Wall clock time and date at job start Tue Mar 31 2020 12:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47558 * 2 1 4 4 C 1.53009 * 109.47019 * 120.00281 * 2 1 3 5 5 H 1.09000 * 109.47919 * 60.01881 * 4 2 1 6 6 C 1.53089 * 109.49003 * 180.02562 * 4 2 1 7 7 C 1.53171 * 109.16463 * 177.59443 * 6 4 2 8 8 H 1.09008 * 109.54664 * 183.15385 * 7 6 4 9 9 N 1.46502 * 109.54283 * 62.97610 * 7 6 4 10 10 C 1.34782 * 119.99919 * 155.00440 * 9 7 6 11 11 O 1.21609 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.47430 * 119.99590 * 179.97438 * 10 9 7 13 13 C 1.39223 * 120.28452 * 354.15053 * 12 10 9 14 14 C 1.38219 * 120.08883 * 179.97438 * 13 12 10 15 15 C 1.38830 * 120.68162 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.56468 * 359.97438 * 15 14 13 17 17 C 1.40705 * 119.88415 * 359.73935 * 16 15 14 18 18 C 1.40888 * 120.32861 * 180.25326 * 17 16 15 19 19 H 1.08006 * 119.99739 * 146.07695 * 18 17 16 20 20 C 1.40265 * 120.00013 * 326.08208 * 18 17 16 21 21 N 1.30624 * 120.00212 * 350.69020 * 20 18 17 22 22 Si 1.86805 * 120.00048 * 170.68885 * 20 18 17 23 23 H 1.48495 * 109.47006 * 89.99928 * 22 20 18 24 24 H 1.48501 * 109.47186 * 210.00386 * 22 20 18 25 25 H 1.48500 * 109.46954 * 330.00307 * 22 20 18 26 26 C 1.53183 * 109.03734 * 303.01731 * 7 6 4 27 27 C 1.53093 * 109.15760 * 56.98066 * 26 7 6 28 28 O 1.42903 * 109.47472 * 299.99764 * 4 2 1 29 29 H 1.09006 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46990 * 300.00165 * 1 2 3 31 31 H 1.08994 * 109.46985 * 60.00152 * 1 2 3 32 32 H 1.09006 * 109.47380 * 239.99850 * 2 1 3 33 33 H 1.08996 * 109.47291 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46673 * 300.00402 * 3 2 1 35 35 H 1.09006 * 109.46898 * 59.99555 * 3 2 1 36 36 H 1.09001 * 109.52430 * 297.50055 * 6 4 2 37 37 H 1.09002 * 109.52424 * 57.68302 * 6 4 2 38 38 H 0.96996 * 119.99625 * 334.99559 * 9 7 6 39 39 H 1.07994 * 119.95677 * 359.97438 * 13 12 10 40 40 H 1.08004 * 119.66233 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.71514 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.05229 * 179.97438 * 16 15 14 43 43 H 0.97006 * 120.00205 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.52377 * 297.07800 * 26 7 6 45 45 H 1.08993 * 109.52299 * 176.88291 * 26 7 6 46 46 H 1.09009 * 109.47594 * 182.40995 * 27 26 7 47 47 H 1.08997 * 109.48229 * 62.37609 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.6770 -1.7491 1.2492 6 6 3.5709 -0.7211 1.2501 7 6 4.0732 -1.3914 2.5324 8 1 5.1618 -1.3447 2.5661 9 7 3.6418 -2.7913 2.5550 10 6 4.3372 -3.6994 3.2680 11 8 5.3231 -3.3567 3.8922 12 6 3.9027 -5.1080 3.2911 13 6 2.7098 -5.4848 2.6803 14 6 2.3065 -6.8067 2.7039 15 6 3.0802 -7.7722 3.3338 16 6 4.2640 -7.4302 3.9461 17 6 4.7002 -6.0926 3.9312 18 6 5.9134 -5.7329 4.5507 19 1 6.5206 -4.9441 4.1316 20 6 6.3328 -6.3994 5.7114 21 7 5.5219 -7.2223 6.3212 22 14 8.0508 -6.1104 6.3854 23 1 8.0219 -4.9777 7.3452 24 1 8.5230 -7.3355 7.0793 25 1 8.9734 -5.7882 5.2672 26 6 3.4912 -0.6543 3.7426 27 6 1.9633 -0.6572 3.6455 28 8 1.5637 -0.0478 2.4162 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9357 -1.2728 0.3837 37 1 3.9350 0.3055 1.2089 38 1 2.8556 -3.0645 2.0569 39 1 2.0986 -4.7434 2.1873 40 1 1.3800 -7.0915 2.2275 41 1 2.7500 -8.8004 3.3432 42 1 4.8592 -8.1880 4.4341 43 1 5.8121 -7.6835 7.1237 44 1 3.8536 0.3736 3.7518 45 1 3.7989 -1.1583 4.6586 46 1 1.5449 -0.0970 4.4817 47 1 1.5990 -1.6840 3.6770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601404349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:16 Heat of formation + Delta-G solvation = -80.618040 kcal Electronic energy + Delta-G solvation = -27405.635974 eV Core-core repulsion = 23745.220394 eV Total energy + Delta-G solvation = -3660.415581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20504 -38.57097 -36.80874 -35.34061 -34.53462 -33.68743 -31.34902 -30.08872 -29.87372 -29.16280 -27.25651 -25.54874 -24.86027 -23.58178 -22.48180 -21.04931 -20.36799 -19.86829 -18.84690 -17.53475 -16.65819 -16.14801 -15.86405 -15.46111 -15.21702 -14.95720 -14.51430 -14.25828 -14.09104 -13.92540 -13.46167 -13.30973 -13.06925 -12.74974 -12.68985 -12.41059 -12.33506 -11.99860 -11.91182 -11.72402 -11.59881 -11.36980 -11.11061 -11.07104 -10.97539 -10.81712 -10.71554 -10.60250 -10.53354 -10.15341 -10.08050 -9.69435 -9.34517 -9.27409 -8.48830 -8.32943 -7.60466 -7.37098 -6.80993 -4.39941 2.34649 2.79966 3.09022 3.16204 3.22488 3.76581 3.92213 3.96598 4.14003 4.54602 4.67168 4.69249 4.89847 4.95630 5.08215 5.13508 5.22333 5.33674 5.46441 5.56448 5.61511 5.62771 5.64327 5.74904 5.79486 5.89334 5.95053 5.95322 5.98951 6.05893 6.06909 6.22907 6.23138 6.26543 6.30354 6.33545 6.61293 6.93955 7.08100 7.14986 7.22886 7.27447 7.44753 7.60840 7.87194 7.96761 8.16239 8.36129 8.65094 8.81004 8.88496 9.39685 10.14246 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003710 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.922013 B = 7544.905344 C = 8586.289515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.095 3.905 5 H 0.055 0.945 6 C -0.158 4.158 7 C 0.148 3.852 8 H 0.088 0.912 9 N -0.745 5.745 10 C 0.566 3.434 11 O -0.537 6.537 12 C -0.263 4.263 13 C -0.057 4.057 14 C -0.245 4.245 15 C -0.096 4.096 16 C -0.148 4.148 17 C 0.146 3.854 18 C -0.415 4.415 19 H 0.105 0.895 20 C 0.070 3.930 21 N -0.793 5.793 22 Si 0.917 3.083 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.259 1.259 26 C -0.165 4.165 27 C 0.064 3.936 28 O -0.376 6.376 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.389 0.611 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.282 0.718 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 11.131 -8.673 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.037 3.963 5 H 0.073 0.927 6 C -0.196 4.196 7 C 0.043 3.957 8 H 0.106 0.894 9 N -0.400 5.400 10 C 0.360 3.640 11 O -0.415 6.415 12 C -0.267 4.267 13 C -0.076 4.076 14 C -0.265 4.265 15 C -0.115 4.115 16 C -0.167 4.167 17 C 0.142 3.858 18 C -0.444 4.444 19 H 0.122 0.878 20 C -0.149 4.149 21 N -0.418 5.418 22 Si 0.742 3.258 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.183 1.183 26 C -0.204 4.204 27 C -0.013 4.013 28 O -0.295 6.295 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.224 0.776 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.135 0.865 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.790 11.397 -8.008 15.085 hybrid contribution 0.335 -0.399 0.298 0.601 sum -5.455 10.998 -7.710 14.496 Atomic orbital electron populations 1.21771 0.94700 1.01757 1.01945 1.21152 0.96507 0.97001 0.95903 1.21821 1.00915 0.95626 1.01868 1.22068 0.92688 0.95421 0.86116 0.92687 1.22556 0.96550 1.02181 0.98337 1.20734 1.00112 0.81535 0.93333 0.89433 1.46178 1.32494 1.07571 1.53740 1.18430 0.82236 0.85544 0.77805 1.90671 1.26588 1.80948 1.43299 1.19464 0.99049 0.91592 1.16644 1.20618 0.94806 0.95152 0.97053 1.20276 1.01855 0.93614 1.10735 1.20800 0.95491 0.97247 0.97916 1.21367 0.97130 0.96511 1.01697 1.17470 0.90917 0.89917 0.87494 1.20154 1.03350 1.14672 1.06190 0.87773 1.26114 0.99037 0.92777 0.96934 1.69715 1.35728 1.20838 1.15532 0.86156 0.81685 0.78407 0.79589 1.19322 1.20312 1.18325 1.22550 0.96476 1.01013 1.00371 1.22524 0.94298 0.98212 0.86269 1.87871 1.74581 1.53691 1.13332 0.92887 0.91781 0.92984 0.90254 0.92566 0.93135 0.91780 0.90449 0.89642 0.77632 0.89538 0.89152 0.89094 0.86460 0.90714 0.90909 0.90054 0.89206 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.05 37.16 0.34 -0.98 16 2 C -0.09 -0.82 2.81 -90.62 -0.25 -1.07 16 3 C -0.15 -1.29 8.70 37.16 0.32 -0.96 16 4 C 0.10 1.07 2.20 -26.68 -0.06 1.01 16 5 H 0.06 0.64 6.72 -51.93 -0.35 0.30 16 6 C -0.16 -1.83 4.78 -26.60 -0.13 -1.95 16 7 C 0.15 2.20 2.81 -67.75 -0.19 2.01 16 8 H 0.09 1.46 7.57 -51.92 -0.39 1.07 16 9 N -0.74 -12.80 4.36 -54.70 -0.24 -13.03 16 10 C 0.57 12.76 7.69 -12.51 -0.10 12.67 16 11 O -0.54 -13.78 13.26 5.27 0.07 -13.71 16 12 C -0.26 -6.33 5.92 -104.37 -0.62 -6.95 16 13 C -0.06 -1.21 9.52 -39.22 -0.37 -1.59 16 14 C -0.25 -5.18 10.03 -39.37 -0.39 -5.57 16 15 C -0.10 -2.15 10.01 -39.59 -0.40 -2.54 16 16 C -0.15 -3.74 8.62 -38.88 -0.34 -4.07 16 17 C 0.15 3.89 5.51 -106.54 -0.59 3.30 16 18 C -0.42 -11.34 7.67 -37.82 -0.29 -11.63 16 19 H 0.10 2.94 5.93 -52.48 -0.31 2.63 16 20 C 0.07 1.78 5.25 -17.30 -0.09 1.69 16 21 N -0.79 -20.51 11.13 55.56 0.62 -19.89 16 22 Si 0.92 19.63 29.57 -169.99 -5.03 14.60 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.17 -2.33 5.81 -26.59 -0.15 -2.49 16 27 C 0.06 0.83 6.68 37.21 0.25 1.07 16 28 O -0.38 -4.70 9.06 -35.23 -0.32 -5.02 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.48 6.38 -51.93 -0.33 0.15 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.91 6.31 -51.93 -0.33 0.58 16 38 H 0.39 5.98 5.14 -40.82 -0.21 5.77 16 39 H 0.09 1.52 6.44 -52.49 -0.34 1.18 16 40 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.12 3.03 6.58 -52.48 -0.35 2.68 16 43 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 47 H 0.05 0.74 7.75 -51.93 -0.40 0.34 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -28.94 365.50 -9.62 -38.55 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.17 Total: 11.04 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -3.06 Total: -18.06 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.38 Total: -32.92 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.25 Total: -18.72 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.94 -9.62 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601404349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.064 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds