Wall clock time and date at job start Tue Mar 31 2020 12:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46952 * 2 1 4 4 C 1.52998 * 109.46963 * 119.99888 * 2 1 3 5 5 H 1.09000 * 109.47299 * 300.35472 * 4 2 1 6 6 C 1.50701 * 109.47146 * 180.35095 * 4 2 1 7 7 O 1.21278 * 119.99819 * 324.13214 * 6 4 2 8 8 N 1.34780 * 119.99928 * 144.12079 * 6 4 2 9 9 C 1.47019 * 125.64908 * 4.56205 * 8 6 4 10 10 C 1.54316 * 107.27372 * 181.09243 * 9 8 6 11 11 C 1.55158 * 102.94227 * 22.18412 * 10 9 8 12 12 O 1.42903 * 110.99965 * 82.57818 * 11 10 9 13 13 C 1.50697 * 111.03979 * 206.41226 * 11 10 9 14 14 H 1.07997 * 120.00349 * 21.45359 * 13 11 10 15 15 C 1.37882 * 120.00354 * 201.45563 * 13 11 10 16 16 N 1.31508 * 120.00131 * 173.81677 * 15 13 11 17 17 Si 1.86807 * 119.99469 * 353.81054 * 15 13 11 18 18 H 1.48502 * 109.46843 * 84.95103 * 17 15 13 19 19 H 1.48498 * 109.46857 * 204.94391 * 17 15 13 20 20 H 1.48497 * 109.47493 * 324.94802 * 17 15 13 21 21 C 1.47425 * 125.64747 * 184.59547 * 8 6 4 22 22 C 1.50702 * 109.47079 * 60.35521 * 4 2 1 23 23 C 1.38231 * 120.00118 * 59.72706 * 22 4 2 24 24 C 1.38234 * 120.00219 * 179.76814 * 23 22 4 25 25 C 1.38239 * 119.99715 * 0.47918 * 24 23 22 26 26 C 1.38228 * 120.00118 * 359.79250 * 25 24 23 27 27 C 1.38236 * 119.99955 * 239.99464 * 22 4 2 28 28 H 1.09001 * 109.46737 * 299.99697 * 1 2 3 29 29 H 1.08998 * 109.47012 * 59.99823 * 1 2 3 30 30 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46848 * 239.99772 * 2 1 3 32 32 H 1.09002 * 109.47206 * 185.90963 * 3 2 1 33 33 H 1.09000 * 109.47709 * 305.90932 * 3 2 1 34 34 H 1.08996 * 109.47614 * 65.91477 * 3 2 1 35 35 H 1.09006 * 109.88087 * 300.50843 * 9 8 6 36 36 H 1.08997 * 109.88409 * 61.66573 * 9 8 6 37 37 H 1.09003 * 110.71750 * 263.83212 * 10 9 8 38 38 H 1.08993 * 110.72658 * 140.55677 * 10 9 8 39 39 H 0.96697 * 114.00040 * 62.52328 * 12 11 10 40 40 H 0.97006 * 119.99735 * 179.97438 * 16 15 13 41 41 H 1.09000 * 110.36570 * 36.99952 * 21 8 6 42 42 H 1.09004 * 110.45842 * 274.72790 * 21 8 6 43 43 H 1.08010 * 120.00023 * 359.97438 * 23 22 4 44 44 H 1.07998 * 120.00145 * 180.24958 * 24 23 22 45 45 H 1.08005 * 119.99612 * 179.76868 * 25 24 23 46 46 H 1.07997 * 120.00007 * 179.97438 * 26 25 24 47 47 H 1.07996 * 119.99946 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6715 -0.2111 2.1392 6 6 3.5470 -0.7137 1.2537 7 8 4.1569 -0.8160 0.2104 8 7 4.2169 -0.5932 2.4169 9 6 3.6099 -0.5564 3.7555 10 6 4.7561 -0.3812 4.7738 11 6 5.8911 0.2383 3.9162 12 8 5.7206 1.6509 3.7844 13 6 7.2445 -0.0880 4.4931 14 1 7.3602 -0.9343 5.1539 15 6 8.3353 0.6940 4.1772 16 7 9.4889 0.4851 4.7732 17 14 8.1746 2.0500 2.9025 18 1 7.6579 3.2813 3.5522 19 1 9.5051 2.3272 2.3042 20 1 7.2330 1.6196 1.8379 21 6 5.6797 -0.4756 2.5579 22 6 1.5449 -2.1446 1.2449 23 6 1.8815 -2.9903 0.2045 24 6 1.4313 -4.2972 0.2029 25 6 0.6362 -4.7557 1.2367 26 6 0.2949 -3.9084 2.2742 27 6 0.7495 -2.6028 2.2784 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1249 1.4443 -0.1058 33 1 1.5929 1.9860 -0.8323 34 1 1.7658 1.9249 0.9381 35 1 2.9193 0.2841 3.8264 36 1 3.0816 -1.4900 3.9487 37 1 5.0620 -1.3455 5.1796 38 1 4.4614 0.2988 5.5730 39 1 5.7633 2.1321 4.6221 40 1 10.2563 1.0350 4.5507 41 1 6.0920 0.1236 1.7461 42 1 6.1416 -1.4628 2.5722 43 1 2.4990 -2.6308 -0.6054 44 1 1.6976 -4.9591 -0.6079 45 1 0.2814 -5.7757 1.2335 46 1 -0.3266 -4.2664 3.0816 47 1 0.4826 -1.9408 3.0888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:53 Heat of formation + Delta-G solvation = -89.269201 kcal Electronic energy + Delta-G solvation = -27945.059965 eV Core-core repulsion = 24284.269242 eV Total energy + Delta-G solvation = -3660.790723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71263 -40.16280 -39.10080 -36.79728 -36.34544 -34.49935 -32.67568 -31.78380 -31.75508 -30.21514 -28.61875 -27.88768 -26.62687 -24.23414 -23.59785 -22.68516 -21.77036 -21.30714 -19.88063 -19.44885 -18.33482 -17.92900 -17.28639 -16.74843 -16.55668 -16.30614 -16.18813 -15.71405 -15.51836 -15.23597 -14.97295 -14.59836 -14.43221 -14.18246 -14.16029 -13.77306 -13.65217 -13.50233 -13.37649 -13.26376 -13.18435 -13.00898 -12.57361 -12.46512 -12.35682 -12.17611 -12.10672 -11.98726 -11.95062 -11.67851 -11.56329 -11.28356 -10.91593 -10.69736 -10.35777 -9.80450 -9.60869 -9.58196 -8.40876 -6.52950 0.39108 0.51577 1.39365 1.45787 1.61300 1.65081 2.03619 2.36042 2.87031 2.92845 3.37415 3.59788 3.62426 3.78499 3.81786 4.00708 4.12884 4.17717 4.23729 4.24703 4.31344 4.37392 4.44254 4.48912 4.61904 4.65325 4.67370 4.74951 4.78284 4.83993 4.92676 4.96009 4.98229 5.09438 5.15611 5.18129 5.20537 5.23190 5.30881 5.35177 5.41856 5.51749 5.58196 5.64106 5.69674 6.02728 6.11865 6.55423 6.62216 6.99306 7.14905 7.27375 8.72001 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.004198 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.318721 B = 6668.908119 C = 7320.471967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.048 4.048 5 H 0.117 0.883 6 C 0.529 3.471 7 O -0.590 6.590 8 N -0.614 5.614 9 C 0.105 3.895 10 C -0.137 4.137 11 C 0.217 3.783 12 O -0.565 6.565 13 C -0.546 4.546 14 H 0.055 0.945 15 C 0.035 3.965 16 N -0.929 5.929 17 Si 0.991 3.009 18 H -0.268 1.268 19 H -0.335 1.335 20 H -0.282 1.282 21 C 0.116 3.884 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.112 4.112 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.386 0.614 40 H 0.268 0.732 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.130 0.870 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.842 -4.322 -3.180 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.069 4.069 5 H 0.135 0.865 6 C 0.319 3.681 7 O -0.471 6.471 8 N -0.346 5.346 9 C -0.017 4.017 10 C -0.175 4.175 11 C 0.176 3.824 12 O -0.375 6.375 13 C -0.584 4.584 14 H 0.073 0.927 15 C -0.166 4.166 16 N -0.567 5.567 17 Si 0.826 3.174 18 H -0.194 1.194 19 H -0.267 1.267 20 H -0.209 1.209 21 C -0.008 4.008 22 C -0.081 4.081 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.236 0.764 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.119 0.881 44 H 0.148 0.852 45 H 0.163 0.837 46 H 0.169 0.831 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.462 -4.500 -4.353 25.251 hybrid contribution 1.461 0.616 -0.291 1.612 sum -23.001 -3.885 -4.644 23.785 Atomic orbital electron populations 1.21754 0.91966 1.02330 1.03035 1.20971 0.97547 0.95297 0.95442 1.21858 0.99565 0.96085 1.03017 1.20402 0.88660 0.95287 1.02533 0.86540 1.20851 0.90744 0.74857 0.81645 1.90624 1.71248 1.52462 1.32798 1.48773 1.07568 1.70972 1.07245 1.22243 0.96380 1.02831 0.80204 1.23141 0.94148 1.02521 0.97726 1.20035 0.93050 0.78592 0.90704 1.86098 1.93586 1.20435 1.37348 1.21465 0.92624 1.14666 1.29602 0.92728 1.25711 0.94630 0.99570 0.96687 1.70046 1.02304 1.41430 1.42914 0.85041 0.72876 0.79947 0.79562 1.19448 1.26677 1.20932 1.22530 0.80569 0.99004 0.98652 1.19398 0.99224 0.93404 0.96084 1.21129 0.99926 0.94871 0.98635 1.21343 0.98460 0.95120 0.99901 1.21500 0.97656 1.00940 0.93973 1.21487 0.99893 0.93259 0.99033 1.21333 0.97050 0.96957 0.97603 0.90995 0.91525 0.92419 0.92281 0.95916 0.90774 0.91446 0.89163 0.89596 0.90661 0.87815 0.76370 0.92321 0.94005 0.92187 0.88120 0.85177 0.83742 0.83081 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.95 71.98 0.64 -1.64 16 2 C -0.07 -1.78 2.02 -10.79 -0.02 -1.80 16 3 C -0.15 -3.75 8.81 71.98 0.63 -3.12 16 4 C -0.05 -1.22 1.62 -12.29 -0.02 -1.24 16 5 H 0.12 2.39 6.61 -2.39 -0.02 2.38 16 6 C 0.53 19.23 5.54 87.66 0.49 19.71 16 7 O -0.59 -26.52 15.48 -3.02 -0.05 -26.56 16 8 N -0.61 -22.58 3.33 -811.82 -2.70 -25.28 16 9 C 0.10 2.88 6.18 86.73 0.54 3.42 16 10 C -0.14 -4.39 6.14 31.78 0.20 -4.19 16 11 C 0.22 9.28 0.69 -10.15 -0.01 9.27 16 12 O -0.57 -23.20 8.92 -148.98 -1.33 -24.53 16 13 C -0.55 -28.88 8.86 25.60 0.23 -28.66 16 14 H 0.05 3.15 7.98 -2.91 -0.02 3.12 16 15 C 0.04 1.97 5.46 84.66 0.46 2.43 16 16 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 17 Si 0.99 49.64 24.80 68.60 1.70 51.34 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.33 -17.31 7.11 99.48 0.71 -16.61 16 20 H -0.28 -14.77 5.28 99.48 0.53 -14.25 16 21 C 0.12 5.24 5.77 86.85 0.50 5.75 16 22 C -0.08 -1.90 3.52 -19.87 -0.07 -1.97 16 23 C -0.13 -3.35 8.79 22.27 0.20 -3.16 16 24 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 25 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 26 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 27 C -0.11 -1.99 9.67 22.27 0.22 -1.77 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.00 7.23 -2.39 -0.02 0.98 16 31 H 0.06 1.70 7.09 -2.39 -0.02 1.68 16 32 H 0.02 0.74 7.02 -2.39 -0.02 0.72 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.99 7.64 -2.38 -0.02 1.98 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.48 7.98 -2.39 -0.02 2.46 16 38 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.39 13.24 8.99 -74.06 -0.67 12.58 16 40 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 41 H 0.04 2.17 6.15 -2.39 -0.01 2.15 16 42 H 0.06 2.86 8.03 -2.38 -0.02 2.84 16 43 H 0.10 3.12 7.05 -2.91 -0.02 3.10 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.15 1.83 7.95 -2.91 -0.02 1.81 16 Total: -1.00 -73.61 369.22 2.69 -70.92 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.11 Total: 22.98 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.65 Total: -13.06 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.40 Total: -81.09 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -1.38 Total: -51.10 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.70 Total: 51.34 kcal Total: -73.61 2.69 -70.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.345 kcal (2) G-P(sol) polarization free energy of solvation -73.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds