Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46952 * 2 1 4 4 C 1.52998 * 109.46963 * 119.99888 * 2 1 3 5 5 H 1.09000 * 109.47299 * 300.35472 * 4 2 1 6 6 C 1.50701 * 109.47146 * 180.35095 * 4 2 1 7 7 O 1.21278 * 119.99819 * 324.13214 * 6 4 2 8 8 N 1.34780 * 119.99928 * 144.12079 * 6 4 2 9 9 C 1.47019 * 125.64908 * 4.56205 * 8 6 4 10 10 C 1.54316 * 107.27372 * 181.09243 * 9 8 6 11 11 C 1.55158 * 102.94227 * 22.18412 * 10 9 8 12 12 O 1.42903 * 110.99965 * 82.57818 * 11 10 9 13 13 C 1.50697 * 111.03979 * 206.41226 * 11 10 9 14 14 H 1.07997 * 120.00349 * 21.45359 * 13 11 10 15 15 C 1.37882 * 120.00354 * 201.45563 * 13 11 10 16 16 N 1.31508 * 120.00131 * 173.81677 * 15 13 11 17 17 Si 1.86807 * 119.99469 * 353.81054 * 15 13 11 18 18 H 1.48502 * 109.46843 * 84.95103 * 17 15 13 19 19 H 1.48498 * 109.46857 * 204.94391 * 17 15 13 20 20 H 1.48497 * 109.47493 * 324.94802 * 17 15 13 21 21 C 1.47425 * 125.64747 * 184.59547 * 8 6 4 22 22 C 1.50702 * 109.47079 * 60.35521 * 4 2 1 23 23 C 1.38231 * 120.00118 * 59.72706 * 22 4 2 24 24 C 1.38234 * 120.00219 * 179.76814 * 23 22 4 25 25 C 1.38239 * 119.99715 * 0.47918 * 24 23 22 26 26 C 1.38228 * 120.00118 * 359.79250 * 25 24 23 27 27 C 1.38236 * 119.99955 * 239.99464 * 22 4 2 28 28 H 1.09001 * 109.46737 * 299.99697 * 1 2 3 29 29 H 1.08998 * 109.47012 * 59.99823 * 1 2 3 30 30 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46848 * 239.99772 * 2 1 3 32 32 H 1.09002 * 109.47206 * 185.90963 * 3 2 1 33 33 H 1.09000 * 109.47709 * 305.90932 * 3 2 1 34 34 H 1.08996 * 109.47614 * 65.91477 * 3 2 1 35 35 H 1.09006 * 109.88087 * 300.50843 * 9 8 6 36 36 H 1.08997 * 109.88409 * 61.66573 * 9 8 6 37 37 H 1.09003 * 110.71750 * 263.83212 * 10 9 8 38 38 H 1.08993 * 110.72658 * 140.55677 * 10 9 8 39 39 H 0.96697 * 114.00040 * 62.52328 * 12 11 10 40 40 H 0.97006 * 119.99735 * 179.97438 * 16 15 13 41 41 H 1.09000 * 110.36570 * 36.99952 * 21 8 6 42 42 H 1.09004 * 110.45842 * 274.72790 * 21 8 6 43 43 H 1.08010 * 120.00023 * 359.97438 * 23 22 4 44 44 H 1.07998 * 120.00145 * 180.24958 * 24 23 22 45 45 H 1.08005 * 119.99612 * 179.76868 * 25 24 23 46 46 H 1.07997 * 120.00007 * 179.97438 * 26 25 24 47 47 H 1.07996 * 119.99946 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6715 -0.2111 2.1392 6 6 3.5470 -0.7137 1.2537 7 8 4.1569 -0.8160 0.2104 8 7 4.2169 -0.5932 2.4169 9 6 3.6099 -0.5564 3.7555 10 6 4.7561 -0.3812 4.7738 11 6 5.8911 0.2383 3.9162 12 8 5.7206 1.6509 3.7844 13 6 7.2445 -0.0880 4.4931 14 1 7.3602 -0.9343 5.1539 15 6 8.3353 0.6940 4.1772 16 7 9.4889 0.4851 4.7732 17 14 8.1746 2.0500 2.9025 18 1 7.6579 3.2813 3.5522 19 1 9.5051 2.3272 2.3042 20 1 7.2330 1.6196 1.8379 21 6 5.6797 -0.4756 2.5579 22 6 1.5449 -2.1446 1.2449 23 6 1.8815 -2.9903 0.2045 24 6 1.4313 -4.2972 0.2029 25 6 0.6362 -4.7557 1.2367 26 6 0.2949 -3.9084 2.2742 27 6 0.7495 -2.6028 2.2784 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1249 1.4443 -0.1058 33 1 1.5929 1.9860 -0.8323 34 1 1.7658 1.9249 0.9381 35 1 2.9193 0.2841 3.8264 36 1 3.0816 -1.4900 3.9487 37 1 5.0620 -1.3455 5.1796 38 1 4.4614 0.2988 5.5730 39 1 5.7633 2.1321 4.6221 40 1 10.2563 1.0350 4.5507 41 1 6.0920 0.1236 1.7461 42 1 6.1416 -1.4628 2.5722 43 1 2.4990 -2.6308 -0.6054 44 1 1.6976 -4.9591 -0.6079 45 1 0.2814 -5.7757 1.2335 46 1 -0.3266 -4.2664 3.0816 47 1 0.4826 -1.9408 3.0888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = -68.398631 kcal Electronic energy + Delta-G solvation = -27944.154949 eV Core-core repulsion = 24284.269242 eV Total energy + Delta-G solvation = -3659.885707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48059 -38.94975 -37.69485 -35.69058 -34.73484 -32.40121 -31.68415 -30.94576 -30.29102 -28.66147 -27.44820 -26.88981 -24.86287 -22.86275 -22.67540 -21.79892 -20.45471 -19.75310 -18.60771 -17.53529 -17.03490 -16.94838 -15.64415 -15.47340 -15.03665 -15.01789 -14.88657 -14.50180 -14.26165 -14.03193 -13.61334 -13.47569 -13.11264 -12.81201 -12.65601 -12.51871 -12.49718 -12.21874 -12.14749 -11.98493 -11.76242 -11.57791 -11.51366 -11.19332 -11.05790 -10.86916 -10.74799 -10.63167 -10.56704 -10.32046 -10.21397 -9.55370 -9.25743 -8.97392 -8.70833 -8.62640 -8.53035 -8.08237 -6.23758 -4.36635 1.24860 1.34732 2.98958 3.39820 3.44463 3.53751 3.68562 3.74071 4.45997 4.57990 4.65305 4.79454 4.88874 4.93640 4.99629 5.04369 5.08820 5.12878 5.24584 5.30242 5.34863 5.47041 5.51439 5.58547 5.61182 5.67538 5.72852 5.80518 5.85650 5.94008 5.99854 6.01471 6.09267 6.12006 6.30731 6.34887 6.39153 6.45905 6.50949 6.55784 6.56910 6.68954 6.73815 6.92798 6.99181 7.42349 8.02651 8.09068 8.56356 8.62398 8.78901 9.37883 10.85020 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.004198 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.318721 B = 6668.908119 C = 7320.471967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.151 4.151 4 C -0.061 4.061 5 H 0.093 0.907 6 C 0.536 3.464 7 O -0.547 6.547 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.147 4.147 11 C 0.219 3.781 12 O -0.562 6.562 13 C -0.554 4.554 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.885 5.885 17 Si 0.940 3.060 18 H -0.289 1.289 19 H -0.322 1.322 20 H -0.268 1.268 21 C 0.112 3.888 22 C -0.066 4.066 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.112 4.112 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.372 0.628 40 H 0.268 0.732 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.558 -4.356 -4.652 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C -0.208 4.208 4 C -0.082 4.082 5 H 0.111 0.889 6 C 0.323 3.677 7 O -0.425 6.425 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.186 4.186 11 C 0.179 3.821 12 O -0.369 6.369 13 C -0.591 4.591 14 H 0.100 0.900 15 C -0.128 4.128 16 N -0.520 5.520 17 Si 0.774 3.226 18 H -0.216 1.216 19 H -0.253 1.253 20 H -0.194 1.194 21 C -0.009 4.009 22 C -0.067 4.067 23 C -0.122 4.122 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.130 4.130 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.220 0.780 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.135 -4.546 -5.858 21.457 hybrid contribution 0.131 0.746 0.197 0.783 sum -20.004 -3.800 -5.661 21.134 Atomic orbital electron populations 1.21840 0.94711 1.01896 1.01682 1.20975 0.95466 0.96206 0.96680 1.21881 1.02188 0.95192 1.01571 1.20419 0.92733 0.93890 1.01202 0.88882 1.19905 0.88741 0.76349 0.82662 1.90650 1.69871 1.50844 1.31153 1.48685 1.09156 1.70800 1.05434 1.22025 0.96885 1.00050 0.82974 1.23238 0.95557 1.02564 0.97200 1.20210 0.93571 0.78025 0.90339 1.86152 1.93921 1.20783 1.36063 1.21172 0.90460 1.16333 1.31170 0.89997 1.25124 0.94721 0.97564 0.95421 1.69951 1.01435 1.39734 1.40847 0.85884 0.74032 0.81010 0.81663 1.21614 1.25289 1.19367 1.22938 0.77837 1.00528 0.99598 1.19430 0.97868 0.94157 0.95228 1.21180 0.98948 0.93518 0.98520 1.21145 0.98091 0.95703 0.98795 1.21142 0.98748 0.99592 0.94679 1.21081 1.00437 0.93780 0.98613 1.21045 0.98007 0.96074 0.97918 0.92730 0.92511 0.92432 0.89917 0.91879 0.92438 0.92803 0.92211 0.92384 0.90237 0.90703 0.78028 0.92295 0.90463 0.90391 0.85387 0.86125 0.86286 0.86107 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.95 37.16 0.33 -1.10 16 2 C -0.07 -0.94 2.02 -90.62 -0.18 -1.12 16 3 C -0.15 -1.98 8.81 37.15 0.33 -1.65 16 4 C -0.06 -0.84 1.62 -92.92 -0.15 -0.99 16 5 H 0.09 1.15 6.61 -51.93 -0.34 0.81 16 6 C 0.54 9.72 5.54 -10.98 -0.06 9.66 16 7 O -0.55 -11.64 15.48 5.56 0.09 -11.55 16 8 N -0.61 -11.44 3.33 -170.53 -0.57 -12.01 16 9 C 0.10 1.61 6.18 -3.07 -0.02 1.60 16 10 C -0.15 -2.56 6.14 -24.90 -0.15 -2.71 16 11 C 0.22 4.76 0.69 -89.63 -0.06 4.69 16 12 O -0.56 -11.99 8.92 -35.23 -0.31 -12.30 16 13 C -0.55 -14.45 8.86 -34.44 -0.31 -14.75 16 14 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 15 C 0.08 2.14 5.46 -17.82 -0.10 2.04 16 16 N -0.88 -26.01 13.96 55.43 0.77 -25.24 16 17 Si 0.94 23.54 24.80 -169.99 -4.22 19.33 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.32 -8.29 7.11 56.52 0.40 -7.89 16 20 H -0.27 -6.87 5.28 56.52 0.30 -6.57 16 21 C 0.11 2.49 5.77 -2.53 -0.01 2.48 16 22 C -0.07 -0.85 3.52 -104.62 -0.37 -1.22 16 23 C -0.10 -1.37 8.79 -39.59 -0.35 -1.72 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.11 -1.24 9.67 -39.58 -0.38 -1.62 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 7.23 -51.93 -0.38 0.20 16 31 H 0.08 1.14 7.09 -51.93 -0.37 0.78 16 32 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.83 7.64 -51.93 -0.40 0.43 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.40 7.98 -51.93 -0.41 0.98 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.37 6.86 8.99 45.56 0.41 7.27 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.91 6.15 -51.93 -0.32 1.60 16 42 H 0.08 1.77 8.03 -51.93 -0.42 1.35 16 43 H 0.13 1.83 7.05 -52.48 -0.37 1.46 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.12 7.95 -52.49 -0.42 0.70 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -31.81 369.22 -8.19 -40.00 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.84 Total: 7.64 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.68 Total: -11.43 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.21 Total: -37.24 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.23 Total: -23.86 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.22 Total: 19.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.81 -8.19 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.398 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds