Wall clock time and date at job start Tue Mar 31 2020 12:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 C 1.52996 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47109 * 305.65648 * 4 3 2 6 6 C 1.50705 * 109.46870 * 185.66147 * 4 3 2 7 7 O 1.21282 * 120.00017 * 326.80786 * 6 4 3 8 8 N 1.34774 * 119.99741 * 146.81254 * 6 4 3 9 9 C 1.47023 * 125.65297 * 4.70807 * 8 6 4 10 10 C 1.54331 * 107.26793 * 178.85045 * 9 8 6 11 11 C 1.55152 * 103.02079 * 338.14136 * 10 9 8 12 12 O 1.42902 * 111.00656 * 277.23321 * 11 10 9 13 13 C 1.50699 * 111.03901 * 153.39541 * 11 10 9 14 14 H 1.07998 * 120.00240 * 247.78868 * 13 11 10 15 15 C 1.37873 * 120.00101 * 67.78132 * 13 11 10 16 16 N 1.31517 * 119.99972 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 120.00270 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46953 * 60.00113 * 17 15 13 19 19 H 1.48496 * 109.46961 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47040 * 300.00207 * 17 15 13 21 21 C 1.47429 * 125.64492 * 185.01609 * 8 6 4 22 22 C 1.50694 * 109.47222 * 65.66289 * 4 3 2 23 23 C 1.38241 * 119.99929 * 240.00121 * 22 4 3 24 24 C 1.38230 * 120.00093 * 180.02562 * 23 22 4 25 25 C 1.38237 * 120.00100 * 359.97438 * 24 23 22 26 26 C 1.38243 * 119.99874 * 359.97295 * 25 24 23 27 27 C 1.38230 * 120.00280 * 60.01901 * 22 4 3 28 28 H 1.09006 * 109.46836 * 299.99794 * 1 2 3 29 29 H 1.09000 * 109.47118 * 59.99330 * 1 2 3 30 30 H 1.08999 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46670 * 239.99694 * 2 1 3 32 32 H 1.08996 * 109.46743 * 120.00334 * 2 1 3 33 33 H 1.09006 * 109.46934 * 60.00266 * 3 2 1 34 34 H 1.09006 * 109.47109 * 300.00369 * 3 2 1 35 35 H 1.09003 * 109.88288 * 298.40083 * 9 8 6 36 36 H 1.09005 * 109.88001 * 59.56002 * 9 8 6 37 37 H 1.09000 * 110.85022 * 219.67252 * 10 9 8 38 38 H 1.08998 * 110.51435 * 96.45506 * 10 9 8 39 39 H 0.96696 * 113.99529 * 292.19502 * 12 11 10 40 40 H 0.97002 * 119.99755 * 179.97438 * 16 15 13 41 41 H 1.08991 * 110.37166 * 322.93198 * 21 8 6 42 42 H 1.09006 * 110.36241 * 85.14562 * 21 8 6 43 43 H 1.08000 * 119.99626 * 359.97438 * 23 22 4 44 44 H 1.07997 * 120.00275 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00423 * 179.70670 * 25 24 23 46 46 H 1.07997 * 119.99633 * 179.97438 * 26 25 24 47 47 H 1.07999 * 119.99839 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9337 0.8431 0.8341 6 6 4.0725 2.8562 0.1395 7 8 3.4458 3.7735 -0.3470 8 7 5.2184 3.1012 0.8054 9 6 6.1235 2.0825 1.3571 10 6 7.3115 2.8265 2.0028 11 6 7.2892 4.2049 1.2910 12 8 7.9540 4.1398 0.0277 13 6 7.8959 5.2739 2.1628 14 1 7.2743 6.0608 2.5640 15 6 9.2445 5.2475 2.4485 16 7 10.0015 4.2896 1.9597 17 14 9.9964 6.5722 3.5299 18 1 9.3464 6.5494 4.8648 19 1 11.4516 6.3193 3.6829 20 1 9.7889 7.9014 2.9009 21 6 5.7685 4.4354 1.1068 22 6 4.0718 0.8570 -1.2954 23 6 4.8665 -0.2741 -1.2806 24 6 5.3272 -0.8107 -2.4683 25 6 4.9929 -0.2167 -3.6709 26 6 4.1973 0.9138 -3.6858 27 6 3.7378 1.4512 -2.4980 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9563 -0.8900 35 1 5.6014 1.4906 2.1089 36 1 6.4843 1.4351 0.5577 37 1 8.2486 2.3059 1.8059 38 1 7.1519 2.9434 3.0747 39 1 8.9081 3.9966 0.0923 40 1 10.9504 4.2712 2.1604 41 1 5.5860 5.1175 0.2765 42 1 5.3290 4.8287 2.0236 43 1 5.1281 -0.7379 -0.3410 44 1 5.9484 -1.6941 -2.4567 45 1 5.3567 -0.6332 -4.5985 46 1 3.9364 1.3781 -4.6253 47 1 3.1175 2.3352 -2.5095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:29 Heat of formation + Delta-G solvation = -78.205192 kcal Electronic energy + Delta-G solvation = -27478.865285 eV Core-core repulsion = 23818.554334 eV Total energy + Delta-G solvation = -3660.310952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.23244 -38.72937 -37.28925 -35.46268 -34.30360 -32.23954 -32.14002 -30.82822 -29.83784 -28.76303 -28.20679 -25.61564 -24.24098 -22.74381 -22.31624 -21.82845 -20.61799 -19.63562 -18.56755 -17.27182 -16.96987 -16.57921 -15.65322 -15.08067 -15.00600 -14.95796 -14.74198 -14.65581 -14.14003 -13.78592 -13.53300 -13.29294 -13.16981 -12.85502 -12.76184 -12.38297 -12.12191 -12.03109 -11.75631 -11.70413 -11.42827 -11.34200 -11.31318 -11.04043 -10.98053 -10.87216 -10.80742 -10.63596 -10.54386 -10.50853 -10.04985 -9.47627 -9.39659 -8.83311 -8.69934 -8.54286 -8.21455 -7.96166 -6.31094 -4.39053 1.38549 1.48720 3.06484 3.20255 3.25365 3.28296 3.53550 3.87666 4.24833 4.70354 4.72082 4.92396 4.97325 4.99182 5.02137 5.06541 5.19132 5.22339 5.32092 5.52797 5.55155 5.56780 5.66334 5.71434 5.75193 5.78249 5.86580 5.87985 6.01438 6.02517 6.04636 6.12750 6.22264 6.28991 6.31819 6.44360 6.52145 6.58601 6.65166 6.69373 6.86959 6.97755 7.06258 7.28821 7.31595 7.72162 7.98140 8.15591 8.61301 8.66424 9.30090 9.48132 10.76493 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.003648 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.674216 B = 7673.183924 C = 8441.169211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.065 4.065 5 H 0.093 0.907 6 C 0.533 3.467 7 O -0.552 6.552 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.139 4.139 11 C 0.250 3.750 12 O -0.583 6.583 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.118 3.882 22 C -0.066 4.066 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.385 0.615 40 H 0.270 0.730 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 -12.349 -4.524 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.135 4.135 4 C -0.086 4.086 5 H 0.112 0.888 6 C 0.320 3.680 7 O -0.431 6.431 8 N -0.335 5.335 9 C -0.023 4.023 10 C -0.178 4.178 11 C 0.210 3.790 12 O -0.393 6.393 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.003 4.003 22 C -0.066 4.066 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.794 -11.846 -5.033 17.457 hybrid contribution 1.279 0.493 0.904 1.642 sum -10.515 -11.352 -4.129 16.015 Atomic orbital electron populations 1.21752 0.95854 1.01326 1.01866 1.21533 0.95766 0.96545 1.02171 1.21477 0.91550 0.97003 1.03466 1.20331 0.97384 0.94254 0.96622 0.88849 1.19938 0.80002 0.90282 0.77751 1.90638 1.57603 1.46416 1.48453 1.48589 1.21288 1.09524 1.54081 1.22168 0.91852 0.91324 0.96939 1.23202 0.95648 0.99213 0.99693 1.19551 0.86455 0.90993 0.82049 1.86114 1.26642 1.95719 1.30854 1.21454 0.94051 1.11287 1.30676 0.91710 1.24989 0.96905 0.95699 0.95370 1.69558 1.06631 1.32301 1.45258 0.86456 0.77898 0.81868 0.80653 1.20029 1.21093 1.19974 1.22389 0.94554 0.83349 1.00049 1.19392 0.98055 0.95553 0.93607 1.21036 0.97545 0.95937 0.98346 1.21072 1.00099 1.00202 0.92477 1.21128 0.98628 0.96419 0.97930 1.21119 0.98293 0.96355 0.97980 1.21131 0.99602 0.99510 0.91861 0.92783 0.92730 0.92922 0.91697 0.92092 0.91412 0.90626 0.92986 0.92311 0.89888 0.91425 0.76314 0.92016 0.91116 0.91173 0.86087 0.86136 0.86336 0.86200 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.25 5.76 -26.73 -0.15 -1.40 16 3 C -0.10 -1.23 4.13 -26.73 -0.11 -1.34 16 4 C -0.06 -0.93 1.97 -92.93 -0.18 -1.11 16 5 H 0.09 1.21 6.75 -51.93 -0.35 0.85 16 6 C 0.53 10.09 6.50 -10.98 -0.07 10.02 16 7 O -0.55 -12.00 16.15 5.56 0.09 -11.91 16 8 N -0.60 -12.09 3.33 -170.51 -0.57 -12.65 16 9 C 0.10 1.82 6.17 -3.06 -0.02 1.80 16 10 C -0.14 -2.96 5.64 -24.90 -0.14 -3.10 16 11 C 0.25 6.06 0.89 -89.62 -0.08 5.98 16 12 O -0.58 -15.20 13.18 -35.23 -0.46 -15.67 16 13 C -0.54 -13.91 8.25 -34.44 -0.28 -14.20 16 14 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.90 -23.01 10.79 55.43 0.60 -22.41 16 17 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.12 2.67 6.10 -2.53 -0.02 2.66 16 22 C -0.07 -0.93 3.78 -104.63 -0.40 -1.32 16 23 C -0.11 -1.40 9.67 -39.58 -0.38 -1.78 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 27 C -0.10 -1.50 8.74 -39.59 -0.35 -1.85 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.68 7.40 -51.93 -0.38 0.30 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.03 7.10 -51.93 -0.37 0.66 16 35 H 0.05 0.79 7.74 -51.93 -0.40 0.39 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.85 7.85 -51.93 -0.41 1.45 16 38 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 39 H 0.38 10.09 6.93 45.56 0.32 10.41 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.07 1.72 7.99 -51.93 -0.41 1.31 16 42 H 0.07 1.52 8.02 -51.93 -0.42 1.11 16 43 H 0.12 1.32 7.95 -52.49 -0.42 0.90 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 47 H 0.13 1.95 7.13 -52.49 -0.37 1.57 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -28.75 379.25 -9.74 -38.49 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.98 Total: 13.83 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.10 Total: -10.44 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.03 Total: -35.07 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.37 Total: -27.57 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.75 -9.74 -38.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.716 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds