Wall clock time and date at job start Tue Mar 31 2020 12:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.52998 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47377 * 305.93542 * 4 3 2 6 6 C 1.50698 * 109.46987 * 185.93185 * 4 3 2 7 7 O 1.21280 * 120.00365 * 333.96174 * 6 4 3 8 8 N 1.34777 * 119.99962 * 153.96325 * 6 4 3 9 9 C 1.47024 * 125.64924 * 5.05480 * 8 6 4 10 10 C 1.54321 * 107.27234 * 181.02098 * 9 8 6 11 11 C 1.55156 * 102.94123 * 22.19684 * 10 9 8 12 12 O 1.42907 * 111.00666 * 82.56840 * 11 10 9 13 13 C 1.50705 * 111.00645 * 206.38251 * 11 10 9 14 14 H 1.07998 * 119.99511 * 24.74217 * 13 11 10 15 15 C 1.37877 * 120.00197 * 204.75019 * 13 11 10 16 16 N 1.31506 * 119.99896 * 172.42579 * 15 13 11 17 17 Si 1.86801 * 119.99887 * 352.42214 * 15 13 11 18 18 H 1.48500 * 109.46988 * 85.23789 * 17 15 13 19 19 H 1.48501 * 109.46958 * 205.23675 * 17 15 13 20 20 H 1.48503 * 109.47123 * 325.23608 * 17 15 13 21 21 C 1.47423 * 125.64838 * 184.75028 * 8 6 4 22 22 C 1.50707 * 109.47168 * 65.93390 * 4 3 2 23 23 C 1.38236 * 119.99356 * 59.72089 * 22 4 3 24 24 C 1.38243 * 119.99434 * 180.30281 * 23 22 4 25 25 C 1.38230 * 119.99863 * 359.97438 * 24 23 22 26 26 C 1.38240 * 120.00369 * 0.02562 * 25 24 23 27 27 C 1.38230 * 119.99882 * 239.99967 * 22 4 3 28 28 H 1.08994 * 109.46864 * 59.99547 * 1 2 3 29 29 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46530 * 300.00026 * 1 2 3 31 31 H 1.09004 * 109.46886 * 240.00357 * 2 1 3 32 32 H 1.09002 * 109.47089 * 120.00628 * 2 1 3 33 33 H 1.09004 * 109.46955 * 60.00399 * 3 2 1 34 34 H 1.08991 * 109.47248 * 300.00326 * 3 2 1 35 35 H 1.08996 * 109.88438 * 300.44419 * 9 8 6 36 36 H 1.09006 * 109.87880 * 61.60738 * 9 8 6 37 37 H 1.08999 * 110.71995 * 140.55603 * 10 9 8 38 38 H 1.08996 * 110.72180 * 263.65508 * 10 9 8 39 39 H 0.96700 * 113.99722 * 56.35658 * 12 11 10 40 40 H 0.97002 * 119.99995 * 179.97438 * 16 15 13 41 41 H 1.09001 * 110.36584 * 274.74315 * 21 8 6 42 42 H 1.08996 * 110.37027 * 37.06795 * 21 8 6 43 43 H 1.07994 * 120.00614 * 0.27963 * 23 22 4 44 44 H 1.07998 * 119.99855 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.00041 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.99625 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00191 * 359.71723 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8395 0.8330 6 6 4.0723 2.8557 0.1475 7 8 3.3849 3.7849 -0.2199 8 7 5.2855 3.0870 0.6871 9 6 6.2609 2.0578 1.0757 10 6 7.4854 2.7871 1.6675 11 6 6.8985 4.1567 2.1000 12 8 6.2686 4.0632 3.3793 13 6 7.9624 5.2241 2.1018 14 1 8.8357 5.1169 1.4755 15 6 7.8210 6.3372 2.9030 16 7 8.8119 7.1939 3.0193 17 14 6.2218 6.6283 3.8234 18 1 6.2492 5.8874 5.1101 19 1 6.0622 8.0802 4.0915 20 1 5.0825 6.1488 3.0003 21 6 5.8568 4.4142 0.9796 22 6 4.0729 0.8628 -1.2964 23 6 3.7347 1.4589 -2.4969 24 6 4.1908 0.9236 -3.6870 25 6 4.9855 -0.2074 -3.6765 26 6 5.3237 -0.8034 -2.4760 27 6 4.8676 -0.2682 -1.2859 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 5.8245 1.3977 1.8253 36 1 6.5601 1.4813 0.2003 37 1 7.8773 2.2462 2.5288 38 1 8.2592 2.9176 0.9111 39 1 6.8476 3.7323 4.0795 40 1 8.7123 7.9772 3.5827 41 1 6.3428 4.8217 0.0931 42 1 5.0800 5.0921 1.3329 43 1 3.1138 2.3426 -2.5051 44 1 3.9269 1.3895 -4.6249 45 1 5.3422 -0.6254 -4.6063 46 1 5.9450 -1.6868 -2.4679 47 1 5.1319 -0.7338 -0.3480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:37 Heat of formation + Delta-G solvation = -93.059425 kcal Electronic energy + Delta-G solvation = -27581.666295 eV Core-core repulsion = 23920.711216 eV Total energy + Delta-G solvation = -3660.955080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62416 -40.12859 -39.09404 -36.55003 -36.35358 -34.49800 -33.26349 -31.80137 -31.76160 -30.20558 -29.62599 -27.34699 -25.48780 -24.13648 -23.53059 -22.85991 -21.78474 -21.41761 -20.04157 -19.46389 -18.25990 -17.94576 -17.25068 -16.78288 -16.57535 -16.34663 -16.22063 -15.68020 -15.64015 -15.41296 -14.93419 -14.56821 -14.41273 -14.18710 -14.11557 -14.05066 -13.75686 -13.62170 -13.47132 -13.21727 -13.17539 -12.70283 -12.57206 -12.41300 -12.32947 -12.16143 -12.00276 -11.92437 -11.86605 -11.79453 -11.48123 -11.30502 -10.96758 -10.69333 -10.35542 -9.80278 -9.61533 -9.58983 -8.39863 -6.51443 0.39824 0.51875 1.40881 1.47164 1.58363 1.66672 2.01838 2.38489 2.87303 2.93269 3.36623 3.57654 3.66719 3.80446 3.83283 4.04465 4.15594 4.16275 4.21964 4.24123 4.31740 4.33126 4.41477 4.47890 4.61445 4.64590 4.67492 4.75885 4.80331 4.83597 4.93083 4.94124 5.03888 5.09684 5.15684 5.18602 5.21937 5.24746 5.29983 5.34566 5.45513 5.52197 5.58821 5.64719 5.69030 6.04429 6.12137 6.55354 6.60400 6.98512 7.11363 7.28826 8.72937 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.004017 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.735308 B = 6969.237748 C = 7799.096630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.095 4.095 4 C -0.051 4.051 5 H 0.120 0.880 6 C 0.524 3.476 7 O -0.593 6.593 8 N -0.612 5.612 9 C 0.106 3.894 10 C -0.138 4.138 11 C 0.217 3.783 12 O -0.563 6.563 13 C -0.545 4.545 14 H 0.054 0.946 15 C 0.033 3.967 16 N -0.930 5.930 17 Si 1.000 3.000 18 H -0.270 1.270 19 H -0.337 1.337 20 H -0.286 1.286 21 C 0.117 3.883 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.110 4.110 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.387 0.613 40 H 0.268 0.732 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.144 0.856 46 H 0.151 0.849 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -23.027 -7.713 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.133 4.133 4 C -0.072 4.072 5 H 0.138 0.862 6 C 0.314 3.686 7 O -0.474 6.474 8 N -0.344 5.344 9 C -0.016 4.016 10 C -0.176 4.176 11 C 0.176 3.824 12 O -0.373 6.373 13 C -0.583 4.583 14 H 0.072 0.928 15 C -0.168 4.168 16 N -0.568 5.568 17 Si 0.835 3.165 18 H -0.196 1.196 19 H -0.270 1.270 20 H -0.213 1.213 21 C -0.007 4.007 22 C -0.079 4.079 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.128 4.128 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.117 0.883 44 H 0.148 0.852 45 H 0.162 0.838 46 H 0.169 0.831 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.336 -22.210 -8.195 25.831 hybrid contribution -0.018 1.383 0.579 1.500 sum -10.353 -20.826 -7.615 24.473 Atomic orbital electron populations 1.21761 0.95280 1.02292 1.01576 1.21461 0.96272 0.94329 1.02875 1.21453 0.91150 0.98695 1.02011 1.20327 0.97823 0.90902 0.98175 0.86179 1.20957 0.79496 0.92195 0.75948 1.90635 1.57636 1.47534 1.51638 1.48760 1.16087 1.08813 1.60741 1.22255 0.88586 0.90297 1.00414 1.23166 0.96641 0.95566 1.02244 1.20078 0.88169 0.93632 0.80488 1.86058 1.44388 1.86699 1.20198 1.21444 1.05694 1.04951 1.26230 0.92793 1.25739 0.99027 0.95150 0.96885 1.70055 1.33303 1.13666 1.39746 0.84866 0.79893 0.72344 0.79431 1.19575 1.26954 1.21327 1.22565 0.95615 0.84957 0.97531 1.19373 0.99287 0.96778 0.92451 1.21099 1.00600 0.99673 0.93355 1.21327 0.98520 0.97132 0.97731 1.21497 0.97571 0.95480 0.99523 1.21489 0.99608 1.00628 0.91820 1.21328 0.96601 0.94895 0.99996 0.93341 0.91231 0.92949 0.91499 0.90540 0.92703 0.92610 0.88973 0.89723 0.87699 0.90691 0.76253 0.92350 0.92099 0.94153 0.88283 0.85219 0.83805 0.83086 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.11 -1.96 5.76 30.60 0.18 -1.78 16 3 C -0.10 -2.33 4.02 30.59 0.12 -2.20 16 4 C -0.05 -1.30 1.84 -12.29 -0.02 -1.32 16 5 H 0.12 2.40 6.97 -2.39 -0.02 2.39 16 6 C 0.52 19.04 6.57 87.66 0.58 19.62 16 7 O -0.59 -26.77 16.51 -3.03 -0.05 -26.82 16 8 N -0.61 -22.39 3.32 -811.36 -2.70 -25.09 16 9 C 0.11 2.87 6.31 86.73 0.55 3.42 16 10 C -0.14 -4.38 6.11 31.78 0.19 -4.19 16 11 C 0.22 9.27 0.70 -10.07 -0.01 9.27 16 12 O -0.56 -23.07 8.67 -148.98 -1.29 -24.36 16 13 C -0.55 -28.95 8.88 25.60 0.23 -28.73 16 14 H 0.05 3.12 8.00 -2.91 -0.02 3.10 16 15 C 0.03 1.85 5.46 84.66 0.46 2.31 16 16 N -0.93 -56.32 13.96 21.45 0.30 -56.02 16 17 Si 1.00 50.11 24.84 68.60 1.70 51.82 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.34 -17.46 7.11 99.48 0.71 -16.75 16 20 H -0.29 -15.00 5.51 99.48 0.55 -14.45 16 21 C 0.12 5.26 5.87 86.93 0.51 5.77 16 22 C -0.08 -1.79 3.80 -19.86 -0.08 -1.87 16 23 C -0.13 -3.31 8.75 22.27 0.19 -3.11 16 24 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 25 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 26 C -0.12 -1.77 10.05 22.27 0.22 -1.54 16 27 C -0.11 -1.88 9.46 22.27 0.21 -1.67 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.15 7.41 -2.38 -0.02 1.14 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.06 1.56 7.10 -2.39 -0.02 1.54 16 35 H 0.09 1.98 7.68 -2.39 -0.02 1.96 16 36 H 0.08 1.93 7.93 -2.38 -0.02 1.91 16 37 H 0.10 2.72 8.13 -2.39 -0.02 2.70 16 38 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 39 H 0.39 12.94 9.02 -74.06 -0.67 12.27 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.06 2.88 8.04 -2.39 -0.02 2.86 16 42 H 0.04 2.08 6.47 -2.39 -0.02 2.07 16 43 H 0.10 2.98 7.52 -2.91 -0.02 2.96 16 44 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 47 H 0.15 1.73 7.95 -2.91 -0.02 1.71 16 Total: -1.00 -73.99 374.00 2.59 -71.40 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.13 Total: 21.10 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.50 Total: -12.04 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -2.40 Total: -81.11 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.34 Total: -51.18 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 1.70 Total: 51.82 kcal Total: -73.99 2.59 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.657 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds