Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 O 1.21279 * 119.99692 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00146 * 180.02562 * 5 4 2 8 8 C 1.47423 * 125.64537 * 0.02562 * 7 5 4 9 9 C 1.54915 * 104.83059 * 204.09196 * 8 7 5 10 10 C 1.55153 * 101.58374 * 322.99847 * 9 8 7 11 11 O 1.42904 * 110.71763 * 276.95811 * 10 9 8 12 12 C 1.50697 * 110.72190 * 153.86211 * 10 9 8 13 13 H 1.07995 * 120.00051 * 241.44672 * 12 10 9 14 14 C 1.37876 * 119.99924 * 61.45130 * 12 10 9 15 15 N 1.31524 * 120.00125 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00096 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47031 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47144 * 119.99901 * 16 14 12 19 19 H 1.48503 * 109.47291 * 240.00153 * 16 14 12 20 20 C 1.47017 * 125.64838 * 179.72146 * 7 5 4 21 21 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 22 22 C 1.38233 * 120.00109 * 119.72297 * 21 2 1 23 23 C 1.38238 * 119.99749 * 179.78525 * 22 21 2 24 24 C 1.38234 * 120.00056 * 0.46903 * 23 22 21 25 25 C 1.38237 * 120.00048 * 359.76546 * 24 23 22 26 26 C 1.38234 * 119.99798 * 299.99639 * 21 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 1.08997 * 110.37259 * 322.93413 * 8 7 5 36 36 H 1.08997 * 110.36577 * 85.26420 * 8 7 5 37 37 H 1.09005 * 110.99936 * 81.06747 * 9 8 7 38 38 H 1.08995 * 111.00610 * 204.87792 * 9 8 7 39 39 H 0.96704 * 113.99979 * 298.54828 * 11 10 9 40 40 H 0.96994 * 119.99607 * 180.02562 * 15 14 12 41 41 H 1.09009 * 109.88166 * 298.38971 * 20 7 5 42 42 H 1.08994 * 109.88598 * 59.55098 * 20 7 5 43 43 H 1.08004 * 119.99934 * 0.02562 * 22 21 2 44 44 H 1.07999 * 119.99919 * 180.25459 * 23 22 21 45 45 H 1.08001 * 120.00294 * 179.78846 * 24 23 22 46 46 H 1.07991 * 120.00268 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.00005 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8408 0.9755 -2.3684 7 7 1.8629 -0.4716 -3.7038 8 6 2.6977 -1.6541 -3.9829 9 6 3.2724 -1.4083 -5.4003 10 6 2.0731 -0.7245 -6.1084 11 8 1.1472 -1.7004 -6.5906 12 6 2.5503 0.1568 -7.2339 13 1 2.3530 1.2183 -7.2094 14 6 3.2386 -0.3922 -8.2949 15 7 3.4784 -1.6851 -8.3250 16 14 3.8295 0.7000 -9.6904 17 1 3.4341 2.1057 -9.4203 18 1 5.3082 0.6127 -9.7953 19 1 3.2154 0.2499 -10.9654 20 6 1.4386 0.1183 -4.9819 21 6 2.0324 -0.7105 1.2305 22 6 2.8224 -1.8377 1.1036 23 6 3.2868 -2.4868 2.2323 24 6 2.9532 -2.0143 3.4878 25 6 2.1592 -0.8899 3.6147 26 6 1.6985 -0.2382 2.4860 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2493 35 1 3.5047 -1.7294 -3.2541 36 1 2.0898 -2.5588 -3.9718 37 1 4.1348 -0.7427 -5.3622 38 1 3.5291 -2.3495 -5.8865 39 1 1.5198 -2.3060 -7.2461 40 1 3.9630 -2.0711 -9.0713 41 1 0.3518 0.0887 -5.0613 42 1 1.7893 1.1481 -5.0495 43 1 3.0799 -2.2090 0.1226 44 1 3.9074 -3.3651 2.1332 45 1 3.3133 -2.5234 4.3696 46 1 1.8989 -0.5205 4.5955 47 1 1.0779 0.6401 2.5851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = -80.048739 kcal Electronic energy + Delta-G solvation = -27098.307413 eV Core-core repulsion = 23437.916519 eV Total energy + Delta-G solvation = -3660.390894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58255 -40.33031 -39.07989 -36.70559 -36.00140 -34.20582 -32.10513 -31.56681 -30.76700 -30.13869 -28.99959 -28.13087 -26.73381 -24.24786 -23.72157 -23.06320 -21.64019 -20.64479 -19.66474 -19.15285 -18.44103 -17.34535 -17.02777 -16.89426 -16.44645 -16.10608 -15.78177 -15.74289 -15.49186 -15.04848 -14.85594 -14.50756 -14.34109 -14.16226 -13.97231 -13.73716 -13.38715 -13.24761 -13.19908 -13.13273 -12.86535 -12.73031 -12.66412 -12.43707 -12.32629 -12.27252 -12.24055 -11.97246 -11.87920 -11.62874 -11.42093 -11.24463 -10.67585 -10.45840 -10.12886 -9.73817 -9.57510 -9.49505 -8.24906 -6.38801 0.53272 0.57914 1.39379 1.44095 1.53697 1.67424 2.06968 2.39690 2.95820 3.00580 3.47850 3.66058 3.83400 3.98613 3.99563 4.05466 4.21309 4.22931 4.29619 4.33846 4.38097 4.44455 4.57429 4.60141 4.68474 4.70302 4.71844 4.75448 4.84331 4.93890 5.03444 5.07772 5.09610 5.18646 5.20915 5.24442 5.28702 5.44733 5.46644 5.51336 5.54398 5.69960 5.70599 5.76901 5.80538 6.09090 6.19899 6.62081 6.70392 7.23508 7.31401 7.40784 8.81068 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.002845 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.204100 B = 9839.952618 C =10240.737940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 C -0.145 4.145 4 C -0.120 4.120 5 C 0.519 3.481 6 O -0.571 6.571 7 N -0.613 5.613 8 C 0.103 3.897 9 C -0.125 4.125 10 C 0.234 3.766 11 O -0.593 6.593 12 C -0.561 4.561 13 H 0.049 0.951 14 C 0.038 3.962 15 N -0.904 5.904 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.279 1.279 20 C 0.131 3.869 21 C -0.075 4.075 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.126 4.126 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.379 0.621 40 H 0.271 0.729 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -3.507 20.835 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 C -0.202 4.202 4 C -0.159 4.159 5 C 0.310 3.690 6 O -0.452 6.452 7 N -0.346 5.346 8 C -0.019 4.019 9 C -0.164 4.164 10 C 0.194 3.806 11 O -0.402 6.402 12 C -0.599 4.599 13 H 0.067 0.933 14 C -0.164 4.164 15 N -0.543 5.543 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.200 1.200 19 H -0.204 1.204 20 C 0.008 3.992 21 C -0.075 4.075 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.229 0.771 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.152 0.848 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.156 0.844 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.195 -2.800 21.281 21.498 hybrid contribution 0.524 0.379 -1.699 1.818 sum 1.719 -2.421 19.581 19.805 Atomic orbital electron populations 1.22044 0.93783 1.01569 1.02828 1.19111 0.95859 0.94892 0.90206 1.22041 1.00352 0.94991 1.02835 1.21864 1.03244 1.00695 0.90125 1.20946 0.79869 0.84311 0.83893 1.90538 1.40199 1.28282 1.86214 1.48764 1.50869 1.29888 1.05105 1.22526 0.94047 0.87336 0.97967 1.23068 0.98323 1.01459 0.93563 1.19615 0.85384 0.85932 0.89688 1.86124 1.42760 1.48470 1.62826 1.21740 1.36946 0.94548 1.06714 0.93313 1.25565 0.94608 0.96522 0.99685 1.69753 1.40958 1.11169 1.32416 0.85524 0.78096 0.78958 0.79105 1.20213 1.20018 1.20425 1.21718 0.97878 0.96631 0.83000 1.19829 0.97810 0.95833 0.94055 1.21419 0.98354 0.95639 1.00003 1.21442 0.99874 1.00373 0.92475 1.21459 0.98612 0.96924 0.98171 1.21400 0.97914 0.96039 0.98928 1.21126 1.00641 1.00543 0.92062 0.91925 0.91916 0.93078 0.91947 0.93030 0.91888 0.87075 0.87213 0.88169 0.91007 0.92550 0.90258 0.77098 0.91917 0.94084 0.92552 0.84768 0.84288 0.84228 0.84376 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 7.99 71.98 0.58 -3.14 16 2 C 0.00 -0.01 0.60 -52.93 -0.03 -0.04 16 3 C -0.15 -3.70 7.99 71.98 0.57 -3.13 16 4 C -0.12 -2.94 2.43 29.85 0.07 -2.87 16 5 C 0.52 17.84 7.26 87.66 0.64 18.47 16 6 O -0.57 -22.87 11.67 -3.03 -0.04 -22.90 16 7 N -0.61 -22.99 3.33 -811.78 -2.70 -25.69 16 8 C 0.10 3.38 6.68 86.86 0.58 3.97 16 9 C -0.13 -5.20 5.47 31.99 0.17 -5.03 16 10 C 0.23 11.23 0.85 -10.35 -0.01 11.22 16 11 O -0.59 -29.70 13.07 -148.98 -1.95 -31.64 16 12 C -0.56 -29.62 8.22 25.60 0.21 -29.41 16 13 H 0.05 2.65 7.57 -2.91 -0.02 2.62 16 14 C 0.04 1.92 5.28 84.65 0.45 2.37 16 15 N -0.90 -45.44 10.67 21.45 0.23 -45.21 16 16 Si 0.96 41.21 29.54 68.60 2.03 43.24 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.13 5.95 6.23 86.73 0.54 6.49 16 21 C -0.08 -1.56 4.76 -19.86 -0.09 -1.66 16 22 C -0.14 -2.54 8.98 22.27 0.20 -2.34 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 25 C -0.12 -2.01 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.39 8.71 22.27 0.19 -2.20 16 27 H 0.06 1.99 5.51 -2.39 -0.01 1.97 16 28 H 0.06 1.41 7.39 -2.39 -0.02 1.39 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.40 7.39 -2.39 -0.02 1.38 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.99 5.51 -2.39 -0.01 1.98 16 33 H 0.11 2.34 7.23 -2.39 -0.02 2.32 16 34 H 0.11 2.34 7.50 -2.39 -0.02 2.32 16 35 H 0.10 2.51 7.48 -2.39 -0.02 2.49 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.42 8.04 -2.38 -0.02 2.40 16 38 H 0.08 3.41 7.54 -2.39 -0.02 3.39 16 39 H 0.38 18.94 7.46 -74.05 -0.55 18.39 16 40 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 41 H 0.04 1.97 8.07 -2.38 -0.02 1.95 16 42 H 0.06 2.67 7.66 -2.39 -0.02 2.66 16 43 H 0.13 2.16 5.89 -2.91 -0.02 2.14 16 44 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.14 1.59 8.06 -2.92 -0.02 1.56 16 47 H 0.12 2.16 7.10 -2.91 -0.02 2.14 16 Total: -1.00 -59.82 365.44 2.74 -57.09 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.42 Total: 37.75 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.74 Total: -12.63 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -2.47 Total: -70.91 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -1.98 Total: -54.54 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -59.82 2.74 -57.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.960 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds