Wall clock time and date at job start Tue Mar 31 2020 12:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46759 * 2 1 4 4 C 1.50698 * 109.46940 * 240.00536 * 2 1 3 5 5 H 1.08006 * 120.00136 * 240.00178 * 4 2 1 6 6 C 1.37877 * 120.00398 * 59.99443 * 4 2 1 7 7 N 1.31520 * 120.00046 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00363 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47156 * 90.00114 * 8 6 4 10 10 H 1.48495 * 109.47347 * 210.00070 * 8 6 4 11 11 H 1.48498 * 109.46996 * 330.00441 * 8 6 4 12 12 C 1.52998 * 109.47390 * 120.00028 * 2 1 3 13 13 N 1.46493 * 109.47411 * 300.00147 * 12 2 1 14 14 C 1.34776 * 120.00164 * 180.27222 * 13 12 2 15 15 O 1.21585 * 119.99680 * 359.72856 * 14 13 12 16 16 C 1.47534 * 119.99853 * 179.72000 * 14 13 12 17 17 C 1.39709 * 120.19231 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.90462 * 179.97438 * 17 16 14 19 19 C 1.38546 * 120.30067 * 0.02562 * 18 17 16 20 20 C 1.38048 * 120.39456 * 359.97438 * 19 18 17 21 21 C 1.38710 * 120.08133 * 359.73947 * 20 19 18 22 22 O 1.35655 * 120.15233 * 180.28150 * 21 20 19 23 23 C 1.42903 * 116.99752 * 6.05851 * 22 21 20 24 24 C 1.53784 * 113.61394 * 255.34616 * 23 22 21 25 25 C 1.53781 * 87.08285 * 220.02082 * 24 23 22 26 26 C 1.53781 * 87.08074 * 25.42953 * 25 24 23 27 27 H 1.09000 * 109.46852 * 299.99768 * 1 2 3 28 28 H 1.08995 * 109.47643 * 59.99864 * 1 2 3 29 29 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46977 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47573 * 299.99888 * 3 2 1 32 32 H 1.09000 * 109.47249 * 60.00475 * 3 2 1 33 33 H 0.96991 * 120.00142 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.46868 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46731 * 60.00464 * 12 2 1 36 36 H 0.97000 * 119.99742 * 359.97438 * 13 12 2 37 37 H 1.08000 * 120.04734 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.84634 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.80223 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.95978 * 180.02562 * 20 19 18 41 41 H 1.08997 * 112.85136 * 26.65204 * 23 22 21 42 42 H 1.09006 * 113.61102 * 334.56790 * 24 23 22 43 43 H 1.08996 * 113.61896 * 105.46944 * 24 23 22 44 44 H 1.09003 * 113.61207 * 270.88238 * 25 24 23 45 45 H 1.08998 * 113.61684 * 139.97913 * 25 24 23 46 46 H 1.09002 * 113.61531 * 220.02126 * 26 25 24 47 47 H 1.09006 * 113.69231 * 89.13026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3223 -1.1193 -4.0081 9 1 1.3446 -2.1614 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7563 -3.7121 12 6 2.0400 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4880 3.6694 15 8 2.5810 -1.4765 3.7809 16 6 1.3953 0.2110 4.8740 17 6 0.5915 1.3471 4.7505 18 6 0.1398 1.9950 5.8796 19 6 0.4795 1.5255 7.1380 20 6 1.2730 0.4042 7.2744 21 6 1.7317 -0.2641 6.1488 22 8 2.5068 -1.3694 6.2812 23 6 2.7034 -1.8690 7.6056 24 6 4.0949 -1.5573 8.1813 25 6 4.0791 -2.9745 8.7780 26 6 3.1037 -3.3531 7.6510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7093 1.1619 -3.4843 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9944 0.7581 2.3564 37 1 0.3245 1.7168 3.7716 38 1 -0.4812 2.8733 5.7830 39 1 0.1213 2.0399 8.0176 40 1 1.5331 0.0440 8.2588 41 1 1.8843 -1.6169 8.2790 42 1 4.8606 -1.4131 7.4189 43 1 4.0899 -0.7672 8.9322 44 1 3.6370 -3.0243 9.7731 45 1 5.0395 -3.4858 8.7144 46 1 2.2983 -4.0129 7.9739 47 1 3.5970 -3.7003 6.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:03 Heat of formation + Delta-G solvation = -45.802740 kcal Electronic energy + Delta-G solvation = -26689.128949 eV Core-core repulsion = 23030.223073 eV Total energy + Delta-G solvation = -3658.905876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69803 -40.49886 -39.12327 -38.01136 -37.19919 -35.00520 -33.07085 -31.87213 -30.87745 -27.58364 -27.55552 -26.97042 -26.67706 -26.30174 -24.53371 -22.99282 -21.69427 -20.64930 -20.46772 -19.65339 -18.49772 -17.75530 -17.29439 -16.66820 -16.62646 -16.31772 -16.25813 -15.89843 -15.74128 -15.31211 -14.99523 -14.80385 -14.51500 -14.47705 -13.97310 -13.54835 -13.46109 -13.26702 -13.16690 -13.11959 -12.73235 -12.69018 -12.60710 -12.40751 -12.29724 -12.26334 -12.14255 -11.97933 -11.50584 -11.38288 -11.28272 -11.20253 -10.80950 -10.68161 -10.40930 -10.14021 -9.86892 -9.17216 -8.03357 -6.19195 -0.10101 0.42675 1.41893 1.44290 1.53102 1.95944 2.26444 2.32347 2.49503 2.88371 3.19948 3.51657 3.57799 3.72304 3.78275 3.82860 3.89507 4.07611 4.18779 4.39223 4.42364 4.48367 4.50074 4.58852 4.68326 4.73240 4.76537 4.85785 4.94588 4.96889 5.00311 5.03240 5.07679 5.11117 5.17186 5.22007 5.34362 5.35687 5.38954 5.48488 5.57957 5.65340 5.65954 5.81523 6.13045 6.19296 6.42233 6.51176 6.70632 6.84189 7.34281 7.48316 8.95896 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.003007 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.478911 B = 9308.437700 C =10527.444351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.709 5.709 14 C 0.544 3.456 15 O -0.577 6.577 16 C -0.203 4.203 17 C -0.053 4.053 18 C -0.164 4.164 19 C -0.043 4.043 20 C -0.221 4.221 21 C 0.163 3.837 22 O -0.301 6.301 23 C 0.032 3.968 24 C -0.155 4.155 25 C -0.123 4.123 26 C -0.139 4.139 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.406 0.594 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 2.639 25.777 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.026 3.974 13 N -0.361 5.361 14 C 0.333 3.667 15 O -0.458 6.458 16 C -0.207 4.207 17 C -0.071 4.071 18 C -0.182 4.182 19 C -0.061 4.061 20 C -0.240 4.240 21 C 0.115 3.885 22 O -0.213 6.213 23 C -0.024 4.024 24 C -0.192 4.192 25 C -0.160 4.160 26 C -0.177 4.177 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.244 0.756 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.176 0.824 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.407 1.922 25.526 25.637 hybrid contribution 0.291 -0.400 -1.496 1.576 sum -1.117 1.522 24.030 24.104 Atomic orbital electron populations 1.21676 0.97022 0.98686 1.00464 1.18342 0.93316 0.93041 0.90057 1.21678 0.97906 0.97805 1.00463 1.21269 1.31867 1.12212 0.91648 0.93917 1.25449 0.95095 0.95588 1.00919 1.69897 1.36948 1.23172 1.23694 0.85742 0.78623 0.78525 0.79819 1.20412 1.20577 1.20212 1.21260 0.96800 0.95022 0.84274 1.46016 1.52991 1.32071 1.05044 1.18660 0.80055 0.83931 0.84034 1.90740 1.39811 1.27921 1.87306 1.19472 1.08693 1.01813 0.90711 1.21435 0.92941 0.91668 1.01105 1.21392 1.03025 1.02280 0.91453 1.21608 0.92450 0.93121 0.98917 1.21523 1.05081 0.99814 0.97537 1.19397 0.89080 0.86645 0.93368 1.86470 1.63337 1.40078 1.31442 1.24712 0.98946 0.96335 0.82363 1.23459 0.96039 0.99388 1.00338 1.22658 1.00068 0.95082 0.98190 1.23201 1.00485 0.94274 0.99719 0.94531 0.91540 0.96397 0.96417 0.91528 0.94540 0.92915 0.94711 0.94646 0.75613 0.84215 0.82075 0.81342 0.82396 0.85972 0.91296 0.88851 0.87079 0.90046 0.89402 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 2 C 0.05 2.57 0.50 -52.93 -0.03 2.54 16 3 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 4 C -0.53 -29.14 8.01 25.60 0.21 -28.94 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.58 5.15 84.65 0.44 2.01 16 7 N -0.90 -48.57 9.35 21.45 0.20 -48.37 16 8 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.15 6.97 4.50 86.38 0.39 7.36 16 13 N -0.71 -27.81 4.91 -466.29 -2.29 -30.10 16 14 C 0.54 22.16 7.76 86.70 0.67 22.83 16 15 O -0.58 -28.15 15.16 16.94 0.26 -27.89 16 16 C -0.20 -6.49 5.89 -20.01 -0.12 -6.61 16 17 C -0.05 -1.26 9.54 22.52 0.21 -1.04 16 18 C -0.16 -2.74 10.02 22.24 0.22 -2.52 16 19 C -0.04 -0.63 10.03 22.30 0.22 -0.40 16 20 C -0.22 -4.21 9.00 22.34 0.20 -4.01 16 21 C 0.16 4.73 6.69 22.84 0.15 4.88 16 22 O -0.30 -9.70 8.22 -68.78 -0.57 -10.27 16 23 C 0.03 0.67 3.63 31.12 0.11 0.79 16 24 C -0.15 -2.71 7.91 31.12 0.25 -2.46 16 25 C -0.12 -1.66 8.08 31.12 0.25 -1.41 16 26 C -0.14 -2.75 7.91 31.12 0.25 -2.51 16 27 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 28 H 0.07 3.35 6.07 -2.39 -0.01 3.33 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 3.36 6.07 -2.39 -0.01 3.34 16 32 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 33 H 0.26 13.54 8.31 -92.72 -0.77 12.77 16 34 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.41 13.74 4.19 -92.71 -0.39 13.35 16 37 H 0.14 2.99 6.40 -2.91 -0.02 2.97 16 38 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.16 2.05 5.95 -2.91 -0.02 2.03 16 41 H 0.12 1.84 6.05 -2.39 -0.01 1.82 16 42 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -70.88 371.34 4.81 -66.07 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.59 Total: 24.49 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.59 Total: -19.45 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.09 Total: -78.46 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.31 Total: -38.16 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.88 4.81 -66.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.271 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds