Wall clock time and date at job start Tue Mar 31 2020 12:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47416 * 2 1 4 4 C 1.52997 * 109.47416 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47100 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46640 * 179.97438 * 5 4 3 7 7 C 1.42907 * 113.99562 * 180.02562 * 6 5 4 8 8 C 1.53504 * 114.20455 * 210.00399 * 7 6 5 9 9 N 1.47064 * 87.98219 * 220.14765 * 8 7 6 10 10 C 1.34772 * 136.05480 * 207.08274 * 9 8 7 11 11 O 1.21612 * 120.00429 * 355.81916 * 10 9 8 12 12 C 1.47437 * 120.00117 * 175.81795 * 10 9 8 13 13 C 1.39229 * 120.27736 * 25.39387 * 12 10 9 14 14 C 1.38225 * 120.08758 * 179.97438 * 13 12 10 15 15 C 1.38818 * 120.67885 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.57064 * 0.02562 * 15 14 13 17 17 C 1.40708 * 119.88382 * 359.97438 * 16 15 14 18 18 C 1.40884 * 120.33197 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00400 * 214.17933 * 18 17 16 20 20 C 1.40280 * 119.99568 * 34.18116 * 18 17 16 21 21 N 1.30624 * 120.00394 * 5.85527 * 20 18 17 22 22 Si 1.86805 * 119.99461 * 185.85145 * 20 18 17 23 23 H 1.48497 * 109.46940 * 60.00416 * 22 20 18 24 24 H 1.48502 * 109.46561 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47381 * 299.99795 * 22 20 18 26 26 C 1.47063 * 87.88538 * 27.34549 * 9 8 7 27 27 H 1.09003 * 109.47547 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47296 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.47396 * 59.99127 * 1 2 3 30 30 H 1.09004 * 109.46961 * 240.00430 * 2 1 3 31 31 H 1.08996 * 109.46930 * 120.00281 * 2 1 3 32 32 H 1.09007 * 109.46874 * 59.99758 * 3 2 1 33 33 H 1.09003 * 109.46870 * 300.00561 * 3 2 1 34 34 H 1.09005 * 109.46558 * 60.00076 * 4 3 2 35 35 H 1.08996 * 109.46930 * 300.00281 * 4 3 2 36 36 H 1.09004 * 109.46739 * 60.00445 * 5 4 3 37 37 H 1.08994 * 109.47097 * 300.00238 * 5 4 3 38 38 H 1.09002 * 113.28374 * 343.06673 * 7 6 5 39 39 H 1.08994 * 113.46269 * 105.36838 * 8 7 6 40 40 H 1.08992 * 113.46791 * 334.92894 * 8 7 6 41 41 H 1.07999 * 119.95801 * 359.97250 * 13 12 10 42 42 H 1.08002 * 119.65971 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.71720 * 179.72652 * 15 14 13 44 44 H 1.07998 * 120.06189 * 179.97438 * 16 15 14 45 45 H 0.96997 * 120.00540 * 180.02562 * 21 20 18 46 46 H 1.08995 * 113.47123 * 87.43516 * 26 9 8 47 47 H 1.09002 * 113.46618 * 217.87437 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5090 2.8849 0.0012 7 6 6.0903 4.1904 0.0013 8 6 7.4545 4.2720 -0.6977 9 7 7.8929 5.1751 0.3770 10 6 8.7957 6.1679 0.5023 11 8 9.5351 6.4380 -0.4246 12 6 8.8869 6.9266 1.7632 13 6 8.4755 6.3489 2.9613 14 6 8.5632 7.0636 4.1413 15 6 9.0593 8.3601 4.1488 16 6 9.4726 8.9581 2.9805 17 6 9.3938 8.2524 1.7658 18 6 9.8149 8.8553 0.5641 19 1 9.3055 8.6293 -0.3609 20 6 10.8959 9.7493 0.5692 21 7 11.5842 9.9358 1.6637 22 14 11.3512 10.6731 -0.9893 23 1 10.2006 11.5040 -1.4262 24 1 12.5211 11.5480 -0.7221 25 1 11.6944 9.7013 -2.0584 26 6 6.9173 4.5137 1.2565 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9285 -0.8892 35 1 3.9329 0.9287 0.8908 36 1 3.7163 3.3993 0.8896 37 1 3.7170 3.3983 -0.8904 38 1 5.3907 4.9735 -0.2911 39 1 7.4127 4.7499 -1.6764 40 1 7.9914 3.3236 -0.7137 41 1 8.0873 5.3411 2.9689 42 1 8.2418 6.6089 5.0667 43 1 9.1169 8.9059 5.0790 44 1 9.8568 9.9673 2.9959 45 1 12.3314 10.5542 1.6674 46 1 7.3125 3.6291 1.7556 47 1 6.4179 5.1977 1.9427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601270311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:59 Heat of formation + Delta-G solvation = -55.455700 kcal Electronic energy + Delta-G solvation = -25663.111705 eV Core-core repulsion = 22003.787245 eV Total energy + Delta-G solvation = -3659.324460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48922 -39.76872 -38.51982 -37.73977 -36.29621 -35.58138 -32.38017 -31.92762 -31.58001 -29.59450 -27.30883 -27.04030 -26.65640 -24.18561 -22.81729 -22.80607 -22.29141 -21.70217 -20.17531 -19.16491 -18.24961 -17.87975 -17.38670 -17.05786 -16.71119 -16.06039 -16.00268 -15.80505 -15.50411 -14.96272 -14.83078 -14.59718 -14.46040 -14.18453 -14.03623 -13.80188 -13.63774 -13.47175 -13.31602 -13.00252 -12.87099 -12.75608 -12.62177 -12.38530 -12.25919 -12.13667 -11.92076 -11.89430 -11.74753 -11.57118 -11.47321 -11.35322 -11.17402 -10.56270 -10.36287 -9.74347 -9.41041 -9.25340 -8.67061 -6.40278 0.50724 0.99903 1.31031 1.42637 1.49130 1.84056 2.17523 2.19371 2.71259 2.77035 3.25954 3.66114 3.76193 3.93206 4.03228 4.03895 4.20602 4.26702 4.32932 4.36224 4.48211 4.50988 4.52768 4.55368 4.58724 4.63509 4.73733 4.74626 4.77708 4.92595 4.96482 5.05649 5.07436 5.13100 5.14775 5.21801 5.24918 5.32700 5.35403 5.46826 5.53495 5.59080 5.81465 6.03829 6.07407 6.22912 6.29585 6.58629 6.78903 6.87426 6.93144 7.47745 8.29189 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002401 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.289727 B =11661.245761 C =12529.439043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.115 4.115 5 C 0.053 3.947 6 O -0.377 6.377 7 C 0.076 3.924 8 C 0.096 3.904 9 N -0.657 5.657 10 C 0.595 3.405 11 O -0.581 6.581 12 C -0.271 4.271 13 C -0.060 4.060 14 C -0.234 4.234 15 C -0.091 4.091 16 C -0.175 4.175 17 C 0.115 3.885 18 C -0.457 4.457 19 H 0.064 0.936 20 C 0.032 3.968 21 N -0.824 5.824 22 Si 0.979 3.021 23 H -0.254 1.254 24 H -0.257 1.257 25 H -0.277 1.277 26 C 0.083 3.917 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.290 0.710 46 H 0.101 0.899 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.522 -14.435 -0.304 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.153 4.153 5 C -0.023 4.023 6 O -0.295 6.295 7 C 0.017 3.983 8 C -0.027 4.027 9 N -0.394 5.394 10 C 0.391 3.609 11 O -0.462 6.462 12 C -0.276 4.276 13 C -0.078 4.078 14 C -0.253 4.253 15 C -0.109 4.109 16 C -0.195 4.195 17 C 0.111 3.889 18 C -0.486 4.486 19 H 0.082 0.918 20 C -0.183 4.183 21 N -0.450 5.450 22 Si 0.800 3.200 23 H -0.178 1.178 24 H -0.180 1.180 25 H -0.202 1.202 26 C -0.039 4.039 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.119 0.881 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.670 -14.162 -0.681 22.655 hybrid contribution 0.681 0.685 -0.704 1.196 sum -16.988 -13.477 -1.386 21.729 Atomic orbital electron populations 1.21785 0.95460 1.01905 1.01973 1.21519 0.96181 0.96403 1.02180 1.21513 0.93448 0.97525 1.02695 1.21516 0.95887 0.94769 1.03083 1.22832 0.79372 0.98811 1.01318 1.87891 1.21398 1.25884 1.94343 1.23723 0.93054 0.86322 0.95229 1.23235 0.93002 0.93532 0.92895 1.49231 1.39185 1.33884 1.17146 1.18053 0.77287 0.77844 0.87704 1.90684 1.43351 1.68845 1.43301 1.19740 1.19275 0.95916 0.92684 1.21208 0.96160 0.98805 0.91626 1.20818 1.10713 0.96065 0.97688 1.21212 0.96843 0.95710 0.97136 1.21335 1.05184 1.00210 0.92723 1.17827 0.87398 0.89636 0.94044 1.19709 1.13175 1.20732 0.94966 0.91813 1.26728 0.95047 0.95445 1.01050 1.69705 1.15742 1.29827 1.29775 0.85303 0.79072 0.77986 0.77593 1.17814 1.18043 1.20201 1.23752 0.87639 0.96909 0.95619 0.92457 0.92586 0.92641 0.92014 0.91938 0.91367 0.91480 0.91539 0.91346 0.92066 0.92301 0.86694 0.90895 0.88957 0.85287 0.84825 0.85923 0.87602 0.89933 0.88141 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.13 -1.25 5.93 30.59 0.18 -1.07 16 3 C -0.11 -1.19 5.21 30.59 0.16 -1.03 16 4 C -0.11 -1.50 5.58 30.59 0.17 -1.33 16 5 C 0.05 0.80 5.78 71.98 0.42 1.21 16 6 O -0.38 -7.82 10.40 -148.98 -1.55 -9.36 16 7 C 0.08 1.74 4.68 31.02 0.15 1.88 16 8 C 0.10 2.83 8.45 83.18 0.70 3.54 16 9 N -0.66 -24.61 3.67 -862.34 -3.17 -27.78 16 10 C 0.60 29.73 7.63 86.67 0.66 30.39 16 11 O -0.58 -34.01 15.15 -4.07 -0.06 -34.07 16 12 C -0.27 -13.83 5.89 -19.70 -0.12 -13.94 16 13 C -0.06 -2.49 8.74 22.50 0.20 -2.30 16 14 C -0.23 -9.29 10.03 22.41 0.22 -9.06 16 15 C -0.09 -3.96 10.01 22.26 0.22 -3.73 16 16 C -0.18 -9.15 8.62 22.72 0.20 -8.96 16 17 C 0.11 6.48 5.52 -21.11 -0.12 6.36 16 18 C -0.46 -26.94 7.51 23.41 0.18 -26.77 16 19 H 0.06 3.93 6.57 -2.91 -0.02 3.91 16 20 C 0.03 1.73 5.31 85.37 0.45 2.18 16 21 N -0.82 -44.94 10.97 21.88 0.24 -44.70 16 22 Si 0.98 42.59 29.57 68.60 2.03 44.62 16 23 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 C 0.08 2.23 6.06 83.26 0.50 2.73 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 2.36 7.88 -2.39 -0.02 2.34 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.13 4.43 5.41 -2.91 -0.02 4.41 16 42 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.11 5.76 6.47 -2.91 -0.02 5.74 16 45 H 0.29 14.27 8.29 -92.71 -0.77 13.50 16 46 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 47 H 0.09 2.29 7.12 -2.39 -0.02 2.27 16 Total: -1.00 -70.95 383.79 3.32 -67.63 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.94 Total: 24.22 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.89 Total: -20.55 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -2.93 Total: -72.48 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.61 Total: -43.43 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -70.95 3.32 -67.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601270311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.175 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds