Wall clock time and date at job start Tue Mar 31 2020 12:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 C 1.53003 * 109.47209 * 120.00208 * 2 1 3 5 5 H 1.08995 * 109.46550 * 300.00120 * 4 2 1 6 6 O 1.42895 * 109.46804 * 60.00045 * 4 2 1 7 7 C 1.52999 * 109.47109 * 180.02562 * 4 2 1 8 8 C 1.53002 * 115.54910 * 325.58299 * 7 4 2 9 9 N 1.46505 * 109.47190 * 180.02562 * 8 7 4 10 10 C 1.34767 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21613 * 120.00461 * 359.97438 * 10 9 8 12 12 C 1.47431 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.39221 * 120.28534 * 355.34804 * 12 10 9 14 14 C 1.38225 * 120.09688 * 179.97438 * 13 12 10 15 15 C 1.38821 * 120.67323 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.57407 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.87447 * 359.68116 * 16 15 14 18 18 C 1.40888 * 120.32414 * 180.29860 * 17 16 15 19 19 H 1.08000 * 120.00204 * 215.85002 * 18 17 16 20 20 C 1.40272 * 120.00374 * 35.84834 * 18 17 16 21 21 N 1.30636 * 119.99594 * 8.98028 * 20 18 17 22 22 Si 1.86798 * 120.00307 * 188.97543 * 20 18 17 23 23 H 1.48502 * 109.47245 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47076 * 120.00490 * 22 20 18 25 25 H 1.48500 * 109.47284 * 240.00055 * 22 20 18 26 26 C 1.52995 * 117.50100 * 111.25416 * 7 4 2 27 27 C 1.52996 * 117.49661 * 179.91193 * 7 4 2 28 28 H 1.08995 * 109.47462 * 300.00231 * 1 2 3 29 29 H 1.09003 * 109.47149 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47160 * 240.00349 * 2 1 3 32 32 H 1.09003 * 109.46846 * 60.00156 * 3 2 1 33 33 H 1.08999 * 109.46936 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47207 * 300.00052 * 3 2 1 35 35 H 0.96691 * 114.00089 * 60.00462 * 6 4 2 36 36 H 1.09010 * 109.47079 * 299.99883 * 8 7 4 37 37 H 1.08992 * 109.47502 * 60.00093 * 8 7 4 38 38 H 0.97002 * 119.99607 * 359.97438 * 9 8 7 39 39 H 1.08003 * 119.95061 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.66420 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.71455 * 179.97438 * 15 14 13 42 42 H 1.07994 * 120.06202 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99688 * 179.97438 * 21 20 18 44 44 H 1.09005 * 117.49775 * 215.00200 * 26 7 4 45 45 H 1.09002 * 117.49666 * 0.02562 * 26 7 4 46 46 H 1.09002 * 117.50372 * 359.97438 * 27 7 4 47 47 H 1.09007 * 117.49793 * 144.99319 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1391 6 8 1.5636 -2.0685 1.2491 7 6 3.5700 -0.7207 1.2495 8 6 4.2301 -0.8265 -0.1267 9 7 5.6869 -0.8147 0.0283 10 6 6.4808 -0.8987 -1.0575 11 8 5.9880 -0.9848 -2.1660 12 6 7.9468 -0.8862 -0.9015 13 6 8.5177 -0.6909 0.3531 14 6 9.8926 -0.6805 0.4949 15 6 10.7195 -0.8629 -0.6052 16 6 10.1847 -1.0582 -1.8579 17 6 8.7882 -1.0804 -2.0282 18 6 8.2305 -1.2859 -3.3055 19 1 7.3226 -0.7732 -3.5873 20 6 8.8543 -2.1564 -4.2115 21 7 9.8470 -2.9083 -3.8168 22 14 8.2655 -2.2406 -5.9823 23 1 7.1353 -1.2966 -6.1736 24 1 9.3793 -1.8712 -6.8924 25 1 7.8135 -3.6216 -6.2885 26 6 4.2759 0.1287 2.3082 27 6 4.2764 -1.3974 2.4259 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.8490 -2.5865 0.4841 36 1 3.9237 -1.7563 -0.6062 37 1 3.9231 0.0184 -0.7429 38 1 6.0800 -0.7464 0.9125 39 1 7.8854 -0.5482 1.2170 40 1 10.3281 -0.5280 1.4714 41 1 11.7917 -0.8515 -0.4767 42 1 10.8357 -1.1989 -2.7081 43 1 10.2781 -3.5105 -4.4432 44 1 5.2107 0.6122 2.0243 45 1 3.6503 0.6868 3.0049 46 1 3.6512 -1.8427 3.1999 47 1 5.2115 -1.9182 2.2194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601409072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:08 Heat of formation + Delta-G solvation = -52.121680 kcal Electronic energy + Delta-G solvation = -27096.444006 eV Core-core repulsion = 23437.264120 eV Total energy + Delta-G solvation = -3659.179886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.13825 -38.62528 -36.85843 -36.09174 -34.29892 -33.82252 -32.92533 -30.07972 -29.63699 -27.93594 -26.79208 -25.99843 -25.07746 -22.47601 -22.15761 -20.94828 -20.87261 -19.56076 -19.32078 -17.57311 -16.81928 -16.36276 -16.02271 -15.26010 -15.14017 -14.91030 -14.71187 -14.30538 -14.12547 -13.78888 -13.36943 -13.12980 -13.08025 -12.82648 -12.71906 -12.44513 -12.27295 -12.13548 -12.07808 -11.59734 -11.55482 -11.37782 -11.15419 -11.09601 -11.01404 -10.71346 -10.66489 -10.57351 -10.50114 -10.11368 -10.00407 -9.75039 -9.67895 -9.28650 -8.40421 -8.34640 -7.61043 -7.35224 -6.80981 -4.40690 2.33638 2.78548 3.10207 3.19261 3.21229 3.54839 3.90241 3.97792 4.15402 4.25072 4.39628 4.64458 4.68066 4.71463 4.81457 4.88009 5.03655 5.18879 5.47391 5.50785 5.52833 5.57404 5.59980 5.72842 5.79187 5.81229 5.86501 5.92995 5.94900 5.95704 6.03093 6.06295 6.16596 6.19312 6.26487 6.29710 6.59684 6.92677 7.06187 7.13550 7.23050 7.44094 7.50997 7.59717 7.86138 7.97493 8.16306 8.34924 8.67092 8.82082 8.89468 9.39668 10.15191 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.003836 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.652451 B = 7297.548174 C = 8682.947658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C -0.150 4.150 4 C 0.156 3.844 5 H 0.098 0.902 6 O -0.558 6.558 7 C -0.172 4.172 8 C 0.158 3.842 9 N -0.750 5.750 10 C 0.565 3.435 11 O -0.539 6.539 12 C -0.261 4.261 13 C -0.058 4.058 14 C -0.244 4.244 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.148 3.852 18 C -0.422 4.422 19 H 0.111 0.889 20 C 0.069 3.931 21 N -0.794 5.794 22 Si 0.915 3.085 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.169 4.169 27 C -0.163 4.163 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.377 0.623 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.391 0.609 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.281 0.719 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 4.273 8.778 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.207 4.207 4 C 0.097 3.903 5 H 0.116 0.884 6 O -0.363 6.363 7 C -0.173 4.173 8 C 0.033 3.967 9 N -0.406 5.406 10 C 0.359 3.641 11 O -0.418 6.418 12 C -0.266 4.266 13 C -0.077 4.077 14 C -0.263 4.263 15 C -0.115 4.115 16 C -0.165 4.165 17 C 0.144 3.856 18 C -0.450 4.450 19 H 0.129 0.871 20 C -0.149 4.149 21 N -0.419 5.419 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.206 4.206 27 C -0.200 4.200 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.228 0.772 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.164 4.218 8.425 15.386 hybrid contribution 0.430 -0.359 -0.700 0.896 sum -11.734 3.859 7.725 14.569 Atomic orbital electron populations 1.21752 0.94635 1.02133 1.01398 1.21843 0.96525 0.97542 0.98918 1.21885 1.02129 0.95025 1.01657 1.21394 0.88079 0.82795 0.98071 0.88394 1.86528 1.76421 1.23457 1.49923 1.22512 0.95568 1.07340 0.91885 1.20687 0.80917 1.01770 0.93276 1.46132 1.05341 1.79097 1.10071 1.18399 0.87164 0.75369 0.83191 1.90652 1.76361 1.50027 1.24729 1.19462 0.90747 1.22300 0.94102 1.20624 0.94562 0.97845 0.94635 1.20285 0.93245 1.15486 0.97320 1.20800 0.97497 0.99577 0.93597 1.21346 0.95348 1.03855 0.95999 1.17485 0.90744 0.85818 0.91598 1.20346 1.08706 1.20027 0.95969 0.87129 1.26148 0.93363 0.94333 1.01083 1.69730 1.18246 1.17175 1.36765 0.86125 0.79767 0.79171 0.80954 1.17995 1.19871 1.19948 1.23093 1.02637 0.93978 1.00926 1.23008 1.02405 0.94960 0.99582 0.92961 0.92803 0.92122 0.90316 0.92812 0.91436 0.92537 0.77577 0.92116 0.90885 0.77231 0.89500 0.89083 0.89057 0.86660 0.90794 0.88238 0.88568 0.88280 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.05 37.15 0.34 -0.92 16 2 C -0.13 -1.26 2.14 -90.62 -0.19 -1.45 16 3 C -0.15 -1.45 8.60 37.16 0.32 -1.14 16 4 C 0.16 1.56 2.66 -26.73 -0.07 1.49 16 5 H 0.10 0.95 7.90 -51.93 -0.41 0.54 16 6 O -0.56 -5.93 12.58 -35.23 -0.44 -6.38 16 7 C -0.17 -1.91 1.22 -154.51 -0.19 -2.09 16 8 C 0.16 2.28 4.46 -4.04 -0.02 2.27 16 9 N -0.75 -12.94 4.94 -61.38 -0.30 -13.25 16 10 C 0.56 12.86 7.72 -12.52 -0.10 12.77 16 11 O -0.54 -13.93 13.53 5.27 0.07 -13.86 16 12 C -0.26 -6.32 5.92 -104.37 -0.62 -6.94 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 14 C -0.24 -5.14 10.03 -39.37 -0.39 -5.53 16 15 C -0.10 -2.15 10.01 -39.60 -0.40 -2.54 16 16 C -0.15 -3.70 8.62 -38.88 -0.34 -4.03 16 17 C 0.15 3.94 5.48 -106.54 -0.58 3.36 16 18 C -0.42 -11.56 7.78 -37.82 -0.29 -11.86 16 19 H 0.11 3.15 5.73 -52.49 -0.30 2.85 16 20 C 0.07 1.77 5.25 -17.30 -0.09 1.67 16 21 N -0.79 -20.55 11.25 55.56 0.63 -19.93 16 22 Si 0.92 19.61 29.57 -169.99 -5.03 14.58 16 23 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 26 C -0.17 -1.73 9.40 -26.70 -0.25 -1.98 16 27 C -0.16 -1.76 9.38 -26.70 -0.25 -2.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 31 H 0.08 0.84 6.97 -51.93 -0.36 0.48 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.75 5.63 -51.93 -0.29 0.45 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.38 3.31 9.04 45.56 0.41 3.72 16 36 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.07 1.10 5.32 -51.93 -0.28 0.83 16 38 H 0.39 5.99 3.63 -40.82 -0.15 5.85 16 39 H 0.09 1.52 6.42 -52.48 -0.34 1.18 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.12 2.97 6.72 -52.49 -0.35 2.62 16 43 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 44 H 0.10 1.09 7.01 -51.93 -0.36 0.73 16 45 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.10 1.17 7.01 -51.92 -0.36 0.81 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -29.65 370.80 -9.12 -38.77 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -6.13 Total: 15.01 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -3.50 Total: -20.54 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.32 Total: -33.17 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.37 Total: -20.24 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.65 -9.12 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.356 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds