Wall clock time and date at job start Tue Mar 31 2020 11:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.53006 * 109.46957 * 119.99686 * 2 1 3 5 5 C 1.52998 * 109.47229 * 65.67821 * 4 2 1 6 6 H 1.09002 * 109.47434 * 302.14743 * 5 4 2 7 7 C 1.50691 * 109.47222 * 182.14385 * 5 4 2 8 8 O 1.20828 * 120.00178 * 240.00049 * 7 5 4 9 9 O 1.34224 * 120.00428 * 59.99964 * 7 5 4 10 10 N 1.46907 * 109.46817 * 62.14101 * 5 4 2 11 11 C 1.47180 * 110.99531 * 179.97438 * 10 5 4 12 12 C 1.52902 * 108.43772 * 165.49317 * 11 10 5 13 13 C 1.50681 * 109.97330 * 50.27179 * 12 11 10 14 14 C 1.41130 * 118.48475 * 163.21348 * 13 12 11 15 15 C 1.41389 * 120.08510 * 359.70424 * 14 13 12 16 16 H 1.08001 * 119.99694 * 29.19995 * 15 14 13 17 17 C 1.39941 * 120.00123 * 209.20164 * 15 14 13 18 18 N 1.30824 * 120.00114 * 10.21034 * 17 15 14 19 19 Si 1.86800 * 119.99817 * 190.20884 * 17 15 14 20 20 H 1.48498 * 109.47496 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47218 * 120.00156 * 19 17 15 22 22 H 1.48506 * 109.47141 * 239.99888 * 19 17 15 23 23 C 1.40536 * 119.83551 * 179.68199 * 14 13 12 24 24 C 1.37643 * 119.53776 * 0.09074 * 23 14 13 25 25 C 1.38390 * 120.14517 * 0.07213 * 24 23 14 26 26 C 1.37207 * 121.81894 * 343.17315 * 13 12 11 27 27 C 1.46611 * 110.99829 * 57.03412 * 10 5 4 28 28 H 1.08996 * 109.46892 * 300.00227 * 1 2 3 29 29 H 1.09004 * 109.47117 * 60.00306 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47412 * 239.99857 * 2 1 3 32 32 H 1.08992 * 109.47088 * 64.90265 * 3 2 1 33 33 H 1.09003 * 109.47052 * 184.90659 * 3 2 1 34 34 H 1.09000 * 109.47140 * 304.90217 * 3 2 1 35 35 H 1.08994 * 109.46652 * 305.67842 * 4 2 1 36 36 H 1.09003 * 109.46866 * 185.67655 * 4 2 1 37 37 H 0.96696 * 117.00834 * 180.02562 * 9 7 5 38 38 H 1.08994 * 109.64175 * 45.80989 * 11 10 5 39 39 H 1.08998 * 109.81750 * 285.28476 * 11 10 5 40 40 H 1.08997 * 109.38520 * 170.42062 * 12 11 10 41 41 H 1.08993 * 109.38717 * 290.11374 * 12 11 10 42 42 H 0.96998 * 119.99682 * 179.97438 * 18 17 15 43 43 H 1.07997 * 120.22761 * 180.11658 * 23 14 13 44 44 H 1.07998 * 119.92531 * 180.08976 * 24 23 14 45 45 H 1.07998 * 119.53729 * 179.97438 * 25 24 23 46 46 H 1.09006 * 109.26397 * 296.15350 * 27 10 5 47 47 H 1.09000 * 109.26444 * 55.63963 * 27 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6499 -2.1990 1.1801 6 1 0.5671 -2.2851 1.0894 7 6 2.1060 -2.8983 2.4346 8 8 2.8845 -3.8196 2.3637 9 8 1.6477 -2.4976 3.6309 10 7 2.2899 -2.8202 0.0128 11 6 1.9369 -4.2456 -0.0858 12 6 2.3170 -4.7425 -1.4810 13 6 3.7384 -4.3542 -1.7961 14 6 4.3959 -5.0109 -2.8583 15 6 3.7244 -6.0127 -3.5963 16 1 2.6506 -5.9746 -3.7054 17 6 4.4511 -7.0535 -4.1853 18 7 5.7157 -7.2158 -3.8923 19 14 3.6154 -8.2112 -5.3898 20 1 2.1930 -7.8161 -5.5503 21 1 4.3009 -8.1363 -6.7051 22 1 3.6882 -9.6012 -4.8721 23 6 5.7195 -4.6663 -3.1811 24 6 6.3631 -3.6904 -2.4544 25 6 5.7101 -3.0552 -1.4126 26 6 4.3994 -3.3870 -1.0819 27 6 3.7464 -2.6615 0.0658 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.7502 1.9303 0.9306 33 1 3.1265 1.4438 -0.0879 34 1 1.6067 1.9811 -0.8428 35 1 1.5960 -0.2694 2.1363 36 1 3.1253 -0.6340 1.3016 37 1 1.9690 -2.9764 4.4070 38 1 0.8649 -4.3690 0.0676 39 1 2.4826 -4.8144 0.6670 40 1 2.2221 -5.8278 -1.5169 41 1 1.6485 -4.2978 -2.2181 42 1 6.2193 -7.9375 -4.3002 43 1 6.2280 -5.1634 -3.9939 44 1 7.3798 -3.4196 -2.6980 45 1 6.2245 -2.2913 -0.8487 46 1 3.9950 -1.6017 0.0088 47 1 4.1185 -3.0679 1.0062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600707413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:21 Heat of formation + Delta-G solvation = -80.008213 kcal Electronic energy + Delta-G solvation = -27781.789738 eV Core-core repulsion = 24121.400601 eV Total energy + Delta-G solvation = -3660.389137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91547 -38.66987 -37.23190 -36.28802 -35.16065 -33.57308 -32.13296 -30.65197 -29.05427 -28.02331 -27.14875 -25.25969 -25.05540 -23.50070 -22.28502 -20.79239 -20.41920 -19.72618 -18.58405 -18.03980 -17.07258 -16.54793 -15.95614 -15.50633 -15.16989 -14.83167 -14.62091 -14.34386 -14.02109 -13.80637 -13.37589 -13.21884 -13.03657 -12.67731 -12.32612 -12.27476 -12.25651 -11.97355 -11.82334 -11.49669 -11.45060 -11.26400 -11.13840 -11.10415 -10.97520 -10.82888 -10.69179 -10.54297 -10.44793 -10.42177 -10.30779 -9.97927 -9.38030 -9.14278 -9.12631 -8.07214 -7.16748 -7.06124 -6.62220 -4.29659 2.16918 2.83055 3.03237 3.05303 3.11656 3.16576 3.25372 3.99441 4.06071 4.65611 4.71292 4.88061 4.92613 5.13494 5.28894 5.33752 5.46994 5.61819 5.63854 5.69510 5.76187 5.81583 5.84667 5.89509 5.97043 6.04399 6.14442 6.16558 6.20743 6.26723 6.35554 6.41984 6.47142 6.56266 6.56797 6.74609 6.89893 6.96444 7.14725 7.16871 7.28030 7.42550 7.52413 7.73216 7.89936 7.99800 8.14041 8.16917 8.37734 8.72149 8.98280 9.06166 10.31295 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.003823 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.326054 B = 7322.638379 C = 7514.077254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.104 4.104 5 C 0.091 3.909 6 H 0.120 0.880 7 C 0.442 3.558 8 O -0.502 6.502 9 O -0.523 6.523 10 N -0.489 5.489 11 C 0.038 3.962 12 C -0.045 4.045 13 C -0.166 4.166 14 C 0.110 3.890 15 C -0.460 4.460 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.804 5.804 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.160 4.160 24 C -0.109 4.109 25 C -0.232 4.232 26 C -0.057 4.057 27 C 0.086 3.914 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.277 0.723 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 10.715 9.607 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.021 4.021 6 H 0.137 0.863 7 C 0.282 3.718 8 O -0.389 6.389 9 O -0.333 6.333 10 N -0.212 5.212 11 C -0.089 4.089 12 C -0.082 4.082 13 C -0.167 4.167 14 C 0.107 3.893 15 C -0.490 4.490 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.431 5.431 19 Si 0.732 3.268 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.202 1.202 23 C -0.179 4.179 24 C -0.127 4.127 25 C -0.252 4.252 26 C -0.057 4.057 27 C -0.041 4.041 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.259 0.741 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.576 10.745 8.754 16.299 hybrid contribution 0.416 -1.451 0.781 1.700 sum -8.159 9.294 9.536 15.617 Atomic orbital electron populations 1.21858 0.95463 1.01744 1.01213 1.21047 0.95668 0.95486 0.98864 1.21836 1.01075 0.96152 1.01319 1.21708 1.01926 0.91098 0.99401 1.21993 1.01796 0.95413 0.82851 0.86254 1.25702 0.78190 0.82098 0.85816 1.90728 1.32746 1.28633 1.86774 1.84611 1.68999 1.62183 1.17549 1.62914 1.10177 1.16048 1.32047 1.22512 0.99278 0.87188 0.99905 1.20095 0.94665 0.99967 0.93461 1.19338 0.95972 1.02214 0.99212 1.17545 0.91885 0.90441 0.89388 1.19561 0.95027 1.06389 1.28059 0.90436 1.25864 0.94672 0.98152 0.95556 1.69815 1.08616 1.28438 1.36189 0.86288 0.80552 0.79693 0.80303 1.18504 1.19930 1.20150 1.21303 0.96716 0.98283 1.01623 1.20580 0.97634 0.97668 0.96836 1.20183 0.95355 1.06072 1.03541 1.18842 0.93996 0.96903 0.95996 1.21159 0.85509 0.99456 0.97947 0.93231 0.92809 0.92430 0.88859 0.93158 0.92753 0.92673 0.90611 0.91141 0.74063 0.92160 0.91875 0.91164 0.92409 0.91232 0.86366 0.89585 0.89869 0.90926 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.96 37.16 0.33 -1.04 16 2 C -0.09 -0.99 2.85 -90.61 -0.26 -1.25 16 3 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 4 C -0.10 -1.14 3.72 -26.73 -0.10 -1.24 16 5 C 0.09 1.16 2.14 -68.87 -0.15 1.01 16 6 H 0.12 1.34 6.45 -51.93 -0.33 1.01 16 7 C 0.44 5.98 6.98 36.00 0.25 6.23 16 8 O -0.50 -8.68 12.40 -18.75 -0.23 -8.91 16 9 O -0.52 -5.33 13.29 -39.24 -0.52 -5.86 16 10 N -0.49 -7.98 3.95 -229.57 -0.91 -8.88 16 11 C 0.04 0.68 4.91 -3.72 -0.02 0.67 16 12 C -0.04 -0.93 4.95 -27.94 -0.14 -1.07 16 13 C -0.17 -4.03 5.83 -103.91 -0.61 -4.63 16 14 C 0.11 2.93 5.56 -106.74 -0.59 2.34 16 15 C -0.46 -12.13 8.05 -37.75 -0.30 -12.43 16 16 H 0.08 1.96 7.11 -52.49 -0.37 1.59 16 17 C 0.07 1.86 5.26 -17.34 -0.09 1.77 16 18 N -0.80 -21.21 10.84 55.55 0.60 -20.61 16 19 Si 0.91 18.99 29.57 -169.99 -5.03 13.97 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 23 C -0.16 -4.24 8.65 -38.93 -0.34 -4.58 16 24 C -0.11 -2.63 10.02 -39.74 -0.40 -3.03 16 25 C -0.23 -5.33 9.65 -39.17 -0.38 -5.71 16 26 C -0.06 -1.30 5.79 -104.66 -0.61 -1.90 16 27 C 0.09 1.60 4.41 -5.15 -0.02 1.58 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 31 H 0.09 1.25 7.50 -51.93 -0.39 0.86 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 37 H 0.40 2.60 9.10 45.56 0.41 3.02 16 38 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 39 H 0.06 1.26 5.82 -51.93 -0.30 0.96 16 40 H 0.07 1.52 7.40 -51.93 -0.38 1.14 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 43 H 0.12 3.25 6.23 -52.49 -0.33 2.92 16 44 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.07 1.23 6.40 -51.93 -0.33 0.90 16 47 H 0.06 1.14 5.51 -51.93 -0.29 0.86 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -29.84 361.99 -10.03 -39.88 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.33 Total: 9.30 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -3.07 Total: -24.34 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: -0.30 Total: -29.49 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.75 Total: -14.77 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.84 -10.03 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600707413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.132 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds