Wall clock time and date at job start Tue Mar 31 2020 12:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 C 1.52996 * 109.47035 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47109 * 305.65648 * 4 3 2 6 6 C 1.50705 * 109.46870 * 185.66147 * 4 3 2 7 7 O 1.21282 * 120.00017 * 326.80786 * 6 4 3 8 8 N 1.34774 * 119.99741 * 146.81254 * 6 4 3 9 9 C 1.47023 * 125.65297 * 4.70807 * 8 6 4 10 10 C 1.54331 * 107.26793 * 178.85045 * 9 8 6 11 11 C 1.55152 * 103.02079 * 338.14136 * 10 9 8 12 12 O 1.42902 * 111.00656 * 277.23321 * 11 10 9 13 13 C 1.50699 * 111.03901 * 153.39541 * 11 10 9 14 14 H 1.07998 * 120.00240 * 247.78868 * 13 11 10 15 15 C 1.37873 * 120.00101 * 67.78132 * 13 11 10 16 16 N 1.31517 * 119.99972 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 120.00270 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46953 * 60.00113 * 17 15 13 19 19 H 1.48496 * 109.46961 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47040 * 300.00207 * 17 15 13 21 21 C 1.47429 * 125.64492 * 185.01609 * 8 6 4 22 22 C 1.50694 * 109.47222 * 65.66289 * 4 3 2 23 23 C 1.38241 * 119.99929 * 240.00121 * 22 4 3 24 24 C 1.38230 * 120.00093 * 180.02562 * 23 22 4 25 25 C 1.38237 * 120.00100 * 359.97438 * 24 23 22 26 26 C 1.38243 * 119.99874 * 359.97295 * 25 24 23 27 27 C 1.38230 * 120.00280 * 60.01901 * 22 4 3 28 28 H 1.09006 * 109.46836 * 299.99794 * 1 2 3 29 29 H 1.09000 * 109.47118 * 59.99330 * 1 2 3 30 30 H 1.08999 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46670 * 239.99694 * 2 1 3 32 32 H 1.08996 * 109.46743 * 120.00334 * 2 1 3 33 33 H 1.09006 * 109.46934 * 60.00266 * 3 2 1 34 34 H 1.09006 * 109.47109 * 300.00369 * 3 2 1 35 35 H 1.09003 * 109.88288 * 298.40083 * 9 8 6 36 36 H 1.09005 * 109.88001 * 59.56002 * 9 8 6 37 37 H 1.09000 * 110.85022 * 219.67252 * 10 9 8 38 38 H 1.08998 * 110.51435 * 96.45506 * 10 9 8 39 39 H 0.96696 * 113.99529 * 292.19502 * 12 11 10 40 40 H 0.97002 * 119.99755 * 179.97438 * 16 15 13 41 41 H 1.08991 * 110.37166 * 322.93198 * 21 8 6 42 42 H 1.09006 * 110.36241 * 85.14562 * 21 8 6 43 43 H 1.08000 * 119.99626 * 359.97438 * 23 22 4 44 44 H 1.07997 * 120.00275 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00423 * 179.70670 * 25 24 23 46 46 H 1.07997 * 119.99633 * 179.97438 * 26 25 24 47 47 H 1.07999 * 119.99839 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9337 0.8431 0.8341 6 6 4.0725 2.8562 0.1395 7 8 3.4458 3.7735 -0.3470 8 7 5.2184 3.1012 0.8054 9 6 6.1235 2.0825 1.3571 10 6 7.3115 2.8265 2.0028 11 6 7.2892 4.2049 1.2910 12 8 7.9540 4.1398 0.0277 13 6 7.8959 5.2739 2.1628 14 1 7.2743 6.0608 2.5640 15 6 9.2445 5.2475 2.4485 16 7 10.0015 4.2896 1.9597 17 14 9.9964 6.5722 3.5299 18 1 9.3464 6.5494 4.8648 19 1 11.4516 6.3193 3.6829 20 1 9.7889 7.9014 2.9009 21 6 5.7685 4.4354 1.1068 22 6 4.0718 0.8570 -1.2954 23 6 4.8665 -0.2741 -1.2806 24 6 5.3272 -0.8107 -2.4683 25 6 4.9929 -0.2167 -3.6709 26 6 4.1973 0.9138 -3.6858 27 6 3.7378 1.4512 -2.4980 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9563 -0.8900 35 1 5.6014 1.4906 2.1089 36 1 6.4843 1.4351 0.5577 37 1 8.2486 2.3059 1.8059 38 1 7.1519 2.9434 3.0747 39 1 8.9081 3.9966 0.0923 40 1 10.9504 4.2712 2.1604 41 1 5.5860 5.1175 0.2765 42 1 5.3290 4.8287 2.0236 43 1 5.1281 -0.7379 -0.3410 44 1 5.9484 -1.6941 -2.4567 45 1 5.3567 -0.6332 -4.5985 46 1 3.9364 1.3781 -4.6253 47 1 3.1175 2.3352 -2.5095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:28 Heat of formation + Delta-G solvation = -94.140525 kcal Electronic energy + Delta-G solvation = -27479.556293 eV Core-core repulsion = 23818.554334 eV Total energy + Delta-G solvation = -3661.001960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56444 -40.02123 -38.89897 -36.50559 -36.11908 -34.14496 -33.21469 -31.78519 -31.50901 -30.14579 -29.56042 -27.28042 -25.51697 -23.98907 -23.51478 -22.84155 -21.83017 -21.31221 -20.00179 -19.17030 -18.19006 -17.91308 -16.98097 -16.76370 -16.55952 -16.24269 -16.04032 -15.70343 -15.58562 -15.19408 -14.80785 -14.58581 -14.27280 -14.03850 -13.97044 -13.82243 -13.60651 -13.39311 -13.24479 -13.16925 -13.05551 -12.68159 -12.63258 -12.50369 -12.32748 -12.25972 -11.93938 -11.88814 -11.85643 -11.79884 -11.46056 -11.31048 -10.90268 -10.63894 -10.16075 -9.80357 -9.60320 -9.56551 -8.25590 -6.40521 0.39610 0.51618 1.43195 1.45295 1.52186 1.59890 2.04346 2.39664 2.87635 2.99172 3.50607 3.67009 3.81090 3.86627 4.01850 4.04937 4.16150 4.16875 4.26193 4.29660 4.31698 4.38089 4.42548 4.59310 4.61983 4.65669 4.69281 4.77076 4.81792 4.87310 4.95365 5.05618 5.10304 5.15689 5.16752 5.23747 5.29229 5.36734 5.43282 5.47606 5.51252 5.57838 5.63299 5.68574 5.76507 6.04859 6.11956 6.59971 6.64623 7.12773 7.30871 7.44838 8.80562 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.003648 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.674216 B = 7673.183924 C = 8441.169211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.093 4.093 4 C -0.052 4.052 5 H 0.116 0.884 6 C 0.526 3.474 7 O -0.589 6.589 8 N -0.609 5.609 9 C 0.107 3.893 10 C -0.129 4.129 11 C 0.236 3.764 12 O -0.597 6.597 13 C -0.564 4.564 14 H 0.056 0.944 15 C 0.037 3.963 16 N -0.909 5.909 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.280 1.280 21 C 0.123 3.877 22 C -0.080 4.080 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.127 4.127 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.381 0.619 40 H 0.273 0.727 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.133 0.867 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 -14.912 -3.883 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.131 4.131 4 C -0.073 4.073 5 H 0.134 0.866 6 C 0.316 3.684 7 O -0.470 6.470 8 N -0.340 5.340 9 C -0.015 4.015 10 C -0.167 4.167 11 C 0.195 3.805 12 O -0.407 6.407 13 C -0.602 4.602 14 H 0.075 0.925 15 C -0.164 4.164 16 N -0.549 5.549 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.205 1.205 21 C 0.000 4.000 22 C -0.081 4.081 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.146 4.146 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.163 0.837 46 H 0.150 0.850 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.590 -14.434 -4.390 19.025 hybrid contribution 1.224 1.328 0.620 1.909 sum -10.366 -13.106 -3.770 17.130 Atomic orbital electron populations 1.21752 0.95010 1.02275 1.01724 1.21467 0.96446 0.94455 1.02747 1.21463 0.90559 0.98768 1.02353 1.20334 0.98191 0.90964 0.97858 0.86564 1.20872 0.79098 0.92026 0.76367 1.90614 1.58551 1.48177 1.49653 1.48693 1.21980 1.08690 1.54649 1.22202 0.90698 0.90608 0.97948 1.22986 0.96640 0.97581 0.99525 1.19755 0.86746 0.92523 0.81431 1.86103 1.26381 1.95908 1.32272 1.21688 0.94794 1.12053 1.31662 0.92546 1.25614 0.97060 0.97428 0.96329 1.69619 1.06810 1.33006 1.45440 0.85563 0.77355 0.79174 0.79233 1.19384 1.20365 1.20518 1.22158 0.94177 0.84664 0.99009 1.19416 0.99182 0.96559 0.92898 1.21326 0.96737 0.95309 0.99875 1.21479 0.99653 1.00791 0.92001 1.21496 0.97645 0.95650 0.99376 1.21355 0.98529 0.97023 0.97914 1.21132 1.00617 0.99562 0.93257 0.92596 0.93302 0.91384 0.91901 0.90574 0.91889 0.92461 0.88917 0.91446 0.91013 0.91426 0.76805 0.91761 0.94105 0.90776 0.83861 0.83289 0.83688 0.84957 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.11 -2.09 5.76 30.59 0.18 -1.91 16 3 C -0.09 -2.32 4.13 30.59 0.13 -2.19 16 4 C -0.05 -1.45 1.97 -12.29 -0.02 -1.47 16 5 H 0.12 2.64 6.75 -2.39 -0.02 2.62 16 6 C 0.53 20.06 6.50 87.66 0.57 20.63 16 7 O -0.59 -26.65 16.15 -3.04 -0.05 -26.70 16 8 N -0.61 -24.25 3.33 -811.75 -2.70 -26.95 16 9 C 0.11 3.68 6.17 86.73 0.54 4.22 16 10 C -0.13 -5.39 5.64 31.78 0.18 -5.21 16 11 C 0.24 11.59 0.89 -10.15 -0.01 11.58 16 12 O -0.60 -31.80 13.18 -148.98 -1.96 -33.77 16 13 C -0.56 -29.69 8.25 25.60 0.21 -29.48 16 14 H 0.06 2.97 7.77 -2.91 -0.02 2.95 16 15 C 0.04 1.87 5.30 84.65 0.45 2.32 16 16 N -0.91 -46.46 10.79 21.45 0.23 -46.23 16 17 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.12 5.71 6.10 86.86 0.53 6.24 16 22 C -0.08 -2.17 3.78 -19.87 -0.08 -2.25 16 23 C -0.11 -2.57 9.67 22.27 0.22 -2.35 16 24 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 25 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 26 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 27 C -0.13 -3.75 8.74 22.27 0.19 -3.56 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.20 7.40 -2.39 -0.02 1.18 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 1.62 7.10 -2.38 -0.02 1.60 16 35 H 0.09 2.47 7.74 -2.39 -0.02 2.45 16 36 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.07 3.15 7.85 -2.39 -0.02 3.14 16 38 H 0.07 2.79 8.03 -2.39 -0.02 2.77 16 39 H 0.38 20.39 6.93 -74.06 -0.51 19.88 16 40 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 41 H 0.04 2.09 7.99 -2.39 -0.02 2.07 16 42 H 0.07 3.32 8.02 -2.38 -0.02 3.30 16 43 H 0.14 2.51 7.95 -2.91 -0.02 2.48 16 44 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 47 H 0.10 3.43 7.13 -2.91 -0.02 3.41 16 Total: -1.00 -63.51 379.25 2.45 -61.06 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: 0.44 Total: 42.36 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.46 Total: -12.76 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.47 Total: -73.17 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -2.01 Total: -60.46 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -63.51 2.45 -61.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.077 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds