Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.53004 * 109.47156 * 240.00216 * 2 1 3 5 5 C 1.50707 * 109.47036 * 60.00028 * 4 2 1 6 6 O 1.21283 * 119.99790 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99957 * 180.02562 * 5 4 2 8 8 C 1.47022 * 125.64718 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27137 * 181.02473 * 8 7 5 10 10 C 1.55154 * 102.94052 * 22.19426 * 9 8 7 11 11 O 1.42905 * 111.00432 * 82.56907 * 10 9 8 12 12 C 1.50700 * 111.00913 * 206.42130 * 10 9 8 13 13 H 1.07994 * 120.00244 * 118.54392 * 12 10 9 14 14 C 1.37878 * 119.99623 * 298.55308 * 12 10 9 15 15 N 1.31512 * 120.00362 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99540 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46991 * 90.00059 * 16 14 12 18 18 H 1.48499 * 109.46866 * 210.00004 * 16 14 12 19 19 H 1.48502 * 109.47426 * 329.99654 * 16 14 12 20 20 C 1.47426 * 125.64849 * 179.71489 * 7 5 4 21 21 C 1.50698 * 109.47221 * 120.00468 * 2 1 3 22 22 C 1.38228 * 120.00201 * 120.27671 * 21 2 1 23 23 C 1.38238 * 120.00120 * 180.23979 * 22 21 2 24 24 C 1.38234 * 119.99675 * 359.47825 * 23 22 21 25 25 C 1.38234 * 120.00240 * 0.26327 * 24 23 22 26 26 C 1.38234 * 119.99739 * 299.99475 * 21 2 1 27 27 H 1.09000 * 109.47228 * 300.00365 * 1 2 3 28 28 H 1.09006 * 109.47107 * 59.99918 * 1 2 3 29 29 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47076 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47301 * 300.00277 * 3 2 1 32 32 H 1.09001 * 109.46971 * 60.00386 * 3 2 1 33 33 H 1.08994 * 109.47409 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.46832 * 300.00542 * 4 2 1 35 35 H 1.08995 * 109.88958 * 300.44611 * 8 7 5 36 36 H 1.09005 * 109.87964 * 61.45718 * 8 7 5 37 37 H 1.08995 * 110.71678 * 140.55535 * 9 8 7 38 38 H 1.09003 * 110.71762 * 263.65670 * 9 8 7 39 39 H 0.96703 * 113.99789 * 61.45226 * 11 10 9 40 40 H 0.96998 * 119.99668 * 180.02562 * 15 14 12 41 41 H 1.08991 * 110.36970 * 274.74574 * 20 7 5 42 42 H 1.09001 * 110.36041 * 37.07172 * 20 7 5 43 43 H 1.08004 * 120.00256 * 359.97438 * 22 21 2 44 44 H 1.08002 * 120.00519 * 179.76445 * 23 22 21 45 45 H 1.07999 * 120.00009 * 180.28390 * 24 23 22 46 46 H 1.07997 * 120.00460 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.00310 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 8 0.8400 0.9751 -2.3684 7 7 1.8628 -0.4714 -3.7039 8 6 2.6953 -1.6508 -3.9823 9 6 2.8154 -1.7753 -5.5158 10 6 2.5137 -0.3345 -6.0060 11 8 3.6798 0.4879 -5.9277 12 6 1.9564 -0.3457 -7.4062 13 1 0.9657 0.0399 -7.5962 14 6 2.7114 -0.8486 -8.4445 15 7 3.9180 -1.3179 -8.2132 16 14 2.0203 -0.8632 -10.1800 17 1 2.3754 0.4056 -10.8648 18 1 2.5936 -2.0086 -10.9314 19 1 0.5426 -0.9985 -10.1233 20 6 1.4372 0.1200 -4.9855 21 6 2.0323 -0.7105 1.2304 22 6 2.8317 -1.8310 1.1035 23 6 3.2884 -2.4856 2.2321 24 6 2.9546 -2.0134 3.4877 25 6 2.1595 -0.8897 3.6146 26 6 1.6984 -0.2382 2.4859 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 3.6839 -1.5190 -3.5425 36 1 2.2231 -2.5432 -3.5714 37 1 3.8235 -2.0763 -5.8004 38 1 2.0798 -2.4797 -5.9043 39 1 4.4143 0.1822 -6.4773 40 1 4.4491 -1.6713 -8.9439 41 1 0.4562 -0.2593 -5.2712 42 1 1.4184 1.2075 -4.9137 43 1 3.0960 -2.1976 0.1226 44 1 3.9099 -3.3634 2.1331 45 1 3.3151 -2.5221 4.3695 46 1 1.8990 -0.5204 4.5955 47 1 1.0772 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -65.185174 kcal Electronic energy + Delta-G solvation = -27122.587800 eV Core-core repulsion = 23462.841439 eV Total energy + Delta-G solvation = -3659.746361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40003 -39.15990 -37.54852 -35.56150 -34.29036 -32.24977 -31.23689 -30.20648 -29.82284 -28.59403 -27.61006 -27.06964 -24.97494 -23.17667 -22.57948 -22.01990 -20.01109 -19.40489 -18.38666 -17.47366 -17.10943 -16.25669 -15.46106 -15.25366 -15.04739 -14.97788 -14.69726 -14.41259 -14.15106 -13.80634 -13.66030 -13.40156 -13.24736 -12.86235 -12.66359 -12.36037 -12.08644 -11.97561 -11.75886 -11.68718 -11.47099 -11.37668 -11.28786 -11.09122 -10.92705 -10.88458 -10.72854 -10.61737 -10.50962 -10.48620 -10.04658 -9.41651 -9.08831 -9.01036 -8.75365 -8.70179 -8.24992 -7.96991 -6.31036 -4.38991 1.28602 1.30727 3.07101 3.18570 3.26024 3.29022 3.54283 3.70399 4.24755 4.56585 4.65319 4.88289 4.93996 4.98486 5.00715 5.04403 5.12972 5.35029 5.40308 5.48522 5.52449 5.63331 5.67443 5.74567 5.85124 5.86679 5.89268 5.91798 5.99680 6.05965 6.14160 6.16119 6.28121 6.34718 6.41268 6.41800 6.55866 6.58249 6.61023 6.69286 6.87269 6.91796 6.97012 7.26863 7.31701 7.70777 7.99712 8.15306 8.62833 8.67837 9.28007 9.36790 10.76327 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002823 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.346006 B = 9914.782549 C =10417.467547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 C -0.149 4.149 4 C -0.129 4.129 5 C 0.525 3.475 6 O -0.547 6.547 7 N -0.606 5.606 8 C 0.098 3.902 9 C -0.136 4.136 10 C 0.248 3.752 11 O -0.582 6.582 12 C -0.535 4.535 13 H 0.064 0.936 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.120 3.880 21 C -0.062 4.062 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.114 4.114 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.380 0.620 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -3.443 18.351 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.006 4.006 3 C -0.206 4.206 4 C -0.169 4.169 5 C 0.314 3.686 6 O -0.427 6.427 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.175 4.175 10 C 0.207 3.793 11 O -0.391 6.391 12 C -0.573 4.573 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.730 3.270 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.002 4.002 21 C -0.062 4.062 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.132 4.132 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.577 -2.656 18.804 19.056 hybrid contribution 0.255 -0.691 -1.290 1.485 sum -1.322 -3.347 17.514 17.879 Atomic orbital electron populations 1.22117 0.93093 1.01586 1.03754 1.19205 0.96418 0.95252 0.89708 1.22122 1.00260 0.94484 1.03733 1.21810 1.02310 1.00294 0.92492 1.20086 0.80552 0.84484 0.83492 1.90523 1.39410 1.26967 1.85845 1.48659 1.50002 1.29365 1.05816 1.22193 0.93714 0.86747 0.99848 1.23173 1.03392 1.01357 0.89558 1.19647 0.82841 0.85132 0.91656 1.86142 1.26207 1.55639 1.71077 1.21442 1.02405 1.41559 0.91915 0.91750 1.24986 0.94778 0.93675 0.99547 1.69713 1.09778 1.41062 1.32882 0.86426 0.79361 0.77760 0.83491 1.20401 1.21073 1.19715 1.22401 0.97782 0.98671 0.81302 1.19959 0.96529 0.95156 0.94583 1.21247 0.98207 0.95787 0.99039 1.21149 0.99978 0.99832 0.92624 1.21105 0.99307 0.97167 0.97361 1.21111 0.98274 0.96076 0.98351 1.20981 1.00319 1.00053 0.91878 0.93075 0.89016 0.93511 0.93413 0.88982 0.93096 0.89001 0.89137 0.92457 0.92924 0.89559 0.91378 0.77013 0.92239 0.91112 0.91162 0.85622 0.86220 0.86463 0.86356 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 7.99 37.15 0.30 -1.64 16 2 C -0.01 -0.07 0.60 -155.66 -0.09 -0.16 16 3 C -0.15 -2.02 7.99 37.16 0.30 -1.72 16 4 C -0.13 -1.75 2.62 -27.88 -0.07 -1.82 16 5 C 0.52 9.27 7.26 -10.98 -0.08 9.19 16 6 O -0.55 -10.83 11.60 5.56 0.06 -10.77 16 7 N -0.61 -11.53 3.32 -170.37 -0.57 -12.09 16 8 C 0.10 1.70 6.48 -3.06 -0.02 1.68 16 9 C -0.14 -2.83 5.37 -24.90 -0.13 -2.97 16 10 C 0.25 5.83 0.87 -89.50 -0.08 5.75 16 11 O -0.58 -14.51 13.17 -35.23 -0.46 -14.98 16 12 C -0.53 -13.68 8.27 -34.44 -0.28 -13.96 16 13 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 14 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 15 N -0.90 -22.58 10.76 55.43 0.60 -21.99 16 16 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 20 C 0.12 2.62 6.09 -2.41 -0.01 2.60 16 21 C -0.06 -0.73 4.76 -104.63 -0.50 -1.22 16 22 C -0.12 -1.37 8.98 -39.58 -0.36 -1.72 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.11 -1.23 8.71 -39.58 -0.34 -1.57 16 27 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 28 H 0.09 1.42 5.51 -51.93 -0.29 1.13 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.09 1.49 5.51 -51.93 -0.29 1.20 16 32 H 0.05 0.61 7.39 -51.93 -0.38 0.22 16 33 H 0.09 1.17 7.50 -51.93 -0.39 0.78 16 34 H 0.09 1.10 7.53 -51.93 -0.39 0.71 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.88 7.55 -51.93 -0.39 1.49 16 38 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 39 H 0.38 9.44 7.57 45.56 0.34 9.79 16 40 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 41 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 42 H 0.07 1.63 8.03 -51.93 -0.42 1.22 16 43 H 0.13 1.26 5.90 -52.48 -0.31 0.95 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.12 1.17 7.10 -52.49 -0.37 0.80 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -27.44 367.03 -9.13 -36.57 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.60 Total: 13.39 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.67 Total: -10.57 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.03 Total: -34.08 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.40 Total: -25.74 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.44 -9.13 -36.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.616 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds