Wall clock time and date at job start Tue Mar 31 2020 12:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47140 * 2 1 4 4 C 1.53003 * 109.47229 * 120.00034 * 2 1 3 5 5 H 1.08998 * 109.47962 * 300.02402 * 4 2 1 6 6 C 1.53091 * 109.47943 * 179.97438 * 4 2 1 7 7 C 1.53177 * 109.16196 * 182.40784 * 6 4 2 8 8 H 1.08997 * 109.54563 * 176.84421 * 7 6 4 9 9 N 1.46494 * 109.54707 * 297.11508 * 7 6 4 10 10 C 1.34776 * 120.00491 * 204.99786 * 9 7 6 11 11 O 1.21612 * 119.99514 * 0.02562 * 10 9 7 12 12 C 1.47430 * 120.00535 * 179.97438 * 10 9 7 13 13 C 1.39235 * 120.27867 * 355.35267 * 12 10 9 14 14 C 1.38219 * 120.08979 * 179.97438 * 13 12 10 15 15 C 1.38824 * 120.67801 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.56845 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.88243 * 359.68214 * 16 15 14 18 18 C 1.40892 * 120.32581 * 180.29982 * 17 16 15 19 19 H 1.08002 * 119.99366 * 215.85334 * 18 17 16 20 20 C 1.40264 * 120.00242 * 35.85229 * 18 17 16 21 21 N 1.30627 * 120.00127 * 8.96824 * 20 18 17 22 22 Si 1.86807 * 120.00116 * 188.97163 * 20 18 17 23 23 H 1.48495 * 109.47085 * 89.99495 * 22 20 18 24 24 H 1.48489 * 109.47375 * 209.99867 * 22 20 18 25 25 H 1.48503 * 109.46833 * 330.00360 * 22 20 18 26 26 C 1.53185 * 109.03422 * 56.98299 * 7 6 4 27 27 C 1.53092 * 109.16212 * 303.01533 * 26 7 6 28 28 O 1.42902 * 109.41140 * 57.61200 * 27 26 7 29 29 H 1.08998 * 109.47258 * 59.99963 * 1 2 3 30 30 H 1.09003 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47062 * 299.99751 * 1 2 3 32 32 H 1.09002 * 109.47011 * 239.99769 * 2 1 3 33 33 H 1.08997 * 109.46940 * 60.00175 * 3 2 1 34 34 H 1.08995 * 109.46974 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47075 * 300.00149 * 3 2 1 36 36 H 1.08997 * 109.52667 * 302.31338 * 6 4 2 37 37 H 1.08997 * 109.51997 * 62.50637 * 6 4 2 38 38 H 0.97005 * 120.00101 * 24.99546 * 9 7 6 39 39 H 1.07995 * 119.95397 * 0.02562 * 13 12 10 40 40 H 1.08002 * 119.66077 * 179.97438 * 14 13 12 41 41 H 1.08001 * 119.72001 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.05822 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.52357 * 62.92826 * 26 7 6 45 45 H 1.09004 * 109.52040 * 183.04761 * 26 7 6 46 46 H 1.08997 * 109.47982 * 177.59472 * 27 26 7 47 47 H 1.09004 * 109.48344 * 297.63039 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6764 -0.2078 2.1393 6 6 3.5709 -0.7219 1.2491 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5498 2.4469 9 7 3.6405 -0.8185 3.6945 10 6 4.3354 -0.9816 4.8377 11 8 5.3222 -1.6922 4.8532 12 6 3.8999 -0.2979 6.0691 13 6 2.8302 0.5928 6.0368 14 6 2.4248 1.2313 7.1937 15 6 3.0747 0.9957 8.3976 16 6 4.1350 0.1209 8.4610 17 6 4.5628 -0.5475 7.2991 18 6 5.6434 -1.4499 7.3546 19 1 6.3320 -1.5193 6.5255 20 6 5.8248 -2.2581 8.4866 21 7 4.9025 -2.3047 9.4105 22 14 7.3854 -3.2677 8.6731 23 1 8.4111 -2.4661 9.3876 24 1 7.0892 -4.4980 9.4499 25 1 7.8967 -3.6413 7.3298 26 6 3.4916 -2.9140 2.4373 27 6 1.9637 -2.8287 2.3916 28 8 1.5645 -2.0688 1.2490 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9350 -1.1995 0.3395 37 1 3.9356 0.3043 1.2938 38 1 2.8536 -0.2514 3.6820 39 1 2.3160 0.7844 5.1066 40 1 1.5945 1.9211 7.1606 41 1 2.7453 1.5033 9.2922 42 1 4.6349 -0.0559 9.4019 43 1 5.0279 -2.8639 10.1931 44 1 3.8540 -3.4359 1.5516 45 1 3.8005 -3.4559 3.3312 46 1 1.5454 -3.8329 2.3245 47 1 1.5995 -2.3427 3.2967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601404351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:23 Heat of formation + Delta-G solvation = -97.415401 kcal Electronic energy + Delta-G solvation = -27453.863723 eV Core-core repulsion = 23792.719754 eV Total energy + Delta-G solvation = -3661.143969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44297 -40.10835 -38.51581 -36.40082 -35.98094 -35.47215 -32.88537 -31.71440 -31.13392 -30.79819 -27.98196 -27.32678 -25.81078 -24.65187 -24.14607 -22.81260 -21.51742 -21.22631 -20.36613 -19.34779 -18.13496 -17.46718 -17.14793 -17.03157 -16.83794 -15.99755 -15.91219 -15.74583 -15.28723 -15.05846 -14.96086 -14.59663 -14.50349 -14.21792 -14.04328 -13.75665 -13.50905 -13.42731 -13.16510 -12.90708 -12.87594 -12.85136 -12.56614 -12.43956 -12.33030 -12.19621 -12.02556 -11.92796 -11.72725 -11.54086 -11.48711 -11.14294 -11.10078 -10.43603 -10.22544 -9.92452 -9.40682 -9.21689 -8.68279 -6.37798 0.51062 1.00400 1.32558 1.44348 1.49880 2.20529 2.34257 2.44186 2.77005 2.79495 3.60293 3.70272 3.76408 3.88335 3.99054 4.11348 4.15183 4.30103 4.34240 4.36335 4.40972 4.42071 4.57441 4.66830 4.78826 4.81014 4.84485 4.87703 4.93441 5.01427 5.03412 5.07288 5.07558 5.11544 5.16365 5.24494 5.30208 5.33429 5.47849 5.51273 5.60955 5.70272 5.81247 6.04902 6.10817 6.27318 6.34217 6.64116 6.79570 6.91840 7.00768 7.67466 8.29946 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003866 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.719442 B = 7241.273051 C = 8246.338135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.148 4.148 4 C 0.091 3.909 5 H 0.053 0.947 6 C -0.146 4.146 7 C 0.143 3.857 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.562 3.438 11 O -0.577 6.577 12 C -0.279 4.279 13 C -0.055 4.055 14 C -0.234 4.234 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.118 3.882 18 C -0.464 4.464 19 H 0.087 0.913 20 C 0.033 3.967 21 N -0.824 5.824 22 Si 0.976 3.024 23 H -0.255 1.255 24 H -0.263 1.263 25 H -0.273 1.273 26 C -0.162 4.162 27 C 0.070 3.930 28 O -0.381 6.381 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.400 0.600 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.288 0.712 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 4.484 -15.422 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.206 4.206 4 C 0.034 3.966 5 H 0.071 0.929 6 C -0.184 4.184 7 C 0.038 3.962 8 H 0.085 0.915 9 N -0.377 5.377 10 C 0.356 3.644 11 O -0.458 6.458 12 C -0.284 4.284 13 C -0.073 4.073 14 C -0.253 4.253 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.114 3.886 18 C -0.493 4.493 19 H 0.104 0.896 20 C -0.182 4.182 21 N -0.451 5.451 22 Si 0.798 3.202 23 H -0.179 1.179 24 H -0.188 1.188 25 H -0.197 1.197 26 C -0.201 4.201 27 C -0.007 4.007 28 O -0.301 6.301 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.048 3.791 -15.357 17.317 hybrid contribution 0.646 -0.493 0.946 1.247 sum -6.402 3.298 -14.411 16.110 Atomic orbital electron populations 1.21757 0.94401 1.01825 1.02025 1.21090 0.96687 0.96143 0.96200 1.21893 1.01567 0.94260 1.02840 1.22264 0.92320 0.83010 0.99039 0.92930 1.22502 0.96792 1.01982 0.97086 1.20913 0.99163 0.91895 0.84189 0.91482 1.45896 1.31736 1.51480 1.08580 1.18407 0.82206 0.80073 0.83751 1.90633 1.28483 1.41331 1.85359 1.19871 1.04196 1.10027 0.94341 1.21028 0.93880 0.94240 0.98196 1.20796 1.04864 1.07091 0.92536 1.21177 0.95018 0.96862 0.98019 1.21286 1.00723 0.99247 0.98238 1.17845 0.90399 0.89528 0.90819 1.20253 1.10056 1.17276 1.01701 0.89551 1.26785 1.00021 0.97739 0.93657 1.69743 1.33248 1.33500 1.08592 0.85286 0.78105 0.78017 0.78799 1.17912 1.18775 1.19747 1.22500 0.97542 0.97449 1.02588 1.22451 0.93173 0.96828 0.88259 1.87885 1.74690 1.23781 1.43697 0.91498 0.93030 0.92927 0.90253 0.92387 0.91919 0.90930 0.88515 0.88945 0.76249 0.85422 0.84945 0.86221 0.88474 0.90093 0.89124 0.93199 0.87712 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.05 71.98 0.65 -1.59 16 2 C -0.08 -1.32 2.72 -10.79 -0.03 -1.35 16 3 C -0.15 -1.96 8.84 71.98 0.64 -1.32 16 4 C 0.09 1.86 2.05 30.63 0.06 1.92 16 5 H 0.05 1.11 6.71 -2.39 -0.02 1.09 16 6 C -0.15 -3.06 4.65 30.68 0.14 -2.92 16 7 C 0.14 4.22 2.82 45.11 0.13 4.34 16 8 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 9 N -0.72 -24.55 4.35 -445.23 -1.94 -26.49 16 10 C 0.56 25.99 7.69 86.66 0.67 26.66 16 11 O -0.58 -31.18 13.19 -4.07 -0.05 -31.23 16 12 C -0.28 -13.59 5.92 -19.70 -0.12 -13.71 16 13 C -0.05 -2.18 9.52 22.51 0.21 -1.97 16 14 C -0.23 -9.05 10.03 22.41 0.22 -8.83 16 15 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 16 C -0.18 -9.07 8.62 22.72 0.20 -8.88 16 17 C 0.12 6.50 5.48 -21.11 -0.12 6.39 16 18 C -0.46 -26.87 7.78 23.41 0.18 -26.69 16 19 H 0.09 5.28 5.73 -2.91 -0.02 5.27 16 20 C 0.03 1.75 5.25 85.36 0.45 2.20 16 21 N -0.82 -44.38 11.25 21.88 0.25 -44.13 16 22 Si 0.98 42.03 29.57 68.60 2.03 44.06 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C -0.16 -4.63 5.81 30.69 0.18 -4.46 16 27 C 0.07 1.78 6.68 72.01 0.48 2.26 16 28 O -0.38 -9.10 9.73 -148.98 -1.45 -10.55 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.93 7.68 -2.39 -0.02 0.91 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.81 6.49 -2.39 -0.02 0.80 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.77 6.57 -2.39 -0.02 1.75 16 38 H 0.40 11.59 5.12 -92.70 -0.47 11.12 16 39 H 0.13 3.95 6.42 -2.91 -0.02 3.93 16 40 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.10 5.25 6.72 -2.91 -0.02 5.23 16 43 H 0.29 14.04 8.29 -92.70 -0.77 13.27 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.04 1.13 7.75 -2.38 -0.02 1.12 16 Total: -1.00 -66.85 366.79 3.51 -63.35 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: 0.50 Total: 36.70 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.17 Total: -31.70 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.69 Total: -70.62 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.50 Total: -41.78 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -66.85 3.51 -63.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601404351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.066 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds