Wall clock time and date at job start Tue Mar 31 2020 12:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.52998 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47377 * 305.93542 * 4 3 2 6 6 C 1.50698 * 109.46987 * 185.93185 * 4 3 2 7 7 O 1.21280 * 120.00365 * 333.96174 * 6 4 3 8 8 N 1.34777 * 119.99962 * 153.96325 * 6 4 3 9 9 C 1.47024 * 125.64924 * 5.05480 * 8 6 4 10 10 C 1.54321 * 107.27234 * 181.02098 * 9 8 6 11 11 C 1.55156 * 102.94123 * 22.19684 * 10 9 8 12 12 O 1.42907 * 111.00666 * 82.56840 * 11 10 9 13 13 C 1.50705 * 111.00645 * 206.38251 * 11 10 9 14 14 H 1.07998 * 119.99511 * 24.74217 * 13 11 10 15 15 C 1.37877 * 120.00197 * 204.75019 * 13 11 10 16 16 N 1.31506 * 119.99896 * 172.42579 * 15 13 11 17 17 Si 1.86801 * 119.99887 * 352.42214 * 15 13 11 18 18 H 1.48500 * 109.46988 * 85.23789 * 17 15 13 19 19 H 1.48501 * 109.46958 * 205.23675 * 17 15 13 20 20 H 1.48503 * 109.47123 * 325.23608 * 17 15 13 21 21 C 1.47423 * 125.64838 * 184.75028 * 8 6 4 22 22 C 1.50707 * 109.47168 * 65.93390 * 4 3 2 23 23 C 1.38236 * 119.99356 * 59.72089 * 22 4 3 24 24 C 1.38243 * 119.99434 * 180.30281 * 23 22 4 25 25 C 1.38230 * 119.99863 * 359.97438 * 24 23 22 26 26 C 1.38240 * 120.00369 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99882 * 239.99967 * 22 4 3 28 28 H 1.08994 * 109.46864 * 59.99547 * 1 2 3 29 29 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46530 * 300.00026 * 1 2 3 31 31 H 1.09004 * 109.46886 * 240.00357 * 2 1 3 32 32 H 1.09002 * 109.47089 * 120.00628 * 2 1 3 33 33 H 1.09004 * 109.46955 * 60.00399 * 3 2 1 34 34 H 1.08991 * 109.47248 * 300.00326 * 3 2 1 35 35 H 1.08996 * 109.88438 * 300.44419 * 9 8 6 36 36 H 1.09006 * 109.87880 * 61.60738 * 9 8 6 37 37 H 1.08999 * 110.71995 * 140.55603 * 10 9 8 38 38 H 1.08996 * 110.72180 * 263.65508 * 10 9 8 39 39 H 0.96700 * 113.99722 * 56.35658 * 12 11 10 40 40 H 0.97002 * 119.99995 * 179.97438 * 16 15 13 41 41 H 1.09001 * 110.36584 * 274.74315 * 21 8 6 42 42 H 1.08996 * 110.37027 * 37.06795 * 21 8 6 43 43 H 1.07994 * 120.00614 * 0.27963 * 23 22 4 44 44 H 1.07998 * 119.99855 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.00041 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.99625 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00191 * 359.71723 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8395 0.8330 6 6 4.0723 2.8557 0.1475 7 8 3.3849 3.7849 -0.2199 8 7 5.2855 3.0870 0.6871 9 6 6.2609 2.0578 1.0757 10 6 7.4854 2.7871 1.6675 11 6 6.8985 4.1567 2.1000 12 8 6.2686 4.0632 3.3793 13 6 7.9624 5.2241 2.1018 14 1 8.8357 5.1169 1.4755 15 6 7.8210 6.3372 2.9030 16 7 8.8119 7.1939 3.0193 17 14 6.2218 6.6283 3.8234 18 1 6.2492 5.8874 5.1101 19 1 6.0622 8.0802 4.0915 20 1 5.0825 6.1488 3.0003 21 6 5.8568 4.4142 0.9796 22 6 4.0729 0.8628 -1.2964 23 6 3.7347 1.4589 -2.4969 24 6 4.1908 0.9236 -3.6870 25 6 4.9855 -0.2074 -3.6765 26 6 5.3237 -0.8034 -2.4760 27 6 4.8676 -0.2682 -1.2859 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 5.8245 1.3977 1.8253 36 1 6.5601 1.4813 0.2003 37 1 7.8773 2.2462 2.5288 38 1 8.2592 2.9176 0.9111 39 1 6.8476 3.7323 4.0795 40 1 8.7123 7.9772 3.5827 41 1 6.3428 4.8217 0.0931 42 1 5.0800 5.0921 1.3329 43 1 3.1138 2.3426 -2.5051 44 1 3.9269 1.3895 -4.6249 45 1 5.3422 -0.6254 -4.6063 46 1 5.9450 -1.6868 -2.4679 47 1 5.1319 -0.7338 -0.3480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:38 Heat of formation + Delta-G solvation = -72.235452 kcal Electronic energy + Delta-G solvation = -27580.763300 eV Core-core repulsion = 23920.711216 eV Total energy + Delta-G solvation = -3660.052084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38146 -38.94241 -37.64081 -35.54809 -34.75154 -32.42481 -32.31945 -30.97979 -30.26943 -28.88954 -28.41314 -25.69848 -24.19541 -22.94213 -22.55422 -21.97848 -20.68173 -19.81795 -18.71841 -17.52758 -17.10320 -16.81170 -15.76222 -15.47811 -15.10168 -14.99624 -14.81475 -14.77970 -14.43821 -13.96848 -13.73771 -13.50222 -13.27102 -12.94451 -12.89414 -12.54419 -12.48179 -12.24983 -11.98452 -11.90806 -11.78498 -11.55100 -11.46721 -11.10259 -11.07824 -10.92061 -10.87141 -10.62577 -10.57801 -10.30827 -10.23121 -9.60129 -9.27098 -8.98823 -8.71306 -8.63907 -8.50498 -8.09242 -6.22230 -4.34628 1.23933 1.33084 2.96765 3.39072 3.46397 3.55040 3.71116 3.72576 4.48987 4.59230 4.62344 4.80415 4.89049 4.91794 4.96024 4.99923 5.07023 5.09674 5.17878 5.22481 5.25334 5.41003 5.47952 5.52578 5.56143 5.68818 5.72707 5.74092 5.81210 5.87961 5.97564 6.00736 6.03980 6.10930 6.17155 6.27154 6.37946 6.44461 6.50045 6.53297 6.56252 6.66244 6.72571 6.91148 6.97549 7.44266 8.01228 8.10479 8.54193 8.60409 8.79319 9.39958 10.86416 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.004017 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.735308 B = 6969.237748 C = 7799.096630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.065 4.065 5 H 0.095 0.905 6 C 0.532 3.468 7 O -0.548 6.548 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.148 4.148 11 C 0.220 3.780 12 O -0.559 6.559 13 C -0.553 4.553 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.886 5.886 17 Si 0.947 3.053 18 H -0.291 1.291 19 H -0.324 1.324 20 H -0.271 1.271 21 C 0.113 3.887 22 C -0.066 4.066 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.112 4.112 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.371 0.629 40 H 0.267 0.733 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -18.569 -7.997 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.135 4.135 4 C -0.087 4.087 5 H 0.113 0.887 6 C 0.320 3.680 7 O -0.426 6.426 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.187 4.187 11 C 0.179 3.821 12 O -0.367 6.367 13 C -0.591 4.591 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.520 5.520 17 Si 0.782 3.218 18 H -0.218 1.218 19 H -0.255 1.255 20 H -0.197 1.197 21 C -0.008 4.008 22 C -0.066 4.066 23 C -0.123 4.123 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.130 4.130 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.352 -17.697 -8.496 22.193 hybrid contribution -0.040 -0.001 0.798 0.799 sum -10.391 -17.699 -7.698 21.920 Atomic orbital electron populations 1.21751 0.95811 1.01339 1.01934 1.21532 0.95851 0.96516 1.02065 1.21472 0.91441 0.96945 1.03642 1.20358 0.97591 0.94272 0.96449 0.88684 1.19969 0.80270 0.90442 0.77349 1.90663 1.56435 1.45528 1.49974 1.48680 1.15178 1.09609 1.60578 1.22043 0.90258 0.91097 0.98539 1.23270 0.95983 0.98273 1.01146 1.20262 0.89321 0.92219 0.80289 1.86122 1.44003 1.86614 1.19941 1.21146 1.05695 1.04094 1.28122 0.90002 1.25133 0.97212 0.94990 0.95575 1.69960 1.31593 1.12639 1.37817 0.85731 0.83205 0.73128 0.79744 1.21826 1.25546 1.19673 1.22974 0.96523 0.83328 0.97984 1.19438 0.97923 0.95602 0.93652 1.21140 0.99606 0.99718 0.91879 1.21136 0.98147 0.96372 0.97975 1.21142 0.98653 0.96351 0.97996 1.21090 1.00164 1.00111 0.92449 1.21046 0.97749 0.95879 0.98352 0.92727 0.92906 0.92720 0.91786 0.92106 0.91226 0.90685 0.92238 0.92258 0.90721 0.90197 0.78084 0.92328 0.90377 0.90601 0.85612 0.86128 0.86274 0.86088 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.20 5.76 -26.73 -0.15 -1.36 16 3 C -0.10 -1.21 4.02 -26.73 -0.11 -1.32 16 4 C -0.07 -0.88 1.84 -92.92 -0.17 -1.05 16 5 H 0.09 1.15 6.97 -51.93 -0.36 0.78 16 6 C 0.53 9.69 6.57 -10.99 -0.07 9.62 16 7 O -0.55 -11.79 16.51 5.56 0.09 -11.70 16 8 N -0.61 -11.42 3.32 -170.38 -0.57 -11.99 16 9 C 0.10 1.61 6.31 -3.06 -0.02 1.59 16 10 C -0.15 -2.57 6.11 -24.90 -0.15 -2.73 16 11 C 0.22 4.78 0.70 -89.50 -0.06 4.72 16 12 O -0.56 -11.98 8.67 -35.23 -0.31 -12.29 16 13 C -0.55 -14.50 8.88 -34.44 -0.31 -14.80 16 14 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 15 C 0.08 2.12 5.46 -17.82 -0.10 2.03 16 16 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 17 Si 0.95 23.87 24.84 -169.99 -4.22 19.65 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.32 -8.39 7.11 56.52 0.40 -7.99 16 20 H -0.27 -7.01 5.51 56.52 0.31 -6.70 16 21 C 0.11 2.51 5.87 -2.41 -0.01 2.50 16 22 C -0.07 -0.82 3.80 -104.62 -0.40 -1.22 16 23 C -0.11 -1.36 8.75 -39.58 -0.35 -1.71 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.11 -1.20 9.46 -39.59 -0.37 -1.57 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.64 7.41 -51.93 -0.38 0.25 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 35 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 36 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 37 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 38 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 39 H 0.37 6.77 9.02 45.56 0.41 7.18 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 1.76 8.04 -51.93 -0.42 1.35 16 42 H 0.08 1.88 6.47 -51.93 -0.34 1.55 16 43 H 0.13 1.75 7.52 -52.49 -0.39 1.36 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.09 7.95 -52.49 -0.42 0.67 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -32.23 374.00 -8.64 -40.87 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.94 Total: 6.38 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.10 Total: -11.19 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.21 Total: -37.36 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.21 Total: -23.99 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.22 Total: 19.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.23 -8.64 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.366 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds