Wall clock time and date at job start Tue Mar 31 2020 12:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47558 * 2 1 4 4 C 1.53009 * 109.47019 * 120.00281 * 2 1 3 5 5 H 1.09000 * 109.47919 * 60.01881 * 4 2 1 6 6 C 1.53089 * 109.49003 * 180.02562 * 4 2 1 7 7 C 1.53171 * 109.16463 * 177.59443 * 6 4 2 8 8 H 1.09008 * 109.54664 * 183.15385 * 7 6 4 9 9 N 1.46502 * 109.54283 * 62.97610 * 7 6 4 10 10 C 1.34782 * 119.99919 * 155.00440 * 9 7 6 11 11 O 1.21609 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.47430 * 119.99590 * 179.97438 * 10 9 7 13 13 C 1.39223 * 120.28452 * 354.15053 * 12 10 9 14 14 C 1.38219 * 120.08883 * 179.97438 * 13 12 10 15 15 C 1.38830 * 120.68162 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.56468 * 359.97438 * 15 14 13 17 17 C 1.40705 * 119.88415 * 359.73935 * 16 15 14 18 18 C 1.40888 * 120.32861 * 180.25326 * 17 16 15 19 19 H 1.08006 * 119.99739 * 146.07695 * 18 17 16 20 20 C 1.40265 * 120.00013 * 326.08208 * 18 17 16 21 21 N 1.30624 * 120.00212 * 350.69020 * 20 18 17 22 22 Si 1.86805 * 120.00048 * 170.68885 * 20 18 17 23 23 H 1.48495 * 109.47006 * 89.99928 * 22 20 18 24 24 H 1.48501 * 109.47186 * 210.00386 * 22 20 18 25 25 H 1.48500 * 109.46954 * 330.00307 * 22 20 18 26 26 C 1.53183 * 109.03734 * 303.01731 * 7 6 4 27 27 C 1.53093 * 109.15760 * 56.98066 * 26 7 6 28 28 O 1.42903 * 109.47472 * 299.99764 * 4 2 1 29 29 H 1.09006 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46990 * 300.00165 * 1 2 3 31 31 H 1.08994 * 109.46985 * 60.00152 * 1 2 3 32 32 H 1.09006 * 109.47380 * 239.99850 * 2 1 3 33 33 H 1.08996 * 109.47291 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46673 * 300.00402 * 3 2 1 35 35 H 1.09006 * 109.46898 * 59.99555 * 3 2 1 36 36 H 1.09001 * 109.52430 * 297.50055 * 6 4 2 37 37 H 1.09002 * 109.52424 * 57.68302 * 6 4 2 38 38 H 0.96996 * 119.99625 * 334.99559 * 9 7 6 39 39 H 1.07994 * 119.95677 * 359.97438 * 13 12 10 40 40 H 1.08004 * 119.66233 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.71514 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.05229 * 179.97438 * 16 15 14 43 43 H 0.97006 * 120.00205 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.52377 * 297.07800 * 26 7 6 45 45 H 1.08993 * 109.52299 * 176.88291 * 26 7 6 46 46 H 1.09009 * 109.47594 * 182.40995 * 27 26 7 47 47 H 1.08997 * 109.48229 * 62.37609 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.6770 -1.7491 1.2492 6 6 3.5709 -0.7211 1.2501 7 6 4.0732 -1.3914 2.5324 8 1 5.1618 -1.3447 2.5661 9 7 3.6418 -2.7913 2.5550 10 6 4.3372 -3.6994 3.2680 11 8 5.3231 -3.3567 3.8922 12 6 3.9027 -5.1080 3.2911 13 6 2.7098 -5.4848 2.6803 14 6 2.3065 -6.8067 2.7039 15 6 3.0802 -7.7722 3.3338 16 6 4.2640 -7.4302 3.9461 17 6 4.7002 -6.0926 3.9312 18 6 5.9134 -5.7329 4.5507 19 1 6.5206 -4.9441 4.1316 20 6 6.3328 -6.3994 5.7114 21 7 5.5219 -7.2223 6.3212 22 14 8.0508 -6.1104 6.3854 23 1 8.0219 -4.9777 7.3452 24 1 8.5230 -7.3355 7.0793 25 1 8.9734 -5.7882 5.2672 26 6 3.4912 -0.6543 3.7426 27 6 1.9633 -0.6572 3.6455 28 8 1.5637 -0.0478 2.4162 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9357 -1.2728 0.3837 37 1 3.9350 0.3055 1.2089 38 1 2.8556 -3.0645 2.0569 39 1 2.0986 -4.7434 2.1873 40 1 1.3800 -7.0915 2.2275 41 1 2.7500 -8.8004 3.3432 42 1 4.8592 -8.1880 4.4341 43 1 5.8121 -7.6835 7.1237 44 1 3.8536 0.3736 3.7518 45 1 3.7989 -1.1583 4.6586 46 1 1.5449 -0.0970 4.4817 47 1 1.5990 -1.6840 3.6770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601404349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:15 Heat of formation + Delta-G solvation = -96.264122 kcal Electronic energy + Delta-G solvation = -27406.314439 eV Core-core repulsion = 23745.220394 eV Total energy + Delta-G solvation = -3661.094046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44377 -40.12000 -38.52219 -36.36600 -35.85414 -35.46554 -32.87069 -31.71358 -31.09474 -30.79110 -27.96087 -27.34740 -26.01685 -24.59291 -24.16842 -22.81710 -21.46183 -21.28861 -20.15174 -19.35189 -18.18002 -17.25400 -17.14192 -16.89714 -16.78816 -16.02073 -16.00284 -15.75883 -15.52993 -15.13610 -14.81676 -14.58087 -14.50285 -14.27176 -14.08430 -13.77948 -13.43633 -13.25111 -13.18941 -12.87021 -12.84343 -12.75069 -12.62528 -12.50953 -12.38492 -12.28005 -11.90406 -11.83638 -11.62645 -11.52986 -11.48032 -11.15200 -11.09264 -10.41007 -10.27027 -9.91214 -9.40073 -9.23294 -8.68153 -6.36691 0.51819 1.00567 1.32336 1.45327 1.48666 2.19717 2.35596 2.43685 2.78479 2.83390 3.61490 3.71702 3.77759 3.87752 3.99800 4.11290 4.16962 4.28835 4.31201 4.36369 4.44058 4.52041 4.58483 4.68205 4.77150 4.82512 4.87116 4.90982 4.97101 5.01566 5.04553 5.08872 5.11575 5.13606 5.18013 5.24327 5.29233 5.33806 5.51187 5.58966 5.61160 5.71209 5.81964 6.05032 6.10178 6.29139 6.33537 6.63362 6.79013 6.91698 7.00196 7.67179 8.29296 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003710 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.922013 B = 7544.905344 C = 8586.289515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.144 4.144 4 C 0.091 3.909 5 H 0.054 0.946 6 C -0.147 4.147 7 C 0.143 3.857 8 H 0.065 0.935 9 N -0.723 5.723 10 C 0.562 3.438 11 O -0.576 6.576 12 C -0.280 4.280 13 C -0.055 4.055 14 C -0.236 4.236 15 C -0.092 4.092 16 C -0.177 4.177 17 C 0.116 3.884 18 C -0.456 4.456 19 H 0.081 0.919 20 C 0.032 3.968 21 N -0.823 5.823 22 Si 0.978 3.022 23 H -0.271 1.271 24 H -0.257 1.257 25 H -0.263 1.263 26 C -0.161 4.161 27 C 0.069 3.931 28 O -0.376 6.376 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.401 0.599 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.104 0.896 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 12.034 -10.610 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.201 4.201 4 C 0.034 3.966 5 H 0.071 0.929 6 C -0.185 4.185 7 C 0.038 3.962 8 H 0.083 0.917 9 N -0.377 5.377 10 C 0.355 3.645 11 O -0.458 6.458 12 C -0.285 4.285 13 C -0.073 4.073 14 C -0.255 4.255 15 C -0.111 4.111 16 C -0.197 4.197 17 C 0.112 3.888 18 C -0.485 4.485 19 H 0.099 0.901 20 C -0.183 4.183 21 N -0.450 5.450 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.181 1.181 25 H -0.187 1.187 26 C -0.200 4.200 27 C -0.007 4.007 28 O -0.295 6.295 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.122 0.878 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.816 12.310 -9.982 17.671 hybrid contribution 0.763 -0.621 0.752 1.238 sum -7.053 11.689 -9.230 16.479 Atomic orbital electron populations 1.21754 0.94416 1.01812 1.02033 1.21188 0.96723 0.97208 0.95219 1.21806 1.01068 0.95251 1.01954 1.22224 0.92173 0.95708 0.86529 0.92858 1.22512 0.96944 1.02607 0.96404 1.20916 0.99089 0.80338 0.95811 0.91700 1.45918 1.31834 1.07917 1.52036 1.18415 0.82117 0.85964 0.77973 1.90651 1.28413 1.81537 1.45153 1.19859 1.00023 0.92196 1.16460 1.21015 0.93792 0.96481 0.96024 1.20789 1.02610 0.93064 1.09005 1.21177 0.94265 0.99241 0.96386 1.21312 0.98798 0.95811 1.03769 1.17844 0.91498 0.91166 0.88285 1.20109 1.04701 1.15661 1.08067 0.90092 1.26773 1.02358 0.92484 0.96640 1.69740 1.37097 1.21924 1.16216 0.85270 0.77357 0.78785 0.78640 1.19664 1.18069 1.18736 1.22485 0.97666 1.01371 0.98434 1.22451 0.93028 0.97967 0.87290 1.87896 1.74491 1.53732 1.13357 0.92853 0.92998 0.91628 0.88776 0.92291 0.91832 0.92965 0.89422 0.88197 0.76210 0.85466 0.85015 0.86254 0.88213 0.90044 0.89200 0.93220 0.87753 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.05 71.98 0.65 -1.52 16 2 C -0.09 -1.32 2.81 -10.79 -0.03 -1.35 16 3 C -0.14 -2.12 8.70 71.98 0.63 -1.49 16 4 C 0.09 1.80 2.20 30.63 0.07 1.87 16 5 H 0.05 1.08 6.72 -2.39 -0.02 1.06 16 6 C -0.15 -3.05 4.78 30.68 0.15 -2.90 16 7 C 0.14 4.18 2.81 45.11 0.13 4.31 16 8 H 0.06 2.22 7.57 -2.38 -0.02 2.20 16 9 N -0.72 -24.38 4.36 -445.21 -1.94 -26.32 16 10 C 0.56 25.95 7.69 86.66 0.67 26.61 16 11 O -0.58 -31.17 13.26 -4.06 -0.05 -31.23 16 12 C -0.28 -13.65 5.92 -19.70 -0.12 -13.77 16 13 C -0.05 -2.17 9.52 22.50 0.21 -1.96 16 14 C -0.24 -9.16 10.03 22.41 0.22 -8.93 16 15 C -0.09 -3.99 10.01 22.26 0.22 -3.77 16 16 C -0.18 -9.19 8.62 22.72 0.20 -8.99 16 17 C 0.12 6.40 5.51 -21.11 -0.12 6.28 16 18 C -0.46 -26.43 7.67 23.41 0.18 -26.25 16 19 H 0.08 4.93 5.93 -2.91 -0.02 4.91 16 20 C 0.03 1.73 5.25 85.37 0.45 2.17 16 21 N -0.82 -44.39 11.13 21.88 0.24 -44.15 16 22 Si 0.98 42.06 29.57 68.60 2.03 44.09 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 C -0.16 -4.49 5.81 30.69 0.18 -4.31 16 27 C 0.07 1.70 6.68 72.01 0.48 2.18 16 28 O -0.38 -8.52 9.06 -148.98 -1.35 -9.87 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 0.83 6.38 -2.39 -0.02 0.81 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.05 0.90 7.68 -2.38 -0.02 0.88 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.85 6.31 -2.39 -0.02 1.83 16 38 H 0.40 11.46 5.14 -92.71 -0.48 10.98 16 39 H 0.13 3.95 6.44 -2.91 -0.02 3.93 16 40 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.10 5.40 6.58 -2.91 -0.02 5.38 16 43 H 0.29 14.06 8.29 -92.70 -0.77 13.29 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.04 1.10 7.75 -2.39 -0.02 1.08 16 Total: -1.00 -66.75 365.50 3.59 -63.16 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.50 Total: 36.16 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.17 Total: -31.83 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.70 Total: -70.47 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.40 Total: -41.10 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.75 3.59 -63.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601404349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.104 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds