Wall clock time and date at job start Tue Mar 31 2020 12:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46802 * 2 1 4 4 C 1.53002 * 109.47037 * 175.02647 * 3 2 1 5 5 H 1.09005 * 109.46966 * 305.70428 * 4 3 2 6 6 C 1.50700 * 109.47159 * 65.70355 * 4 3 2 7 7 O 1.21282 * 119.99789 * 35.02232 * 6 4 3 8 8 N 1.34771 * 119.99812 * 215.02711 * 6 4 3 9 9 C 1.47025 * 125.64942 * 354.98071 * 8 6 4 10 10 C 1.54328 * 107.27094 * 181.04215 * 9 8 6 11 11 C 1.55448 * 102.96937 * 22.19404 * 10 9 8 12 12 O 1.42896 * 111.00890 * 82.52207 * 11 10 9 13 13 C 1.50695 * 111.11884 * 206.46236 * 11 10 9 14 14 H 1.07998 * 119.99656 * 112.09953 * 13 11 10 15 15 C 1.37872 * 120.00168 * 292.10675 * 13 11 10 16 16 N 1.31514 * 119.99941 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99978 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47113 * 59.99755 * 17 15 13 19 19 H 1.48501 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46930 * 299.99545 * 17 15 13 21 21 C 1.47424 * 125.64688 * 174.96298 * 8 6 4 22 22 C 1.50703 * 109.47160 * 185.70348 * 4 3 2 23 23 C 1.38236 * 119.99953 * 299.72756 * 22 4 3 24 24 C 1.38231 * 119.99569 * 179.74350 * 23 22 4 25 25 C 1.38234 * 120.00228 * 0.52950 * 24 23 22 26 26 C 1.38233 * 120.00031 * 359.74231 * 25 24 23 27 27 C 1.38231 * 120.00115 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.46862 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47306 * 299.99726 * 1 2 3 30 30 H 1.08999 * 109.47170 * 59.99552 * 1 2 3 31 31 H 1.08993 * 109.46946 * 240.00351 * 2 1 3 32 32 H 1.08996 * 109.46970 * 119.99716 * 2 1 3 33 33 H 1.09010 * 109.47085 * 55.02954 * 3 2 1 34 34 H 1.08993 * 109.47448 * 295.03007 * 3 2 1 35 35 H 1.08995 * 109.88780 * 300.46358 * 9 8 6 36 36 H 1.08997 * 109.88013 * 61.62775 * 9 8 6 37 37 H 1.08992 * 110.71921 * 140.56085 * 10 9 8 38 38 H 1.09001 * 110.72045 * 263.65286 * 10 9 8 39 39 H 0.96703 * 114.00361 * 67.96215 * 12 11 10 40 40 H 0.96999 * 120.00094 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.37091 * 274.72593 * 21 8 6 42 42 H 1.09001 * 110.36612 * 36.94412 * 21 8 6 43 43 H 1.08002 * 119.99834 * 359.97438 * 23 22 4 44 44 H 1.08008 * 119.99796 * 180.29569 * 24 23 22 45 45 H 1.08006 * 120.00082 * 179.77166 * 25 24 23 46 46 H 1.08000 * 119.99968 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00464 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 0.1251 5 1 3.8581 0.8695 1.0035 6 6 4.1707 0.8233 -1.1071 7 8 3.6484 0.9889 -2.1890 8 7 5.2929 0.0837 -1.0066 9 6 6.0839 -0.1113 0.2173 10 6 7.2864 -1.0054 -0.1519 11 6 7.4158 -0.7995 -1.6873 12 8 8.1426 0.3943 -1.9846 13 6 8.0549 -1.9960 -2.3436 14 1 7.4755 -2.6223 -3.0057 15 6 9.3792 -2.2913 -2.0987 16 7 10.0848 -1.5284 -1.2926 17 14 10.1712 -3.7749 -2.9117 18 1 10.1040 -3.6252 -4.3876 19 1 11.5913 -3.8719 -2.4886 20 1 9.4480 -5.0067 -2.5056 21 6 5.9304 -0.6640 -2.1057 22 6 4.0556 2.8623 0.2659 23 6 3.8062 3.7827 -0.7349 24 6 4.2517 5.0846 -0.6032 25 6 4.9562 5.4634 0.5243 26 6 5.2105 4.5416 1.5225 27 6 4.7599 3.2412 1.3935 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6057 1.9815 0.8422 34 1 1.7512 1.9301 -0.9311 35 1 6.4373 0.8509 0.5877 36 1 5.4761 -0.6027 0.9770 37 1 8.1883 -0.6692 0.3594 38 1 7.0776 -2.0490 0.0835 39 1 9.0775 0.3568 -1.7403 40 1 11.0166 -1.7359 -1.1206 41 1 5.4742 -1.6485 -2.2094 42 1 5.8486 -0.1084 -3.0399 43 1 3.2599 3.4855 -1.6179 44 1 4.0527 5.8050 -1.3829 45 1 5.3075 6.4797 0.6255 46 1 5.7613 4.8374 2.4031 47 1 4.9589 2.5208 2.1732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:41 Heat of formation + Delta-G solvation = -94.422030 kcal Electronic energy + Delta-G solvation = -27529.891681 eV Core-core repulsion = 23868.877515 eV Total energy + Delta-G solvation = -3661.014167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56744 -39.97771 -38.92633 -36.38595 -36.10367 -34.14755 -33.42868 -31.79368 -31.51315 -30.13267 -29.48994 -27.26729 -25.48251 -24.04340 -23.53796 -22.43738 -22.20081 -21.45328 -19.90911 -19.17848 -18.36151 -17.81550 -16.97749 -16.73418 -16.53638 -16.23875 -16.01844 -15.71713 -15.66086 -15.02534 -14.81876 -14.55699 -14.37077 -14.20073 -13.82435 -13.74830 -13.60161 -13.42049 -13.29739 -13.17307 -13.06040 -12.65427 -12.59241 -12.50823 -12.42075 -12.27758 -12.11505 -11.88569 -11.85498 -11.63957 -11.56039 -11.31104 -10.86639 -10.63736 -10.15999 -9.81567 -9.61903 -9.55838 -8.25725 -6.40696 0.37876 0.50510 1.43108 1.45214 1.52121 1.63307 2.06367 2.39710 2.86236 2.99134 3.54777 3.60143 3.82154 3.86642 4.00606 4.05858 4.14032 4.17819 4.22002 4.30940 4.32197 4.35330 4.41496 4.58817 4.62682 4.65097 4.68968 4.70285 4.83977 4.87596 4.91243 5.01489 5.09860 5.15742 5.16084 5.21979 5.28584 5.34595 5.42135 5.42987 5.50708 5.56605 5.62142 5.67377 5.76264 6.04998 6.10981 6.60714 6.65729 7.16052 7.30821 7.44652 8.80535 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.004005 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.003306 B = 6988.978201 C = 8212.228631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.054 4.054 5 H 0.115 0.885 6 C 0.531 3.469 7 O -0.587 6.587 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.129 4.129 11 C 0.237 3.763 12 O -0.597 6.597 13 C -0.564 4.564 14 H 0.056 0.944 15 C 0.038 3.962 16 N -0.910 5.910 17 Si 0.961 3.039 18 H -0.279 1.279 19 H -0.278 1.278 20 H -0.269 1.269 21 C 0.123 3.877 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.115 4.115 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.381 0.619 40 H 0.273 0.727 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 8.135 11.023 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.130 4.130 4 C -0.075 4.075 5 H 0.133 0.867 6 C 0.321 3.679 7 O -0.468 6.468 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.168 4.168 11 C 0.196 3.804 12 O -0.407 6.407 13 C -0.602 4.602 14 H 0.074 0.926 15 C -0.164 4.164 16 N -0.549 5.549 17 Si 0.786 3.214 18 H -0.205 1.205 19 H -0.203 1.203 20 H -0.194 1.194 21 C 0.000 4.000 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.124 0.876 44 H 0.152 0.848 45 H 0.164 0.836 46 H 0.168 0.832 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.638 8.472 10.329 18.390 hybrid contribution 1.343 -1.063 -0.900 1.935 sum -11.296 7.408 9.429 16.473 Atomic orbital electron populations 1.21703 0.94151 1.02144 1.02196 1.21560 0.97442 0.96016 1.01422 1.21504 0.90455 0.97960 1.03051 1.20373 0.97583 0.93694 0.95854 0.86694 1.20761 0.78918 0.77023 0.91182 1.90608 1.63097 1.62098 1.30948 1.48680 1.24932 1.48155 1.12323 1.22182 0.92782 1.00117 0.86361 1.23032 0.96379 0.98628 0.98750 1.19797 0.86388 0.83084 0.91099 1.86102 1.27213 1.40076 1.87293 1.21684 0.97248 1.11664 1.29614 0.92554 1.25605 0.97136 0.99097 0.94514 1.69616 1.09589 1.39607 1.36100 0.85569 0.77496 0.79692 0.78611 1.20504 1.20339 1.19385 1.22138 0.93219 0.94734 0.89874 1.19509 1.00042 0.93441 0.95903 1.21170 1.00568 0.94333 0.98418 1.21377 0.98739 0.95766 0.98993 1.21515 0.98016 1.00955 0.93611 1.21494 0.99537 0.92994 1.00006 1.21348 0.97134 0.97546 0.97280 0.92161 0.91062 0.93389 0.94734 0.90665 0.88741 0.92492 0.91520 0.89008 0.91096 0.91410 0.76800 0.91752 0.90893 0.94151 0.87604 0.84813 0.83572 0.83222 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.13 -2.95 5.67 30.60 0.17 -2.78 16 3 C -0.09 -2.24 4.18 30.60 0.13 -2.12 16 4 C -0.05 -1.49 2.00 -12.28 -0.02 -1.52 16 5 H 0.12 2.63 6.70 -2.38 -0.02 2.61 16 6 C 0.53 20.11 5.64 87.66 0.49 20.61 16 7 O -0.59 -26.33 15.68 -3.04 -0.05 -26.38 16 8 N -0.61 -24.27 3.33 -811.79 -2.70 -26.97 16 9 C 0.11 3.71 6.15 86.73 0.53 4.24 16 10 C -0.13 -5.43 5.66 31.89 0.18 -5.25 16 11 C 0.24 11.66 0.89 -10.04 -0.01 11.65 16 12 O -0.60 -31.88 13.19 -148.98 -1.96 -33.85 16 13 C -0.56 -29.75 8.26 25.60 0.21 -29.54 16 14 H 0.06 2.98 7.77 -2.91 -0.02 2.95 16 15 C 0.04 1.92 5.30 84.65 0.45 2.36 16 16 N -0.91 -46.56 10.81 21.45 0.23 -46.32 16 17 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 C 0.12 5.74 6.10 86.86 0.53 6.27 16 22 C -0.09 -2.43 4.77 -19.86 -0.09 -2.53 16 23 C -0.13 -3.74 8.86 22.27 0.20 -3.54 16 24 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 25 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 26 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 27 C -0.12 -2.62 9.67 22.27 0.22 -2.41 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.03 1.02 7.43 -2.39 -0.02 1.00 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 1.63 7.12 -2.39 -0.02 1.61 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.47 7.72 -2.39 -0.02 2.45 16 37 H 0.07 3.12 7.86 -2.39 -0.02 3.11 16 38 H 0.07 2.81 8.04 -2.39 -0.02 2.79 16 39 H 0.38 20.43 6.93 -74.06 -0.51 19.92 16 40 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 41 H 0.07 3.28 8.01 -2.39 -0.02 3.26 16 42 H 0.04 2.07 7.99 -2.39 -0.02 2.05 16 43 H 0.11 3.49 7.16 -2.91 -0.02 3.47 16 44 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 47 H 0.14 2.56 7.95 -2.91 -0.02 2.53 16 Total: -1.00 -63.79 379.09 2.35 -61.44 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: 0.44 Total: 43.26 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.37 Total: -14.19 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -2.47 Total: -73.29 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.01 Total: -60.23 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -63.79 2.35 -61.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.981 kcal (2) G-P(sol) polarization free energy of solvation -63.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds