Wall clock time and date at job start Tue Mar 31 2020 12:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47416 * 2 1 4 4 C 1.52997 * 109.47416 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47100 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46640 * 179.97438 * 5 4 3 7 7 C 1.42907 * 113.99562 * 180.02562 * 6 5 4 8 8 C 1.53504 * 114.20455 * 210.00399 * 7 6 5 9 9 N 1.47064 * 87.98219 * 220.14765 * 8 7 6 10 10 C 1.34772 * 136.05480 * 207.08274 * 9 8 7 11 11 O 1.21612 * 120.00429 * 355.81916 * 10 9 8 12 12 C 1.47437 * 120.00117 * 175.81795 * 10 9 8 13 13 C 1.39229 * 120.27736 * 25.39387 * 12 10 9 14 14 C 1.38225 * 120.08758 * 179.97438 * 13 12 10 15 15 C 1.38818 * 120.67885 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.57064 * 0.02562 * 15 14 13 17 17 C 1.40708 * 119.88382 * 359.97438 * 16 15 14 18 18 C 1.40884 * 120.33197 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00400 * 214.17933 * 18 17 16 20 20 C 1.40280 * 119.99568 * 34.18116 * 18 17 16 21 21 N 1.30624 * 120.00394 * 5.85527 * 20 18 17 22 22 Si 1.86805 * 119.99461 * 185.85145 * 20 18 17 23 23 H 1.48497 * 109.46940 * 60.00416 * 22 20 18 24 24 H 1.48502 * 109.46561 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47381 * 299.99795 * 22 20 18 26 26 C 1.47063 * 87.88538 * 27.34549 * 9 8 7 27 27 H 1.09003 * 109.47547 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47296 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.47396 * 59.99127 * 1 2 3 30 30 H 1.09004 * 109.46961 * 240.00430 * 2 1 3 31 31 H 1.08996 * 109.46930 * 120.00281 * 2 1 3 32 32 H 1.09007 * 109.46874 * 59.99758 * 3 2 1 33 33 H 1.09003 * 109.46870 * 300.00561 * 3 2 1 34 34 H 1.09005 * 109.46558 * 60.00076 * 4 3 2 35 35 H 1.08996 * 109.46930 * 300.00281 * 4 3 2 36 36 H 1.09004 * 109.46739 * 60.00445 * 5 4 3 37 37 H 1.08994 * 109.47097 * 300.00238 * 5 4 3 38 38 H 1.09002 * 113.28374 * 343.06673 * 7 6 5 39 39 H 1.08994 * 113.46269 * 105.36838 * 8 7 6 40 40 H 1.08992 * 113.46791 * 334.92894 * 8 7 6 41 41 H 1.07999 * 119.95801 * 359.97250 * 13 12 10 42 42 H 1.08002 * 119.65971 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.71720 * 179.72652 * 15 14 13 44 44 H 1.07998 * 120.06189 * 179.97438 * 16 15 14 45 45 H 0.96997 * 120.00540 * 180.02562 * 21 20 18 46 46 H 1.08995 * 113.47123 * 87.43516 * 26 9 8 47 47 H 1.09002 * 113.46618 * 217.87437 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5090 2.8849 0.0012 7 6 6.0903 4.1904 0.0013 8 6 7.4545 4.2720 -0.6977 9 7 7.8929 5.1751 0.3770 10 6 8.7957 6.1679 0.5023 11 8 9.5351 6.4380 -0.4246 12 6 8.8869 6.9266 1.7632 13 6 8.4755 6.3489 2.9613 14 6 8.5632 7.0636 4.1413 15 6 9.0593 8.3601 4.1488 16 6 9.4726 8.9581 2.9805 17 6 9.3938 8.2524 1.7658 18 6 9.8149 8.8553 0.5641 19 1 9.3055 8.6293 -0.3609 20 6 10.8959 9.7493 0.5692 21 7 11.5842 9.9358 1.6637 22 14 11.3512 10.6731 -0.9893 23 1 10.2006 11.5040 -1.4262 24 1 12.5211 11.5480 -0.7221 25 1 11.6944 9.7013 -2.0584 26 6 6.9173 4.5137 1.2565 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9285 -0.8892 35 1 3.9329 0.9287 0.8908 36 1 3.7163 3.3993 0.8896 37 1 3.7170 3.3983 -0.8904 38 1 5.3907 4.9735 -0.2911 39 1 7.4127 4.7499 -1.6764 40 1 7.9914 3.3236 -0.7137 41 1 8.0873 5.3411 2.9689 42 1 8.2418 6.6089 5.0667 43 1 9.1169 8.9059 5.0790 44 1 9.8568 9.9673 2.9959 45 1 12.3314 10.5542 1.6674 46 1 7.3125 3.6291 1.7556 47 1 6.4179 5.1977 1.9427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601270311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:00 Heat of formation + Delta-G solvation = -38.526203 kcal Electronic energy + Delta-G solvation = -25662.377586 eV Core-core repulsion = 22003.787245 eV Total energy + Delta-G solvation = -3658.590342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.09271 -38.24760 -37.16446 -36.29693 -35.51321 -33.69107 -31.58877 -30.25628 -29.74873 -28.12727 -26.13943 -25.80427 -25.25753 -22.61011 -22.20880 -21.41211 -20.97199 -20.61631 -18.60531 -17.34487 -17.08703 -16.43276 -16.33594 -15.56751 -15.21583 -14.90516 -14.82769 -14.39393 -14.12824 -13.89517 -13.64078 -13.24889 -13.07011 -12.96243 -12.73080 -12.60424 -12.39421 -12.09802 -11.95846 -11.61596 -11.59507 -11.46670 -11.31215 -11.11617 -11.05990 -10.98924 -10.95905 -10.81159 -10.73435 -10.50415 -9.99895 -9.72062 -9.41688 -9.26808 -8.63344 -8.15130 -7.58953 -7.37545 -6.76969 -4.40500 2.37104 2.82643 3.09285 3.14330 3.17236 3.25720 3.70600 3.97868 4.07400 4.39310 4.55784 4.57419 4.66023 4.72031 4.87498 4.89103 5.01246 5.18212 5.24890 5.27833 5.39704 5.44301 5.51629 5.56894 5.59139 5.67028 5.70727 5.72483 5.73303 5.80791 5.89198 5.96733 5.97718 6.04148 6.06327 6.26972 6.37893 6.74717 6.97787 7.10138 7.13137 7.21967 7.45626 7.63884 7.90596 7.97877 8.16028 8.39508 8.61663 8.78919 8.86231 9.27539 10.17202 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002401 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.289727 B =11661.245761 C =12529.439043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.060 3.940 6 O -0.371 6.371 7 C 0.048 3.952 8 C 0.105 3.895 9 N -0.651 5.651 10 C 0.603 3.397 11 O -0.529 6.529 12 C -0.253 4.253 13 C -0.062 4.062 14 C -0.246 4.246 15 C -0.094 4.094 16 C -0.149 4.149 17 C 0.147 3.853 18 C -0.418 4.418 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.795 5.795 22 Si 0.918 3.082 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.087 3.913 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.283 0.717 46 H 0.084 0.916 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -12.953 -1.565 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.017 4.017 6 O -0.288 6.288 7 C -0.011 4.011 8 C -0.019 4.019 9 N -0.391 5.391 10 C 0.399 3.601 11 O -0.405 6.405 12 C -0.257 4.257 13 C -0.080 4.080 14 C -0.265 4.265 15 C -0.113 4.113 16 C -0.168 4.168 17 C 0.143 3.857 18 C -0.446 4.446 19 H 0.106 0.894 20 C -0.146 4.146 21 N -0.421 5.421 22 Si 0.742 3.258 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.037 4.037 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.624 -12.634 -1.976 20.190 hybrid contribution 0.235 0.469 -0.431 0.678 sum -15.389 -12.165 -2.407 19.764 Atomic orbital electron populations 1.21783 0.95870 1.01598 1.01849 1.21515 0.95813 0.96663 1.02213 1.21543 0.94519 0.97189 1.02347 1.21541 0.95050 0.95691 1.03410 1.22592 0.81051 0.97716 1.00325 1.87898 1.19579 1.26884 1.94489 1.24112 0.94050 0.85315 0.97627 1.22960 0.91201 0.94119 0.93570 1.49389 1.40469 1.34926 1.14334 1.18101 0.76836 0.76732 0.88411 1.90731 1.40894 1.66917 1.41983 1.19383 1.19389 0.96143 0.90822 1.20853 0.97119 0.97385 0.92675 1.20302 1.13098 0.96866 0.96274 1.20827 0.98523 0.94919 0.97040 1.21382 1.03177 1.00416 0.91841 1.17443 0.86486 0.88293 0.93474 1.19739 1.11317 1.18170 0.95419 0.89400 1.26017 0.95629 0.95008 0.97972 1.69676 1.15123 1.28914 1.28353 0.86199 0.78461 0.79301 0.81851 1.18824 1.20343 1.18605 1.23463 0.88548 0.96766 0.94925 0.92799 0.92712 0.92760 0.91941 0.91891 0.91737 0.91813 0.91143 0.91049 0.93100 0.93244 0.88092 0.90530 0.89974 0.88669 0.89091 0.89029 0.86029 0.90630 0.89809 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.74 5.93 -26.73 -0.16 -0.89 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.92 5.58 -26.73 -0.15 -1.07 16 5 C 0.06 0.54 5.78 37.16 0.21 0.76 16 6 O -0.37 -4.39 10.40 -35.23 -0.37 -4.75 16 7 C 0.05 0.61 4.68 -26.08 -0.12 0.49 16 8 C 0.11 1.61 8.45 -8.51 -0.07 1.54 16 9 N -0.65 -12.41 3.67 -186.39 -0.68 -13.10 16 10 C 0.60 14.68 7.63 -12.52 -0.10 14.59 16 11 O -0.53 -14.69 15.15 5.27 0.08 -14.61 16 12 C -0.25 -6.36 5.89 -104.36 -0.61 -6.97 16 13 C -0.06 -1.36 8.74 -39.22 -0.34 -1.70 16 14 C -0.25 -5.31 10.03 -39.37 -0.39 -5.70 16 15 C -0.09 -2.14 10.01 -39.60 -0.40 -2.54 16 16 C -0.15 -3.81 8.62 -38.88 -0.34 -4.15 16 17 C 0.15 4.00 5.52 -106.54 -0.59 3.42 16 18 C -0.42 -11.63 7.51 -37.81 -0.28 -11.91 16 19 H 0.09 2.51 6.57 -52.49 -0.34 2.16 16 20 C 0.07 1.87 5.31 -17.30 -0.09 1.78 16 21 N -0.80 -20.88 10.97 55.56 0.61 -20.28 16 22 Si 0.92 19.93 29.57 -169.99 -5.03 14.90 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 26 C 0.09 1.28 6.06 -8.38 -0.05 1.23 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 1.18 7.88 -51.93 -0.41 0.77 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.81 5.41 -52.49 -0.28 1.52 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.12 3.17 6.47 -52.49 -0.34 2.83 16 45 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.18 7.12 -51.93 -0.37 0.81 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -30.88 383.79 -10.50 -41.38 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.65 Total: 3.16 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.25 Total: -12.49 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.08 Total: -33.37 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.29 Total: -19.37 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.88 -10.50 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601270311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.855 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds