Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 O 1.21279 * 119.99692 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00146 * 180.02562 * 5 4 2 8 8 C 1.47423 * 125.64537 * 0.02562 * 7 5 4 9 9 C 1.54915 * 104.83059 * 204.09196 * 8 7 5 10 10 C 1.55153 * 101.58374 * 322.99847 * 9 8 7 11 11 O 1.42904 * 110.71763 * 276.95811 * 10 9 8 12 12 C 1.50697 * 110.72190 * 153.86211 * 10 9 8 13 13 H 1.07995 * 120.00051 * 241.44672 * 12 10 9 14 14 C 1.37876 * 119.99924 * 61.45130 * 12 10 9 15 15 N 1.31524 * 120.00125 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00096 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47031 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47144 * 119.99901 * 16 14 12 19 19 H 1.48503 * 109.47291 * 240.00153 * 16 14 12 20 20 C 1.47017 * 125.64838 * 179.72146 * 7 5 4 21 21 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 22 22 C 1.38233 * 120.00109 * 119.72297 * 21 2 1 23 23 C 1.38238 * 119.99749 * 179.78525 * 22 21 2 24 24 C 1.38234 * 120.00056 * 0.46903 * 23 22 21 25 25 C 1.38237 * 120.00048 * 359.76546 * 24 23 22 26 26 C 1.38234 * 119.99798 * 299.99639 * 21 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 1.08997 * 110.37259 * 322.93413 * 8 7 5 36 36 H 1.08997 * 110.36577 * 85.26420 * 8 7 5 37 37 H 1.09005 * 110.99936 * 81.06747 * 9 8 7 38 38 H 1.08995 * 111.00610 * 204.87792 * 9 8 7 39 39 H 0.96704 * 113.99979 * 298.54828 * 11 10 9 40 40 H 0.96994 * 119.99607 * 180.02562 * 15 14 12 41 41 H 1.09009 * 109.88166 * 298.38971 * 20 7 5 42 42 H 1.08994 * 109.88598 * 59.55098 * 20 7 5 43 43 H 1.08004 * 119.99934 * 0.02562 * 22 21 2 44 44 H 1.07999 * 119.99919 * 180.25459 * 23 22 21 45 45 H 1.08001 * 120.00294 * 179.78846 * 24 23 22 46 46 H 1.07991 * 120.00268 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.00005 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8408 0.9755 -2.3684 7 7 1.8629 -0.4716 -3.7038 8 6 2.6977 -1.6541 -3.9829 9 6 3.2724 -1.4083 -5.4003 10 6 2.0731 -0.7245 -6.1084 11 8 1.1472 -1.7004 -6.5906 12 6 2.5503 0.1568 -7.2339 13 1 2.3530 1.2183 -7.2094 14 6 3.2386 -0.3922 -8.2949 15 7 3.4784 -1.6851 -8.3250 16 14 3.8295 0.7000 -9.6904 17 1 3.4341 2.1057 -9.4203 18 1 5.3082 0.6127 -9.7953 19 1 3.2154 0.2499 -10.9654 20 6 1.4386 0.1183 -4.9819 21 6 2.0324 -0.7105 1.2305 22 6 2.8224 -1.8377 1.1036 23 6 3.2868 -2.4868 2.2323 24 6 2.9532 -2.0143 3.4878 25 6 2.1592 -0.8899 3.6147 26 6 1.6985 -0.2382 2.4860 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2493 35 1 3.5047 -1.7294 -3.2541 36 1 2.0898 -2.5588 -3.9718 37 1 4.1348 -0.7427 -5.3622 38 1 3.5291 -2.3495 -5.8865 39 1 1.5198 -2.3060 -7.2461 40 1 3.9630 -2.0711 -9.0713 41 1 0.3518 0.0887 -5.0613 42 1 1.7893 1.1481 -5.0495 43 1 3.0799 -2.2090 0.1226 44 1 3.9074 -3.3651 2.1332 45 1 3.3133 -2.5234 4.3696 46 1 1.8989 -0.5205 4.5955 47 1 1.0779 0.6401 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -65.210968 kcal Electronic energy + Delta-G solvation = -27097.663999 eV Core-core repulsion = 23437.916519 eV Total energy + Delta-G solvation = -3659.747480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42029 -39.17939 -37.58301 -35.58876 -34.32913 -32.24155 -31.24711 -30.18462 -29.80795 -28.63168 -27.61636 -27.08558 -24.97708 -23.18494 -22.59614 -22.07180 -20.05946 -19.34135 -18.40037 -17.51096 -17.13584 -16.23460 -15.56287 -15.23805 -15.05026 -14.98303 -14.73262 -14.40232 -14.14756 -13.86459 -13.66489 -13.40102 -13.19711 -12.92247 -12.66006 -12.33102 -12.11625 -11.95813 -11.69916 -11.64651 -11.48497 -11.38592 -11.36852 -11.08005 -10.93585 -10.89969 -10.76716 -10.60896 -10.51246 -10.47618 -10.13751 -9.42354 -9.10136 -9.02044 -8.76412 -8.69856 -8.25019 -7.99888 -6.31539 -4.38813 1.27540 1.29740 3.04526 3.17081 3.26335 3.30919 3.51325 3.69364 4.24841 4.54990 4.63720 4.87415 4.93753 4.97500 4.98823 5.02814 5.10811 5.32778 5.39184 5.47444 5.50919 5.62867 5.67911 5.75471 5.85322 5.87490 5.89733 5.90827 5.98908 6.04585 6.11858 6.14370 6.22508 6.33634 6.40706 6.42662 6.55532 6.55931 6.61620 6.70384 6.88415 6.90912 6.96305 7.26679 7.32392 7.70644 7.99761 8.11958 8.62529 8.66123 9.27493 9.36514 10.76014 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.002845 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.204100 B = 9839.952618 C =10240.737940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 C -0.149 4.149 4 C -0.129 4.129 5 C 0.523 3.477 6 O -0.547 6.547 7 N -0.608 5.608 8 C 0.094 3.906 9 C -0.134 4.134 10 C 0.246 3.754 11 O -0.586 6.586 12 C -0.533 4.533 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.902 3.098 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.123 3.877 21 C -0.062 4.062 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.114 4.114 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.382 0.618 40 H 0.267 0.733 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 -2.255 18.797 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.006 4.006 3 C -0.206 4.206 4 C -0.169 4.169 5 C 0.313 3.687 6 O -0.427 6.427 7 N -0.340 5.340 8 C -0.029 4.029 9 C -0.173 4.173 10 C 0.206 3.794 11 O -0.394 6.394 12 C -0.571 4.571 13 H 0.083 0.917 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.001 3.999 21 C -0.062 4.062 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.132 4.132 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.232 0.768 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.105 -1.536 19.222 19.284 hybrid contribution 0.966 -0.035 -1.109 1.471 sum 0.862 -1.571 18.114 18.202 Atomic orbital electron populations 1.22121 0.93055 1.01659 1.03748 1.19204 0.96454 0.95222 0.89698 1.22120 1.00193 0.94517 1.03757 1.21814 1.02220 1.00428 0.92451 1.20104 0.80605 0.84587 0.83450 1.90525 1.39243 1.27039 1.85869 1.48693 1.50221 1.29367 1.05723 1.22519 0.93205 0.87854 0.99321 1.23297 0.99812 1.02671 0.91538 1.19481 0.84369 0.85902 0.89655 1.86137 1.42107 1.48355 1.62851 1.21547 1.35768 0.94813 1.05021 0.91746 1.24990 0.94661 0.95312 0.98102 1.69704 1.41247 1.10601 1.31987 0.86367 0.78298 0.80784 0.81571 1.19588 1.20843 1.20759 1.22050 0.99246 0.97285 0.81292 1.19958 0.96599 0.95116 0.94574 1.21247 0.98278 0.95728 0.99038 1.21150 0.99929 0.99872 0.92622 1.21108 0.99301 0.97153 0.97368 1.21112 0.98271 0.96065 0.98357 1.20979 1.00269 1.00101 0.91877 0.89018 0.93064 0.93461 0.93079 0.93444 0.88990 0.89012 0.89046 0.92203 0.91950 0.91476 0.89381 0.76790 0.92281 0.92162 0.91039 0.85621 0.86211 0.86454 0.86351 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.99 37.16 0.30 -1.65 16 2 C -0.01 -0.07 0.60 -155.66 -0.09 -0.16 16 3 C -0.15 -1.95 7.99 37.15 0.30 -1.65 16 4 C -0.13 -1.72 2.43 -27.88 -0.07 -1.79 16 5 C 0.52 9.12 7.26 -10.98 -0.08 9.04 16 6 O -0.55 -10.69 11.67 5.56 0.06 -10.62 16 7 N -0.61 -11.50 3.33 -170.52 -0.57 -12.06 16 8 C 0.09 1.62 6.68 -2.53 -0.02 1.61 16 9 C -0.13 -2.81 5.47 -24.58 -0.13 -2.94 16 10 C 0.25 5.79 0.85 -89.94 -0.08 5.72 16 11 O -0.59 -14.39 13.07 -35.23 -0.46 -14.86 16 12 C -0.53 -13.72 8.22 -34.44 -0.28 -14.01 16 13 H 0.06 1.68 7.57 -52.49 -0.40 1.28 16 14 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 15 N -0.90 -22.57 10.67 55.43 0.59 -21.97 16 16 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.12 2.71 6.23 -3.06 -0.02 2.69 16 21 C -0.06 -0.72 4.76 -104.62 -0.50 -1.22 16 22 C -0.13 -1.35 8.98 -39.58 -0.36 -1.71 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 26 C -0.11 -1.21 8.71 -39.58 -0.34 -1.56 16 27 H 0.09 1.43 5.51 -51.93 -0.29 1.14 16 28 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.43 5.51 -51.93 -0.29 1.15 16 33 H 0.09 1.11 7.23 -51.93 -0.38 0.74 16 34 H 0.09 1.11 7.50 -51.93 -0.39 0.72 16 35 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 38 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 39 H 0.38 9.38 7.46 45.56 0.34 9.72 16 40 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 41 H 0.06 1.38 8.07 -51.92 -0.42 0.96 16 42 H 0.07 1.61 7.66 -51.93 -0.40 1.21 16 43 H 0.13 1.23 5.89 -52.48 -0.31 0.92 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.12 1.16 7.10 -52.49 -0.37 0.79 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -27.34 365.44 -9.08 -36.42 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -6.53 Total: 13.17 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.66 Total: -10.59 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.02 Total: -34.04 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.40 Total: -25.48 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.34 -9.08 -36.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.793 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds