Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.53004 * 109.47156 * 240.00216 * 2 1 3 5 5 C 1.50707 * 109.47036 * 60.00028 * 4 2 1 6 6 O 1.21283 * 119.99790 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99957 * 180.02562 * 5 4 2 8 8 C 1.47022 * 125.64718 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27137 * 181.02473 * 8 7 5 10 10 C 1.55154 * 102.94052 * 22.19426 * 9 8 7 11 11 O 1.42905 * 111.00432 * 82.56907 * 10 9 8 12 12 C 1.50700 * 111.00913 * 206.42130 * 10 9 8 13 13 H 1.07994 * 120.00244 * 118.54392 * 12 10 9 14 14 C 1.37878 * 119.99623 * 298.55308 * 12 10 9 15 15 N 1.31512 * 120.00362 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99540 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46991 * 90.00059 * 16 14 12 18 18 H 1.48499 * 109.46866 * 210.00004 * 16 14 12 19 19 H 1.48502 * 109.47426 * 329.99654 * 16 14 12 20 20 C 1.47426 * 125.64849 * 179.71489 * 7 5 4 21 21 C 1.50698 * 109.47221 * 120.00468 * 2 1 3 22 22 C 1.38228 * 120.00201 * 120.27671 * 21 2 1 23 23 C 1.38238 * 120.00120 * 180.23979 * 22 21 2 24 24 C 1.38234 * 119.99675 * 359.47825 * 23 22 21 25 25 C 1.38234 * 120.00240 * 0.26327 * 24 23 22 26 26 C 1.38234 * 119.99739 * 299.99475 * 21 2 1 27 27 H 1.09000 * 109.47228 * 300.00365 * 1 2 3 28 28 H 1.09006 * 109.47107 * 59.99918 * 1 2 3 29 29 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47076 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47301 * 300.00277 * 3 2 1 32 32 H 1.09001 * 109.46971 * 60.00386 * 3 2 1 33 33 H 1.08994 * 109.47409 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.46832 * 300.00542 * 4 2 1 35 35 H 1.08995 * 109.88958 * 300.44611 * 8 7 5 36 36 H 1.09005 * 109.87964 * 61.45718 * 8 7 5 37 37 H 1.08995 * 110.71678 * 140.55535 * 9 8 7 38 38 H 1.09003 * 110.71762 * 263.65670 * 9 8 7 39 39 H 0.96703 * 113.99789 * 61.45226 * 11 10 9 40 40 H 0.96998 * 119.99668 * 180.02562 * 15 14 12 41 41 H 1.08991 * 110.36970 * 274.74574 * 20 7 5 42 42 H 1.09001 * 110.36041 * 37.07172 * 20 7 5 43 43 H 1.08004 * 120.00256 * 359.97438 * 22 21 2 44 44 H 1.08002 * 120.00519 * 179.76445 * 23 22 21 45 45 H 1.07999 * 120.00009 * 180.28390 * 24 23 22 46 46 H 1.07997 * 120.00460 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.00310 * 0.02562 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 8 0.8400 0.9751 -2.3684 7 7 1.8628 -0.4714 -3.7039 8 6 2.6953 -1.6508 -3.9823 9 6 2.8154 -1.7753 -5.5158 10 6 2.5137 -0.3345 -6.0060 11 8 3.6798 0.4879 -5.9277 12 6 1.9564 -0.3457 -7.4062 13 1 0.9657 0.0399 -7.5962 14 6 2.7114 -0.8486 -8.4445 15 7 3.9180 -1.3179 -8.2132 16 14 2.0203 -0.8632 -10.1800 17 1 2.3754 0.4056 -10.8648 18 1 2.5936 -2.0086 -10.9314 19 1 0.5426 -0.9985 -10.1233 20 6 1.4372 0.1200 -4.9855 21 6 2.0323 -0.7105 1.2304 22 6 2.8317 -1.8310 1.1035 23 6 3.2884 -2.4856 2.2321 24 6 2.9546 -2.0134 3.4877 25 6 2.1595 -0.8897 3.6146 26 6 1.6984 -0.2382 2.4859 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 3.6839 -1.5190 -3.5425 36 1 2.2231 -2.5432 -3.5714 37 1 3.8235 -2.0763 -5.8004 38 1 2.0798 -2.4797 -5.9043 39 1 4.4143 0.1822 -6.4773 40 1 4.4491 -1.6713 -8.9439 41 1 0.4562 -0.2593 -5.2712 42 1 1.4184 1.2075 -4.9137 43 1 3.0960 -2.1976 0.1226 44 1 3.9099 -3.3634 2.1331 45 1 3.3151 -2.5221 4.3695 46 1 1.8990 -0.5204 4.5955 47 1 1.0772 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -80.073121 kcal Electronic energy + Delta-G solvation = -27123.233390 eV Core-core repulsion = 23462.841439 eV Total energy + Delta-G solvation = -3660.391951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56631 -40.31770 -39.04523 -36.68779 -35.97624 -34.21040 -32.11949 -31.60320 -30.76531 -30.09576 -28.99706 -28.13210 -26.72456 -24.23961 -23.68595 -23.04114 -21.64097 -20.67162 -19.67075 -19.08040 -18.45049 -17.37067 -16.96796 -16.82591 -16.51258 -16.07583 -15.77118 -15.70501 -15.47406 -15.08970 -14.88369 -14.48648 -14.29572 -14.14363 -14.08849 -13.71836 -13.38676 -13.32819 -13.22069 -13.07032 -12.84270 -12.74294 -12.63078 -12.43670 -12.33842 -12.27572 -12.23919 -11.91363 -11.79879 -11.63027 -11.42891 -11.23711 -10.66783 -10.46034 -10.13177 -9.74055 -9.55328 -9.46565 -8.23424 -6.37961 0.53099 0.57659 1.41814 1.45266 1.53392 1.69241 2.10311 2.40773 2.95613 3.01519 3.49055 3.66349 3.80383 3.96611 4.00894 4.08070 4.21852 4.22732 4.31785 4.35890 4.37900 4.41549 4.57580 4.62341 4.69560 4.70326 4.73658 4.75190 4.84123 4.91822 5.03196 5.07587 5.09647 5.19300 5.20887 5.24204 5.31157 5.46025 5.46799 5.48910 5.56129 5.69864 5.70310 5.78306 5.80488 6.10320 6.19706 6.64545 6.71738 7.25559 7.32207 7.40719 8.82225 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.002823 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.346006 B = 9914.782549 C =10417.467547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.000 4.000 3 C -0.145 4.145 4 C -0.119 4.119 5 C 0.519 3.481 6 O -0.573 6.573 7 N -0.613 5.613 8 C 0.105 3.895 9 C -0.126 4.126 10 C 0.233 3.767 11 O -0.593 6.593 12 C -0.561 4.561 13 H 0.053 0.947 14 C 0.038 3.962 15 N -0.905 5.905 16 Si 0.957 3.043 17 H -0.281 1.281 18 H -0.277 1.277 19 H -0.272 1.272 20 C 0.127 3.873 21 C -0.075 4.075 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.126 4.126 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.377 0.623 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -5.189 20.236 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 C -0.202 4.202 4 C -0.159 4.159 5 C 0.310 3.690 6 O -0.454 6.454 7 N -0.345 5.345 8 C -0.017 4.017 9 C -0.165 4.165 10 C 0.193 3.807 11 O -0.401 6.401 12 C -0.600 4.600 13 H 0.071 0.929 14 C -0.164 4.164 15 N -0.544 5.544 16 Si 0.783 3.217 17 H -0.207 1.207 18 H -0.203 1.203 19 H -0.197 1.197 20 C 0.004 3.996 21 C -0.075 4.075 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.143 4.143 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.086 -4.412 20.708 21.201 hybrid contribution 0.102 -0.098 -1.830 1.836 sum -0.984 -4.510 18.878 19.434 Atomic orbital electron populations 1.22034 0.93540 1.01681 1.02868 1.19111 0.96043 0.94705 0.90213 1.22045 1.00191 0.95213 1.02801 1.21847 1.02942 1.00804 0.90278 1.20903 0.79879 0.84253 0.83985 1.90534 1.40437 1.28215 1.86202 1.48738 1.50600 1.29891 1.05273 1.22210 0.94771 0.87391 0.97341 1.22944 1.02331 0.99080 0.92163 1.19818 0.82635 0.86762 0.91458 1.86130 1.26550 1.56464 1.70953 1.21667 1.02328 1.42369 0.93587 0.92915 1.25580 0.95128 0.93318 1.02387 1.69773 1.10133 1.40798 1.33693 0.85569 0.78696 0.77646 0.79754 1.20651 1.20254 1.19716 1.22119 0.97423 0.97242 0.82846 1.19830 0.97753 0.95876 0.94079 1.21412 0.98303 0.95749 0.99978 1.21440 0.99917 1.00331 0.92475 1.21458 0.98596 0.96935 0.98153 1.21403 0.97891 0.96031 0.98928 1.21129 1.00699 1.00492 0.92047 0.91954 0.91825 0.92862 0.93354 0.92002 0.91848 0.87694 0.86954 0.90906 0.89357 0.90702 0.92032 0.77373 0.91998 0.91227 0.93711 0.84874 0.84294 0.84192 0.84332 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 7.99 71.98 0.58 -3.08 16 2 C 0.00 -0.01 0.60 -52.93 -0.03 -0.04 16 3 C -0.15 -3.89 7.99 71.98 0.58 -3.31 16 4 C -0.12 -3.01 2.62 29.85 0.08 -2.93 16 5 C 0.52 18.12 7.26 87.66 0.64 18.75 16 6 O -0.57 -23.22 11.60 -3.04 -0.04 -23.26 16 7 N -0.61 -23.02 3.32 -811.33 -2.70 -25.71 16 8 C 0.10 3.45 6.48 86.73 0.56 4.01 16 9 C -0.13 -5.21 5.37 31.78 0.17 -5.04 16 10 C 0.23 11.17 0.87 -10.07 -0.01 11.17 16 11 O -0.59 -30.18 13.17 -148.98 -1.96 -32.14 16 12 C -0.56 -29.29 8.27 25.60 0.21 -29.08 16 13 H 0.05 2.79 7.79 -2.91 -0.02 2.77 16 14 C 0.04 1.90 5.29 84.66 0.45 2.34 16 15 N -0.91 -45.66 10.76 21.45 0.23 -45.43 16 16 Si 0.96 40.90 29.54 68.60 2.03 42.93 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C 0.13 5.67 6.09 86.93 0.53 6.20 16 21 C -0.08 -1.60 4.76 -19.87 -0.09 -1.69 16 22 C -0.14 -2.61 8.98 22.27 0.20 -2.41 16 23 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 25 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 26 C -0.13 -2.43 8.71 22.27 0.19 -2.24 16 27 H 0.06 1.39 7.39 -2.39 -0.02 1.38 16 28 H 0.06 1.99 5.51 -2.38 -0.01 1.98 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 2.05 5.51 -2.39 -0.01 2.03 16 32 H 0.06 1.48 7.39 -2.39 -0.02 1.46 16 33 H 0.10 2.42 7.50 -2.39 -0.02 2.40 16 34 H 0.11 2.37 7.53 -2.39 -0.02 2.35 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.07 3.24 7.55 -2.39 -0.02 3.22 16 38 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 39 H 0.38 19.14 7.57 -74.06 -0.56 18.58 16 40 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 41 H 0.07 3.06 8.03 -2.39 -0.02 3.05 16 42 H 0.04 2.18 8.03 -2.39 -0.02 2.16 16 43 H 0.13 2.24 5.90 -2.91 -0.02 2.22 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.12 2.20 7.10 -2.91 -0.02 2.18 16 Total: -1.00 -59.83 367.03 2.69 -57.14 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.41 Total: 39.27 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 4.72 Total: -12.80 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -2.47 Total: -71.14 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -2.00 Total: -55.40 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -59.83 2.69 -57.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.933 kcal (2) G-P(sol) polarization free energy of solvation -59.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds