Wall clock time and date at job start Tue Mar 31 2020 12:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47140 * 2 1 4 4 C 1.53003 * 109.47229 * 120.00034 * 2 1 3 5 5 H 1.08998 * 109.47962 * 300.02402 * 4 2 1 6 6 C 1.53091 * 109.47943 * 179.97438 * 4 2 1 7 7 C 1.53177 * 109.16196 * 182.40784 * 6 4 2 8 8 H 1.08997 * 109.54563 * 176.84421 * 7 6 4 9 9 N 1.46494 * 109.54707 * 297.11508 * 7 6 4 10 10 C 1.34776 * 120.00491 * 204.99786 * 9 7 6 11 11 O 1.21612 * 119.99514 * 0.02562 * 10 9 7 12 12 C 1.47430 * 120.00535 * 179.97438 * 10 9 7 13 13 C 1.39235 * 120.27867 * 355.35267 * 12 10 9 14 14 C 1.38219 * 120.08979 * 179.97438 * 13 12 10 15 15 C 1.38824 * 120.67801 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.56845 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.88243 * 359.68214 * 16 15 14 18 18 C 1.40892 * 120.32581 * 180.29982 * 17 16 15 19 19 H 1.08002 * 119.99366 * 215.85334 * 18 17 16 20 20 C 1.40264 * 120.00242 * 35.85229 * 18 17 16 21 21 N 1.30627 * 120.00127 * 8.96824 * 20 18 17 22 22 Si 1.86807 * 120.00116 * 188.97163 * 20 18 17 23 23 H 1.48495 * 109.47085 * 89.99495 * 22 20 18 24 24 H 1.48489 * 109.47375 * 209.99867 * 22 20 18 25 25 H 1.48503 * 109.46833 * 330.00360 * 22 20 18 26 26 C 1.53185 * 109.03422 * 56.98299 * 7 6 4 27 27 C 1.53092 * 109.16212 * 303.01533 * 26 7 6 28 28 O 1.42902 * 109.41140 * 57.61200 * 27 26 7 29 29 H 1.08998 * 109.47258 * 59.99963 * 1 2 3 30 30 H 1.09003 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47062 * 299.99751 * 1 2 3 32 32 H 1.09002 * 109.47011 * 239.99769 * 2 1 3 33 33 H 1.08997 * 109.46940 * 60.00175 * 3 2 1 34 34 H 1.08995 * 109.46974 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47075 * 300.00149 * 3 2 1 36 36 H 1.08997 * 109.52667 * 302.31338 * 6 4 2 37 37 H 1.08997 * 109.51997 * 62.50637 * 6 4 2 38 38 H 0.97005 * 120.00101 * 24.99546 * 9 7 6 39 39 H 1.07995 * 119.95397 * 0.02562 * 13 12 10 40 40 H 1.08002 * 119.66077 * 179.97438 * 14 13 12 41 41 H 1.08001 * 119.72001 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.05822 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.52357 * 62.92826 * 26 7 6 45 45 H 1.09004 * 109.52040 * 183.04761 * 26 7 6 46 46 H 1.08997 * 109.47982 * 177.59472 * 27 26 7 47 47 H 1.09004 * 109.48344 * 297.63039 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6764 -0.2078 2.1393 6 6 3.5709 -0.7219 1.2491 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5498 2.4469 9 7 3.6405 -0.8185 3.6945 10 6 4.3354 -0.9816 4.8377 11 8 5.3222 -1.6922 4.8532 12 6 3.8999 -0.2979 6.0691 13 6 2.8302 0.5928 6.0368 14 6 2.4248 1.2313 7.1937 15 6 3.0747 0.9957 8.3976 16 6 4.1350 0.1209 8.4610 17 6 4.5628 -0.5475 7.2991 18 6 5.6434 -1.4499 7.3546 19 1 6.3320 -1.5193 6.5255 20 6 5.8248 -2.2581 8.4866 21 7 4.9025 -2.3047 9.4105 22 14 7.3854 -3.2677 8.6731 23 1 8.4111 -2.4661 9.3876 24 1 7.0892 -4.4980 9.4499 25 1 7.8967 -3.6413 7.3298 26 6 3.4916 -2.9140 2.4373 27 6 1.9637 -2.8287 2.3916 28 8 1.5645 -2.0688 1.2490 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9350 -1.1995 0.3395 37 1 3.9356 0.3043 1.2938 38 1 2.8536 -0.2514 3.6820 39 1 2.3160 0.7844 5.1066 40 1 1.5945 1.9211 7.1606 41 1 2.7453 1.5033 9.2922 42 1 4.6349 -0.0559 9.4019 43 1 5.0279 -2.8639 10.1931 44 1 3.8540 -3.4359 1.5516 45 1 3.8005 -3.4559 3.3312 46 1 1.5454 -3.8329 2.3245 47 1 1.5995 -2.3427 3.2967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601404351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:24 Heat of formation + Delta-G solvation = -81.649287 kcal Electronic energy + Delta-G solvation = -27453.180053 eV Core-core repulsion = 23792.719754 eV Total energy + Delta-G solvation = -3660.460299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17996 -38.55281 -36.79991 -35.46590 -34.57796 -33.67433 -31.35558 -30.10585 -29.87445 -29.17283 -27.27213 -25.50954 -24.66474 -23.61931 -22.46210 -21.02984 -20.43836 -19.90038 -18.96442 -17.52752 -16.58507 -16.45134 -15.91043 -15.49807 -15.20579 -14.64018 -14.40915 -14.22688 -14.18709 -13.86940 -13.40432 -13.27160 -13.12287 -12.75942 -12.70764 -12.54594 -12.34539 -12.23206 -11.83973 -11.64192 -11.57786 -11.26063 -11.18845 -11.16326 -11.04274 -10.91466 -10.66283 -10.57809 -10.52561 -10.14692 -10.09891 -9.68790 -9.34580 -9.28181 -8.44265 -8.33275 -7.61326 -7.35340 -6.81050 -4.40998 2.33635 2.79280 3.09720 3.15977 3.23585 3.71951 3.92093 3.97592 4.14013 4.53606 4.67956 4.71560 4.91925 5.00120 5.06818 5.16456 5.21478 5.23951 5.46144 5.50398 5.59946 5.61847 5.66619 5.70975 5.76697 5.89018 5.93703 5.94606 5.98091 6.05133 6.06903 6.19244 6.24077 6.25131 6.28692 6.30350 6.60678 6.92682 7.07391 7.14422 7.23810 7.28370 7.44051 7.59734 7.86130 7.97460 8.16177 8.35880 8.66871 8.81916 8.89307 9.40658 10.15065 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003866 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.719442 B = 7241.273051 C = 8246.338135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.150 4.150 4 C 0.095 3.905 5 H 0.056 0.944 6 C -0.157 4.157 7 C 0.148 3.852 8 H 0.088 0.912 9 N -0.744 5.744 10 C 0.566 3.434 11 O -0.538 6.538 12 C -0.261 4.261 13 C -0.058 4.058 14 C -0.244 4.244 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.148 3.852 18 C -0.423 4.423 19 H 0.111 0.889 20 C 0.069 3.931 21 N -0.794 5.794 22 Si 0.915 3.085 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C -0.166 4.166 27 C 0.064 3.936 28 O -0.379 6.379 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.389 0.611 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.282 0.718 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 3.066 -13.646 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.207 4.207 4 C 0.037 3.963 5 H 0.074 0.926 6 C -0.195 4.195 7 C 0.043 3.957 8 H 0.106 0.894 9 N -0.399 5.399 10 C 0.360 3.640 11 O -0.416 6.416 12 C -0.266 4.266 13 C -0.077 4.077 14 C -0.263 4.263 15 C -0.115 4.115 16 C -0.165 4.165 17 C 0.144 3.856 18 C -0.451 4.451 19 H 0.128 0.872 20 C -0.149 4.149 21 N -0.419 5.419 22 Si 0.739 3.261 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.205 4.205 27 C -0.013 4.013 28 O -0.299 6.299 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.224 0.776 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.168 2.344 -13.557 14.697 hybrid contribution 0.234 -0.184 0.526 0.604 sum -4.934 2.160 -13.031 14.101 Atomic orbital electron populations 1.21769 0.94670 1.02387 1.01303 1.21090 0.96499 0.95611 0.97342 1.21892 1.01457 0.95193 1.02165 1.22095 0.92693 0.83566 0.97923 0.92630 1.22546 0.96550 1.01817 0.98635 1.20729 1.00096 0.90965 0.83921 0.89400 1.46149 1.32391 1.52151 1.09247 1.18412 0.82331 0.80532 0.82711 1.90651 1.26652 1.39749 1.84573 1.19474 1.03429 1.09335 0.94392 1.20628 0.95109 0.95792 0.96134 1.20281 1.04788 1.07731 0.93515 1.20798 0.96398 0.98232 0.96047 1.21346 0.98802 0.97296 0.99100 1.17478 0.89821 0.89146 0.89175 1.20312 1.08722 1.14885 1.01169 0.87167 1.26137 0.97365 0.97154 0.94225 1.69718 1.31980 1.32282 1.07956 0.86183 0.81431 0.78869 0.79624 1.19315 1.20359 1.18095 1.22560 0.96453 0.98134 1.03328 1.22527 0.94328 0.95951 0.88462 1.87867 1.74707 1.23066 1.44216 0.92972 0.91840 0.92843 0.90575 0.92336 0.92094 0.92256 0.90044 0.90115 0.77629 0.89503 0.89115 0.89076 0.86683 0.90749 0.90917 0.89959 0.89156 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.05 37.16 0.34 -1.00 16 2 C -0.09 -0.83 2.72 -90.62 -0.25 -1.08 16 3 C -0.15 -1.25 8.84 37.16 0.33 -0.92 16 4 C 0.10 1.09 2.05 -26.68 -0.05 1.04 16 5 H 0.06 0.67 6.71 -51.93 -0.35 0.32 16 6 C -0.16 -1.84 4.65 -26.59 -0.12 -1.96 16 7 C 0.15 2.22 2.82 -67.75 -0.19 2.03 16 8 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 9 N -0.74 -12.85 4.35 -54.70 -0.24 -13.09 16 10 C 0.57 12.77 7.69 -12.52 -0.10 12.67 16 11 O -0.54 -13.78 13.19 5.27 0.07 -13.71 16 12 C -0.26 -6.29 5.92 -104.37 -0.62 -6.91 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 14 C -0.24 -5.13 10.03 -39.37 -0.39 -5.52 16 15 C -0.10 -2.14 10.01 -39.60 -0.40 -2.54 16 16 C -0.15 -3.69 8.62 -38.88 -0.34 -4.02 16 17 C 0.15 3.93 5.48 -106.54 -0.58 3.35 16 18 C -0.42 -11.53 7.78 -37.82 -0.29 -11.83 16 19 H 0.11 3.12 5.73 -52.49 -0.30 2.82 16 20 C 0.07 1.78 5.25 -17.30 -0.09 1.68 16 21 N -0.79 -20.52 11.25 55.56 0.63 -19.90 16 22 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.17 -2.39 5.81 -26.59 -0.15 -2.55 16 27 C 0.06 0.86 6.68 37.20 0.25 1.10 16 28 O -0.38 -4.95 9.73 -35.23 -0.34 -5.29 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 6.49 -51.93 -0.34 0.16 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.89 6.57 -51.93 -0.34 0.55 16 38 H 0.39 6.02 5.12 -40.82 -0.21 5.81 16 39 H 0.09 1.52 6.42 -52.49 -0.34 1.18 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.12 2.97 6.72 -52.49 -0.35 2.61 16 43 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.77 7.75 -51.93 -0.40 0.37 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -29.00 366.79 -9.63 -38.63 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.21 Total: 11.31 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -3.04 Total: -18.03 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.39 Total: -32.99 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.27 Total: -19.00 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.00 -9.63 -38.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601404351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.023 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds