 46.20 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 13 C 0.14 4.25 4.56 86.38 0.39 4.64 16 14 N -0.71 -15.89 4.96 -463.07 -2.30 -18.19 16 15 C 0.51 11.96 7.82 87.65 0.69 12.64 16 16 O -0.59 -19.69 16.03 -3.00 -0.05 -19.73 16 17 C -0.09 -1.33 5.83 29.10 0.17 -1.16 16 18 C -0.07 -1.30 4.38 -19.84 -0.09 -1.39 16 19 C -0.11 -2.00 9.70 22.29 0.22 -1.79 16 20 C -0.10 -1.73 10.03 22.19 0.22 -1.51 16 21 C -0.15 -2.87 6.33 -19.71 -0.12 -2.99 16 22 C -0.15 -3.00 6.33 -19.68 -0.12 -3.13 16 23 C -0.09 -1.80 9.70 22.22 0.22 -1.59 16 24 C 0.09 1.54 7.63 71.36 0.54 2.08 16 25 O -0.38 -7.44 11.72 -148.98 -1.75 -9.19 16 26 C 0.09 1.43 7.63 71.36 0.54 1.97 16 27 H 0.07 1.67 6.86 -2.38 -0.02 1.66 16 28 H 0.04 1.67 6.62 -2.39 -0.02 1.66 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.68 6.62 -2.39 -0.02 1.67 16 32 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 33 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 34 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.41 6.73 6.16 -92.71 -0.57 6.16 16 39 H 0.13 1.13 8.08 -2.39 -0.02 1.11 16 40 H 0.13 1.16 8.09 -2.39 -0.02 1.14 16 41 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 44 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 1.33 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -73.48 375.85 2.99 -70.50 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.34 Total: 15.24 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 4.55 Total: -26.91 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.00 Total: -76.10 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.79 Total: -28.92 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -73.48 2.99 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583432155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.871 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds