Wall clock time and date at job start Tue Mar 31 2020 11:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47047 * 2 1 4 4 C 1.53006 * 109.46957 * 119.99686 * 2 1 3 5 5 C 1.52998 * 109.47229 * 65.67821 * 4 2 1 6 6 H 1.09002 * 109.47434 * 302.14743 * 5 4 2 7 7 C 1.50691 * 109.47222 * 182.14385 * 5 4 2 8 8 O 1.20828 * 120.00178 * 240.00049 * 7 5 4 9 9 O 1.34224 * 120.00428 * 59.99964 * 7 5 4 10 10 N 1.46907 * 109.46817 * 62.14101 * 5 4 2 11 11 C 1.47180 * 110.99531 * 179.97438 * 10 5 4 12 12 C 1.52902 * 108.43772 * 165.49317 * 11 10 5 13 13 C 1.50681 * 109.97330 * 50.27179 * 12 11 10 14 14 C 1.41130 * 118.48475 * 163.21348 * 13 12 11 15 15 C 1.41389 * 120.08510 * 359.70424 * 14 13 12 16 16 H 1.08001 * 119.99694 * 29.19995 * 15 14 13 17 17 C 1.39941 * 120.00123 * 209.20164 * 15 14 13 18 18 N 1.30824 * 120.00114 * 10.21034 * 17 15 14 19 19 Si 1.86800 * 119.99817 * 190.20884 * 17 15 14 20 20 H 1.48498 * 109.47496 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47218 * 120.00156 * 19 17 15 22 22 H 1.48506 * 109.47141 * 239.99888 * 19 17 15 23 23 C 1.40536 * 119.83551 * 179.68199 * 14 13 12 24 24 C 1.37643 * 119.53776 * 0.09074 * 23 14 13 25 25 C 1.38390 * 120.14517 * 0.07213 * 24 23 14 26 26 C 1.37207 * 121.81894 * 343.17315 * 13 12 11 27 27 C 1.46611 * 110.99829 * 57.03412 * 10 5 4 28 28 H 1.08996 * 109.46892 * 300.00227 * 1 2 3 29 29 H 1.09004 * 109.47117 * 60.00306 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47412 * 239.99857 * 2 1 3 32 32 H 1.08992 * 109.47088 * 64.90265 * 3 2 1 33 33 H 1.09003 * 109.47052 * 184.90659 * 3 2 1 34 34 H 1.09000 * 109.47140 * 304.90217 * 3 2 1 35 35 H 1.08994 * 109.46652 * 305.67842 * 4 2 1 36 36 H 1.09003 * 109.46866 * 185.67655 * 4 2 1 37 37 H 0.96696 * 117.00834 * 180.02562 * 9 7 5 38 38 H 1.08994 * 109.64175 * 45.80989 * 11 10 5 39 39 H 1.08998 * 109.81750 * 285.28476 * 11 10 5 40 40 H 1.08997 * 109.38520 * 170.42062 * 12 11 10 41 41 H 1.08993 * 109.38717 * 290.11374 * 12 11 10 42 42 H 0.96998 * 119.99682 * 179.97438 * 18 17 15 43 43 H 1.07997 * 120.22761 * 180.11658 * 23 14 13 44 44 H 1.07998 * 119.92531 * 180.08976 * 24 23 14 45 45 H 1.07998 * 119.53729 * 179.97438 * 25 24 23 46 46 H 1.09006 * 109.26397 * 296.15350 * 27 10 5 47 47 H 1.09000 * 109.26444 * 55.63963 * 27 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6499 -2.1990 1.1801 6 1 0.5671 -2.2851 1.0894 7 6 2.1060 -2.8983 2.4346 8 8 2.8845 -3.8196 2.3637 9 8 1.6477 -2.4976 3.6309 10 7 2.2899 -2.8202 0.0128 11 6 1.9369 -4.2456 -0.0858 12 6 2.3170 -4.7425 -1.4810 13 6 3.7384 -4.3542 -1.7961 14 6 4.3959 -5.0109 -2.8583 15 6 3.7244 -6.0127 -3.5963 16 1 2.6506 -5.9746 -3.7054 17 6 4.4511 -7.0535 -4.1853 18 7 5.7157 -7.2158 -3.8923 19 14 3.6154 -8.2112 -5.3898 20 1 2.1930 -7.8161 -5.5503 21 1 4.3009 -8.1363 -6.7051 22 1 3.6882 -9.6012 -4.8721 23 6 5.7195 -4.6663 -3.1811 24 6 6.3631 -3.6904 -2.4544 25 6 5.7101 -3.0552 -1.4126 26 6 4.3994 -3.3870 -1.0819 27 6 3.7464 -2.6615 0.0658 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.7502 1.9303 0.9306 33 1 3.1265 1.4438 -0.0879 34 1 1.6067 1.9811 -0.8428 35 1 1.5960 -0.2694 2.1363 36 1 3.1253 -0.6340 1.3016 37 1 1.9690 -2.9764 4.4070 38 1 0.8649 -4.3690 0.0676 39 1 2.4826 -4.8144 0.6670 40 1 2.2221 -5.8278 -1.5169 41 1 1.6485 -4.2978 -2.2181 42 1 6.2193 -7.9375 -4.3002 43 1 6.2280 -5.1634 -3.9939 44 1 7.3798 -3.4196 -2.6980 45 1 6.2245 -2.2913 -0.8487 46 1 3.9950 -1.6017 0.0088 47 1 4.1185 -3.0679 1.0062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600707413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:20 Heat of formation + Delta-G solvation = -97.045625 kcal Electronic energy + Delta-G solvation = -27782.528535 eV Core-core repulsion = 24121.400601 eV Total energy + Delta-G solvation = -3661.127934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06282 -40.17506 -38.52627 -37.28634 -36.41850 -35.42684 -33.62156 -32.29380 -30.63730 -29.52120 -27.88287 -26.99748 -26.38134 -24.85304 -23.88298 -22.31908 -21.80969 -20.74303 -20.09406 -19.12229 -18.80655 -17.76381 -17.40182 -16.91660 -16.43711 -16.25761 -16.04737 -15.83988 -15.15617 -15.00005 -14.88550 -14.74552 -14.20060 -14.08096 -13.90825 -13.54862 -13.38927 -13.18465 -13.06910 -12.89981 -12.76045 -12.68833 -12.56941 -12.49547 -12.31827 -12.24920 -12.14070 -12.01216 -11.72807 -11.45535 -11.36643 -11.32460 -11.14188 -11.02849 -10.93424 -9.45595 -9.09356 -8.90015 -8.52693 -6.29892 1.00143 1.10809 1.16104 1.38287 1.51379 1.52975 2.11629 2.23007 2.76668 2.81938 3.69875 3.72411 3.95069 4.02477 4.10533 4.22852 4.31319 4.38505 4.43888 4.55093 4.59291 4.65911 4.69599 4.71724 4.75224 4.88064 4.93236 4.98898 5.02072 5.06562 5.13930 5.17999 5.22231 5.23947 5.29061 5.38177 5.45493 5.53864 5.60237 5.66377 5.71999 5.80244 5.89467 5.98485 6.12533 6.22476 6.24149 6.47011 6.76785 6.97759 7.02006 7.11865 8.42950 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.003823 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.326054 B = 7322.638379 C = 7514.077254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.097 4.097 5 C 0.090 3.910 6 H 0.143 0.857 7 C 0.450 3.550 8 O -0.544 6.544 9 O -0.508 6.508 10 N -0.489 5.489 11 C 0.049 3.951 12 C -0.041 4.041 13 C -0.181 4.181 14 C 0.076 3.924 15 C -0.488 4.488 16 H 0.078 0.922 17 C 0.030 3.970 18 N -0.840 5.840 19 Si 0.980 3.020 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.190 4.190 24 C -0.116 4.116 25 C -0.234 4.234 26 C -0.066 4.066 27 C 0.098 3.902 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.421 0.579 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.283 0.717 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 12.259 11.149 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.135 4.135 5 C -0.021 4.021 6 H 0.161 0.839 7 C 0.292 3.708 8 O -0.435 6.435 9 O -0.320 6.320 10 N -0.212 5.212 11 C -0.079 4.079 12 C -0.078 4.078 13 C -0.183 4.183 14 C 0.074 3.926 15 C -0.518 4.518 16 H 0.096 0.904 17 C -0.183 4.183 18 N -0.467 5.467 19 Si 0.802 3.198 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.210 4.210 24 C -0.135 4.135 25 C -0.254 4.254 26 C -0.066 4.066 27 C -0.029 4.029 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.282 0.718 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.109 0.891 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.587 12.321 10.335 19.254 hybrid contribution 1.047 -1.813 0.444 2.140 sum -9.540 10.508 10.779 17.821 Atomic orbital electron populations 1.21839 0.94258 1.01853 1.02098 1.20984 0.96666 0.95813 0.97411 1.21814 1.00583 0.95476 1.02300 1.21713 1.01535 0.89733 1.00504 1.22133 1.02582 0.95936 0.81420 0.83940 1.25589 0.77235 0.81147 0.86827 1.90738 1.34772 1.30546 1.87449 1.84536 1.68234 1.61856 1.17366 1.62828 1.08750 1.14949 1.34683 1.22340 1.00737 0.87930 0.96877 1.20035 0.92936 0.99099 0.95714 1.19788 0.97611 1.02210 0.98685 1.17964 0.92498 0.91435 0.90653 1.19778 0.95207 1.07302 1.29510 0.90408 1.26736 0.95189 0.99521 0.96836 1.69901 1.10088 1.29397 1.37317 0.85180 0.79543 0.77349 0.77753 1.17876 1.19229 1.19455 1.21271 0.97394 0.99910 1.02424 1.20845 0.98609 0.97106 0.96915 1.20578 0.95693 1.06111 1.03003 1.19368 0.94193 0.96409 0.96658 1.21003 0.86862 0.99638 0.95385 0.91516 0.92823 0.92681 0.91799 0.91562 0.93495 0.92443 0.88219 0.92055 0.71804 0.89072 0.93980 0.92751 0.92108 0.90703 0.88365 0.87619 0.87070 0.89065 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.96 71.98 0.65 -1.61 16 2 C -0.09 -1.70 2.85 -10.79 -0.03 -1.73 16 3 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 4 C -0.10 -1.82 3.72 30.60 0.11 -1.71 16 5 C 0.09 2.04 2.14 44.16 0.09 2.13 16 6 H 0.14 2.64 6.45 -2.39 -0.02 2.63 16 7 C 0.45 10.99 6.98 71.23 0.50 11.49 16 8 O -0.54 -18.15 12.40 21.96 0.27 -17.88 16 9 O -0.51 -8.51 13.29 -51.36 -0.68 -9.19 16 10 N -0.49 -15.22 3.95 -880.23 -3.47 -18.69 16 11 C 0.05 1.70 4.91 86.22 0.42 2.12 16 12 C -0.04 -1.73 4.95 29.81 0.15 -1.58 16 13 C -0.18 -9.06 5.83 -19.40 -0.11 -9.17 16 14 C 0.08 4.28 5.56 -21.23 -0.12 4.16 16 15 C -0.49 -26.83 8.05 23.46 0.19 -26.64 16 16 H 0.08 4.10 7.11 -2.91 -0.02 4.08 16 17 C 0.03 1.55 5.26 85.26 0.45 2.00 16 18 N -0.84 -46.16 10.84 21.83 0.24 -45.93 16 19 Si 0.98 39.81 29.57 68.60 2.03 41.84 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 23 C -0.19 -10.61 8.65 22.69 0.20 -10.42 16 24 C -0.12 -5.76 10.02 22.17 0.22 -5.54 16 25 C -0.23 -10.76 9.65 22.53 0.22 -10.55 16 26 C -0.07 -3.01 5.79 -19.89 -0.12 -3.13 16 27 C 0.10 3.55 4.41 85.60 0.38 3.93 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.89 6.54 -2.39 -0.02 0.87 16 31 H 0.06 1.61 7.50 -2.39 -0.02 1.59 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.44 8.06 -2.39 -0.02 1.42 16 36 H 0.06 1.28 6.32 -2.39 -0.02 1.26 16 37 H 0.42 4.02 9.10 -74.06 -0.67 3.34 16 38 H 0.09 2.59 8.00 -2.39 -0.02 2.57 16 39 H 0.04 1.68 5.82 -2.39 -0.01 1.66 16 40 H 0.05 2.44 7.40 -2.39 -0.02 2.43 16 41 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 43 H 0.10 5.75 6.23 -2.91 -0.02 5.73 16 44 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 45 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 46 H 0.09 2.95 6.40 -2.38 -0.02 2.93 16 47 H 0.05 1.90 5.51 -2.39 -0.01 1.89 16 Total: -1.00 -67.81 361.99 2.55 -65.26 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.31 Total: 32.55 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.86 Total: -47.96 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -3.24 Total: -64.62 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.41 Total: -27.07 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -67.81 2.55 -65.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600707413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.789 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds