Wall clock time and date at job start Tue Mar 31 2020 12:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46802 * 2 1 4 4 C 1.53002 * 109.47037 * 175.02647 * 3 2 1 5 5 H 1.09005 * 109.46966 * 305.70428 * 4 3 2 6 6 C 1.50700 * 109.47159 * 65.70355 * 4 3 2 7 7 O 1.21282 * 119.99789 * 35.02232 * 6 4 3 8 8 N 1.34771 * 119.99812 * 215.02711 * 6 4 3 9 9 C 1.47025 * 125.64942 * 354.98071 * 8 6 4 10 10 C 1.54328 * 107.27094 * 181.04215 * 9 8 6 11 11 C 1.55448 * 102.96937 * 22.19404 * 10 9 8 12 12 O 1.42896 * 111.00890 * 82.52207 * 11 10 9 13 13 C 1.50695 * 111.11884 * 206.46236 * 11 10 9 14 14 H 1.07998 * 119.99656 * 112.09953 * 13 11 10 15 15 C 1.37872 * 120.00168 * 292.10675 * 13 11 10 16 16 N 1.31514 * 119.99941 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99978 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47113 * 59.99755 * 17 15 13 19 19 H 1.48501 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46930 * 299.99545 * 17 15 13 21 21 C 1.47424 * 125.64688 * 174.96298 * 8 6 4 22 22 C 1.50703 * 109.47160 * 185.70348 * 4 3 2 23 23 C 1.38236 * 119.99953 * 299.72756 * 22 4 3 24 24 C 1.38231 * 119.99569 * 179.74350 * 23 22 4 25 25 C 1.38234 * 120.00228 * 0.52950 * 24 23 22 26 26 C 1.38233 * 120.00031 * 359.74231 * 25 24 23 27 27 C 1.38231 * 120.00115 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.46862 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47306 * 299.99726 * 1 2 3 30 30 H 1.08999 * 109.47170 * 59.99552 * 1 2 3 31 31 H 1.08993 * 109.46946 * 240.00351 * 2 1 3 32 32 H 1.08996 * 109.46970 * 119.99716 * 2 1 3 33 33 H 1.09010 * 109.47085 * 55.02954 * 3 2 1 34 34 H 1.08993 * 109.47448 * 295.03007 * 3 2 1 35 35 H 1.08995 * 109.88780 * 300.46358 * 9 8 6 36 36 H 1.08997 * 109.88013 * 61.62775 * 9 8 6 37 37 H 1.08992 * 110.71921 * 140.56085 * 10 9 8 38 38 H 1.09001 * 110.72045 * 263.65286 * 10 9 8 39 39 H 0.96703 * 114.00361 * 67.96215 * 12 11 10 40 40 H 0.96999 * 120.00094 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.37091 * 274.72593 * 21 8 6 42 42 H 1.09001 * 110.36612 * 36.94412 * 21 8 6 43 43 H 1.08002 * 119.99834 * 359.97438 * 23 22 4 44 44 H 1.08008 * 119.99796 * 180.29569 * 24 23 22 45 45 H 1.08006 * 120.00082 * 179.77166 * 25 24 23 46 46 H 1.08000 * 119.99968 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00464 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 0.1251 5 1 3.8581 0.8695 1.0035 6 6 4.1707 0.8233 -1.1071 7 8 3.6484 0.9889 -2.1890 8 7 5.2929 0.0837 -1.0066 9 6 6.0839 -0.1113 0.2173 10 6 7.2864 -1.0054 -0.1519 11 6 7.4158 -0.7995 -1.6873 12 8 8.1426 0.3943 -1.9846 13 6 8.0549 -1.9960 -2.3436 14 1 7.4755 -2.6223 -3.0057 15 6 9.3792 -2.2913 -2.0987 16 7 10.0848 -1.5284 -1.2926 17 14 10.1712 -3.7749 -2.9117 18 1 10.1040 -3.6252 -4.3876 19 1 11.5913 -3.8719 -2.4886 20 1 9.4480 -5.0067 -2.5056 21 6 5.9304 -0.6640 -2.1057 22 6 4.0556 2.8623 0.2659 23 6 3.8062 3.7827 -0.7349 24 6 4.2517 5.0846 -0.6032 25 6 4.9562 5.4634 0.5243 26 6 5.2105 4.5416 1.5225 27 6 4.7599 3.2412 1.3935 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6057 1.9815 0.8422 34 1 1.7512 1.9301 -0.9311 35 1 6.4373 0.8509 0.5877 36 1 5.4761 -0.6027 0.9770 37 1 8.1883 -0.6692 0.3594 38 1 7.0776 -2.0490 0.0835 39 1 9.0775 0.3568 -1.7403 40 1 11.0166 -1.7359 -1.1206 41 1 5.4742 -1.6485 -2.2094 42 1 5.8486 -0.1084 -3.0399 43 1 3.2599 3.4855 -1.6179 44 1 4.0527 5.8050 -1.3829 45 1 5.3075 6.4797 0.6255 46 1 5.7613 4.8374 2.4031 47 1 4.9589 2.5208 2.1732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:42 Heat of formation + Delta-G solvation = -78.478645 kcal Electronic energy + Delta-G solvation = -27529.200324 eV Core-core repulsion = 23868.877515 eV Total energy + Delta-G solvation = -3660.322810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22571 -38.71039 -37.33180 -35.25203 -34.30132 -32.41694 -32.14536 -30.83178 -29.83090 -28.69004 -28.19122 -25.56177 -24.23779 -22.66165 -22.46265 -21.32395 -21.08443 -19.65106 -18.48395 -17.31149 -16.95935 -16.70508 -15.46367 -15.12527 -14.98924 -14.86595 -14.75086 -14.68846 -14.07668 -13.74667 -13.53850 -13.27392 -13.16018 -12.89080 -12.66581 -12.37081 -12.16343 -12.04925 -11.70586 -11.58062 -11.52247 -11.33522 -11.31140 -11.19360 -10.91647 -10.84879 -10.66735 -10.60048 -10.56048 -10.50927 -10.05212 -9.46162 -9.38487 -8.84146 -8.70012 -8.56047 -8.21306 -7.95382 -6.31116 -4.39090 1.37275 1.48033 3.08294 3.20251 3.25373 3.28336 3.55678 3.86818 4.24906 4.63385 4.78857 4.92295 4.97473 5.02531 5.07030 5.11977 5.17154 5.22966 5.36672 5.55372 5.55919 5.60232 5.63169 5.71402 5.77748 5.82849 5.86831 5.93410 6.02027 6.03641 6.08917 6.12133 6.27250 6.30988 6.35331 6.44405 6.51113 6.57763 6.65274 6.68844 6.87361 6.98086 7.05597 7.28400 7.31475 7.72114 7.98333 8.16547 8.61692 8.67774 9.30118 9.48062 10.76533 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.004005 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.003306 B = 6988.978201 C = 8212.228631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.097 4.097 4 C -0.065 4.065 5 H 0.093 0.907 6 C 0.535 3.465 7 O -0.551 6.551 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.139 4.139 11 C 0.251 3.749 12 O -0.583 6.583 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.118 3.882 22 C -0.071 4.071 23 C -0.102 4.102 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.110 4.110 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.385 0.615 40 H 0.270 0.730 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 7.800 8.364 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.135 4.135 4 C -0.087 4.087 5 H 0.111 0.889 6 C 0.323 3.677 7 O -0.430 6.430 8 N -0.335 5.335 9 C -0.023 4.023 10 C -0.178 4.178 11 C 0.210 3.790 12 O -0.393 6.393 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.003 4.003 22 C -0.071 4.071 23 C -0.120 4.120 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.463 8.130 7.648 16.730 hybrid contribution 1.274 -1.032 -0.019 1.640 sum -11.189 7.098 7.628 15.289 Atomic orbital electron populations 1.21724 0.95740 1.01447 1.01603 1.21568 0.95980 0.96658 1.02338 1.21514 0.91454 0.97500 1.03056 1.20358 0.96952 0.93522 0.97829 0.88903 1.19877 0.79754 0.78008 0.90048 1.90631 1.62254 1.61143 1.28979 1.48580 1.24361 1.47932 1.12633 1.22155 0.93630 0.99990 0.86485 1.23247 0.95331 0.97937 1.01302 1.19598 0.86221 0.84193 0.88974 1.86113 1.27403 1.38957 1.86865 1.21449 0.96402 1.10797 1.28815 0.91707 1.24983 0.96934 0.96864 0.94142 1.69555 1.09414 1.38873 1.35912 0.86460 0.78104 0.82374 0.79966 1.19970 1.21084 1.20026 1.22379 0.93391 0.94617 0.89958 1.19444 0.98798 0.93864 0.95038 1.21158 0.99350 0.92982 0.98523 1.21130 0.98641 0.96191 0.97863 1.21136 0.99063 0.99493 0.94351 1.21079 1.00180 0.93461 0.99187 1.21047 0.97895 0.96436 0.97443 0.92873 0.92948 0.92692 0.91491 0.92190 0.91297 0.90421 0.92353 0.93017 0.89969 0.91407 0.76310 0.92012 0.91203 0.91141 0.85436 0.86151 0.86292 0.86087 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.56 5.67 -26.73 -0.15 -1.71 16 3 C -0.10 -1.24 4.18 -26.73 -0.11 -1.35 16 4 C -0.07 -0.94 2.00 -92.92 -0.19 -1.13 16 5 H 0.09 1.21 6.70 -51.93 -0.35 0.86 16 6 C 0.54 10.05 5.64 -10.99 -0.06 9.99 16 7 O -0.55 -11.82 15.68 5.56 0.09 -11.73 16 8 N -0.60 -12.03 3.33 -170.52 -0.57 -12.60 16 9 C 0.10 1.82 6.15 -3.06 -0.02 1.80 16 10 C -0.14 -2.97 5.66 -24.74 -0.14 -3.11 16 11 C 0.25 6.07 0.89 -89.46 -0.08 5.99 16 12 O -0.58 -15.21 13.19 -35.23 -0.46 -15.67 16 13 C -0.54 -13.90 8.26 -34.44 -0.28 -14.19 16 14 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 15 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 16 N -0.90 -23.02 10.81 55.43 0.60 -22.42 16 17 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.12 2.67 6.10 -2.53 -0.02 2.65 16 22 C -0.07 -1.02 4.77 -104.62 -0.50 -1.52 16 23 C -0.10 -1.50 8.86 -39.58 -0.35 -1.85 16 24 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 27 C -0.11 -1.42 9.67 -39.58 -0.38 -1.80 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.98 7.43 -51.93 -0.39 0.59 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.08 1.08 7.12 -51.93 -0.37 0.71 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.79 7.72 -51.93 -0.40 0.39 16 37 H 0.08 1.83 7.86 -51.93 -0.41 1.43 16 38 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 39 H 0.38 10.10 6.93 45.56 0.32 10.41 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.07 1.51 8.01 -51.93 -0.42 1.10 16 42 H 0.07 1.71 7.99 -51.93 -0.41 1.30 16 43 H 0.13 1.97 7.16 -52.49 -0.38 1.59 16 44 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -28.70 379.09 -9.84 -38.54 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -6.99 Total: 14.34 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.20 Total: -11.19 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.03 Total: -35.02 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.38 Total: -27.40 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.70 -9.84 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.941 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds