Wall clock time and date at job start Tue Mar 31 2020 12:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46759 * 2 1 4 4 C 1.50698 * 109.46940 * 240.00536 * 2 1 3 5 5 H 1.08006 * 120.00136 * 240.00178 * 4 2 1 6 6 C 1.37877 * 120.00398 * 59.99443 * 4 2 1 7 7 N 1.31520 * 120.00046 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00363 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47156 * 90.00114 * 8 6 4 10 10 H 1.48495 * 109.47347 * 210.00070 * 8 6 4 11 11 H 1.48498 * 109.46996 * 330.00441 * 8 6 4 12 12 C 1.52998 * 109.47390 * 120.00028 * 2 1 3 13 13 N 1.46493 * 109.47411 * 300.00147 * 12 2 1 14 14 C 1.34776 * 120.00164 * 180.27222 * 13 12 2 15 15 O 1.21585 * 119.99680 * 359.72856 * 14 13 12 16 16 C 1.47534 * 119.99853 * 179.72000 * 14 13 12 17 17 C 1.39709 * 120.19231 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.90462 * 179.97438 * 17 16 14 19 19 C 1.38546 * 120.30067 * 0.02562 * 18 17 16 20 20 C 1.38048 * 120.39456 * 359.97438 * 19 18 17 21 21 C 1.38710 * 120.08133 * 359.73947 * 20 19 18 22 22 O 1.35655 * 120.15233 * 180.28150 * 21 20 19 23 23 C 1.42903 * 116.99752 * 6.05851 * 22 21 20 24 24 C 1.53784 * 113.61394 * 255.34616 * 23 22 21 25 25 C 1.53781 * 87.08285 * 220.02082 * 24 23 22 26 26 C 1.53781 * 87.08074 * 25.42953 * 25 24 23 27 27 H 1.09000 * 109.46852 * 299.99768 * 1 2 3 28 28 H 1.08995 * 109.47643 * 59.99864 * 1 2 3 29 29 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46977 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47573 * 299.99888 * 3 2 1 32 32 H 1.09000 * 109.47249 * 60.00475 * 3 2 1 33 33 H 0.96991 * 120.00142 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.46868 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46731 * 60.00464 * 12 2 1 36 36 H 0.97000 * 119.99742 * 359.97438 * 13 12 2 37 37 H 1.08000 * 120.04734 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.84634 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.80223 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.95978 * 180.02562 * 20 19 18 41 41 H 1.08997 * 112.85136 * 26.65204 * 23 22 21 42 42 H 1.09006 * 113.61102 * 334.56790 * 24 23 22 43 43 H 1.08996 * 113.61896 * 105.46944 * 24 23 22 44 44 H 1.09003 * 113.61207 * 270.88238 * 25 24 23 45 45 H 1.08998 * 113.61684 * 139.97913 * 25 24 23 46 46 H 1.09002 * 113.61531 * 220.02126 * 26 25 24 47 47 H 1.09006 * 113.69231 * 89.13026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3223 -1.1193 -4.0081 9 1 1.3446 -2.1614 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7563 -3.7121 12 6 2.0400 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4880 3.6694 15 8 2.5810 -1.4765 3.7809 16 6 1.3953 0.2110 4.8740 17 6 0.5915 1.3471 4.7505 18 6 0.1398 1.9950 5.8796 19 6 0.4795 1.5255 7.1380 20 6 1.2730 0.4042 7.2744 21 6 1.7317 -0.2641 6.1488 22 8 2.5068 -1.3694 6.2812 23 6 2.7034 -1.8690 7.6056 24 6 4.0949 -1.5573 8.1813 25 6 4.0791 -2.9745 8.7780 26 6 3.1037 -3.3531 7.6510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7093 1.1619 -3.4843 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9944 0.7581 2.3564 37 1 0.3245 1.7168 3.7716 38 1 -0.4812 2.8733 5.7830 39 1 0.1213 2.0399 8.0176 40 1 1.5331 0.0440 8.2588 41 1 1.8843 -1.6169 8.2790 42 1 4.8606 -1.4131 7.4189 43 1 4.0899 -0.7672 8.9322 44 1 3.6370 -3.0243 9.7731 45 1 5.0395 -3.4858 8.7144 46 1 2.2983 -4.0129 7.9739 47 1 3.5970 -3.7003 6.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:04 Heat of formation + Delta-G solvation = -29.937075 kcal Electronic energy + Delta-G solvation = -26688.440963 eV Core-core repulsion = 23030.223073 eV Total energy + Delta-G solvation = -3658.217889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68150 -39.24809 -38.03789 -36.37700 -36.14007 -33.24089 -31.56545 -30.42551 -29.96039 -25.93696 -25.86286 -25.69166 -25.50130 -25.02494 -23.34402 -22.08844 -20.40389 -19.59403 -18.93521 -18.45538 -17.24784 -16.28561 -15.83353 -15.72365 -15.20575 -15.04774 -14.94338 -14.52453 -14.41918 -14.37090 -13.96592 -13.11801 -12.93397 -12.85374 -12.67159 -12.57329 -12.32779 -12.13018 -11.87128 -11.66421 -11.52513 -11.33855 -11.17869 -11.15091 -10.83450 -10.66709 -10.65099 -10.45398 -10.34736 -10.17094 -9.59429 -9.45131 -9.15985 -9.12031 -8.75250 -8.41065 -8.31463 -8.12529 -5.99339 -4.09092 0.89412 1.32125 3.14072 3.19882 3.30442 3.37254 3.41429 3.80609 3.99917 4.27303 4.30190 4.42793 4.49530 4.53882 4.68883 4.73330 4.91868 5.05700 5.23531 5.27407 5.32369 5.36764 5.50373 5.52836 5.60611 5.68979 5.73232 5.81565 6.02793 6.14003 6.17246 6.31888 6.34615 6.39232 6.55335 6.62887 6.84529 6.85760 6.98819 7.06288 7.11779 7.39407 7.43509 7.59154 7.72507 8.04420 8.12755 8.23059 8.42404 8.83636 8.92505 9.56530 11.02159 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.003007 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.478911 B = 9308.437700 C =10527.444351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.715 5.715 14 C 0.548 3.452 15 O -0.531 6.531 16 C -0.165 4.165 17 C -0.048 4.048 18 C -0.169 4.169 19 C -0.060 4.060 20 C -0.225 4.225 21 C 0.183 3.817 22 O -0.262 6.262 23 C 0.045 3.955 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.129 4.129 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.395 0.605 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 0.921 22.812 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.367 5.367 14 C 0.334 3.666 15 O -0.409 6.409 16 C -0.169 4.169 17 C -0.067 4.067 18 C -0.187 4.187 19 C -0.078 4.078 20 C -0.243 4.243 21 C 0.135 3.865 22 O -0.173 6.173 23 C -0.012 4.012 24 C -0.193 4.193 25 C -0.178 4.178 26 C -0.166 4.166 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.055 0.177 22.552 22.553 hybrid contribution -0.099 0.113 -0.671 0.687 sum -0.154 0.290 21.882 21.884 Atomic orbital electron populations 1.21832 0.97795 0.99218 1.00013 1.18353 0.92771 0.92756 0.90598 1.21833 0.98642 0.98368 1.00014 1.21001 1.31383 1.12058 0.89903 0.92421 1.24878 0.94895 0.94919 0.98827 1.69803 1.36814 1.22743 1.23178 0.86574 0.79342 0.79376 0.82598 1.20731 1.21292 1.19895 1.21694 0.98128 0.95767 0.83262 1.46219 1.52779 1.31895 1.05823 1.17984 0.81088 0.84445 0.83098 1.90778 1.37705 1.25780 1.86628 1.19617 1.05536 0.99793 0.91941 1.21277 0.93385 0.92477 0.99530 1.20974 1.03713 1.01924 0.92089 1.21058 0.94713 0.94389 0.97655 1.21200 1.05632 0.99824 0.97666 1.19059 0.88560 0.86240 0.92630 1.86508 1.62822 1.39302 1.28659 1.24292 0.97376 0.96079 0.83443 1.23501 0.97731 0.97516 1.00521 1.22655 1.00430 0.96768 0.97932 1.23158 0.99447 0.94195 0.99831 0.97561 0.89588 0.95410 0.95407 0.89580 0.97565 0.93041 0.92733 0.92731 0.76928 0.84847 0.85360 0.85620 0.85088 0.88510 0.88714 0.91074 0.89909 0.90378 0.90672 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 4 C -0.50 -13.44 8.01 -34.44 -0.28 -13.71 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.82 9.35 55.43 0.52 -23.30 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.97 4.50 -4.05 -0.02 2.95 16 13 N -0.72 -13.69 4.91 -61.35 -0.30 -13.99 16 14 C 0.55 10.69 7.76 -12.47 -0.10 10.59 16 15 O -0.53 -12.12 15.16 -16.59 -0.25 -12.37 16 16 C -0.16 -2.63 5.89 -104.84 -0.62 -3.25 16 17 C -0.05 -0.62 9.54 -39.20 -0.37 -0.99 16 18 C -0.17 -1.76 10.02 -39.63 -0.40 -2.16 16 19 C -0.06 -0.58 10.03 -39.54 -0.40 -0.98 16 20 C -0.22 -2.50 9.00 -39.48 -0.36 -2.85 16 21 C 0.18 2.70 6.69 -38.69 -0.26 2.44 16 22 O -0.26 -4.08 8.22 -40.54 -0.33 -4.42 16 23 C 0.04 0.49 3.63 -25.92 -0.09 0.39 16 24 C -0.16 -1.43 7.91 -25.92 -0.21 -1.64 16 25 C -0.14 -1.07 8.08 -25.92 -0.21 -1.28 16 26 C -0.13 -1.26 7.91 -25.92 -0.21 -1.47 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.39 6.76 4.19 -40.82 -0.17 6.59 16 37 H 0.13 1.55 6.40 -52.49 -0.34 1.22 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.13 1.13 5.95 -52.49 -0.31 0.82 16 41 H 0.10 0.85 6.05 -51.93 -0.31 0.54 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -30.71 371.34 -9.96 -40.66 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.09 Total: 6.34 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.07 Total: -14.45 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.22 Total: -37.29 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.58 Total: -16.79 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.71 -9.96 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.726 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds