Wall clock time and date at job start Tue Mar 31 2020 12:25:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53007 * 109.47067 * 2 1
4 4 C 1.53003 * 109.47209 * 120.00208 * 2 1 3
5 5 H 1.08995 * 109.46550 * 300.00120 * 4 2 1
6 6 O 1.42895 * 109.46804 * 60.00045 * 4 2 1
7 7 C 1.52999 * 109.47109 * 180.02562 * 4 2 1
8 8 C 1.53002 * 115.54910 * 325.58299 * 7 4 2
9 9 N 1.46505 * 109.47190 * 180.02562 * 8 7 4
10 10 C 1.34767 * 119.99982 * 179.97438 * 9 8 7
11 11 O 1.21613 * 120.00461 * 359.97438 * 10 9 8
12 12 C 1.47431 * 119.99847 * 179.97438 * 10 9 8
13 13 C 1.39221 * 120.28534 * 355.34804 * 12 10 9
14 14 C 1.38225 * 120.09688 * 179.97438 * 13 12 10
15 15 C 1.38821 * 120.67323 * 0.02562 * 14 13 12
16 16 C 1.37601 * 120.57407 * 359.97438 * 15 14 13
17 17 C 1.40709 * 119.87447 * 359.68116 * 16 15 14
18 18 C 1.40888 * 120.32414 * 180.29860 * 17 16 15
19 19 H 1.08000 * 120.00204 * 215.85002 * 18 17 16
20 20 C 1.40272 * 120.00374 * 35.84834 * 18 17 16
21 21 N 1.30636 * 119.99594 * 8.98028 * 20 18 17
22 22 Si 1.86798 * 120.00307 * 188.97543 * 20 18 17
23 23 H 1.48502 * 109.47245 * 359.97438 * 22 20 18
24 24 H 1.48504 * 109.47076 * 120.00490 * 22 20 18
25 25 H 1.48500 * 109.47284 * 240.00055 * 22 20 18
26 26 C 1.52995 * 117.50100 * 111.25416 * 7 4 2
27 27 C 1.52996 * 117.49661 * 179.91193 * 7 4 2
28 28 H 1.08995 * 109.47462 * 300.00231 * 1 2 3
29 29 H 1.09003 * 109.47149 * 59.99913 * 1 2 3
30 30 H 1.09004 * 109.47082 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47160 * 240.00349 * 2 1 3
32 32 H 1.09003 * 109.46846 * 60.00156 * 3 2 1
33 33 H 1.08999 * 109.46936 * 179.97438 * 3 2 1
34 34 H 1.09003 * 109.47207 * 300.00052 * 3 2 1
35 35 H 0.96691 * 114.00089 * 60.00462 * 6 4 2
36 36 H 1.09010 * 109.47079 * 299.99883 * 8 7 4
37 37 H 1.08992 * 109.47502 * 60.00093 * 8 7 4
38 38 H 0.97002 * 119.99607 * 359.97438 * 9 8 7
39 39 H 1.08003 * 119.95061 * 0.02562 * 13 12 10
40 40 H 1.08000 * 119.66420 * 179.97438 * 14 13 12
41 41 H 1.08000 * 119.71455 * 179.97438 * 15 14 13
42 42 H 1.07994 * 120.06202 * 179.97438 * 16 15 14
43 43 H 0.97005 * 119.99688 * 179.97438 * 21 20 18
44 44 H 1.09005 * 117.49775 * 215.00200 * 26 7 4
45 45 H 1.09002 * 117.49666 * 0.02562 * 26 7 4
46 46 H 1.09002 * 117.50372 * 359.97438 * 27 7 4
47 47 H 1.09007 * 117.49793 * 144.99319 * 27 7 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6766 -0.2075 2.1391
6 8 1.5636 -2.0685 1.2491
7 6 3.5700 -0.7207 1.2495
8 6 4.2301 -0.8265 -0.1267
9 7 5.6869 -0.8147 0.0283
10 6 6.4808 -0.8987 -1.0575
11 8 5.9880 -0.9848 -2.1660
12 6 7.9468 -0.8862 -0.9015
13 6 8.5177 -0.6909 0.3531
14 6 9.8926 -0.6805 0.4949
15 6 10.7195 -0.8629 -0.6052
16 6 10.1847 -1.0582 -1.8579
17 6 8.7882 -1.0804 -2.0282
18 6 8.2305 -1.2859 -3.3055
19 1 7.3226 -0.7732 -3.5873
20 6 8.8543 -2.1564 -4.2115
21 7 9.8470 -2.9083 -3.8168
22 14 8.2655 -2.2406 -5.9823
23 1 7.1353 -1.2966 -6.1736
24 1 9.3793 -1.8712 -6.8924
25 1 7.8135 -3.6216 -6.2885
26 6 4.2759 0.1287 2.3082
27 6 4.2764 -1.3974 2.4259
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.6766 1.9564 0.8900
33 1 3.1299 1.4425 0.0005
34 1 1.6766 1.9564 -0.8900
35 1 1.8490 -2.5865 0.4841
36 1 3.9237 -1.7563 -0.6062
37 1 3.9231 0.0184 -0.7429
38 1 6.0800 -0.7464 0.9125
39 1 7.8854 -0.5482 1.2170
40 1 10.3281 -0.5280 1.4714
41 1 11.7917 -0.8515 -0.4767
42 1 10.8357 -1.1989 -2.7081
43 1 10.2781 -3.5105 -4.4432
44 1 5.2107 0.6122 2.0243
45 1 3.6503 0.6868 3.0049
46 1 3.6512 -1.8427 3.1999
47 1 5.2115 -1.9182 2.2194
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601409072.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:25:08
Heat of formation + Delta-G solvation = -52.121680 kcal
Electronic energy + Delta-G solvation = -27096.444006 eV
Core-core repulsion = 23437.264120 eV
Total energy + Delta-G solvation = -3659.179886 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.13825 -38.62528 -36.85843 -36.09174 -34.29892 -33.82252 -32.92533 -30.07972
-29.63699 -27.93594 -26.79208 -25.99843 -25.07746 -22.47601 -22.15761 -20.94828
-20.87261 -19.56076 -19.32078 -17.57311 -16.81928 -16.36276 -16.02271 -15.26010
-15.14017 -14.91030 -14.71187 -14.30538 -14.12547 -13.78888 -13.36943 -13.12980
-13.08025 -12.82648 -12.71906 -12.44513 -12.27295 -12.13548 -12.07808 -11.59734
-11.55482 -11.37782 -11.15419 -11.09601 -11.01404 -10.71346 -10.66489 -10.57351
-10.50114 -10.11368 -10.00407 -9.75039 -9.67895 -9.28650 -8.40421 -8.34640
-7.61043 -7.35224 -6.80981 -4.40690 2.33638 2.78548 3.10207 3.19261
3.21229 3.54839 3.90241 3.97792 4.15402 4.25072 4.39628 4.64458
4.68066 4.71463 4.81457 4.88009 5.03655 5.18879 5.47391 5.50785
5.52833 5.57404 5.59980 5.72842 5.79187 5.81229 5.86501 5.92995
5.94900 5.95704 6.03093 6.06295 6.16596 6.19312 6.26487 6.29710
6.59684 6.92677 7.06187 7.13550 7.23050 7.44094 7.50997 7.59717
7.86138 7.97493 8.16306 8.34924 8.67092 8.82082 8.89468 9.39668
10.15191
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.013992 B = 0.003836 C = 0.003224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2000.652451 B = 7297.548174 C = 8682.947658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.130 4.130
3 C -0.150 4.150
4 C 0.156 3.844
5 H 0.098 0.902
6 O -0.558 6.558
7 C -0.172 4.172
8 C 0.158 3.842
9 N -0.750 5.750
10 C 0.565 3.435
11 O -0.539 6.539
12 C -0.261 4.261
13 C -0.058 4.058
14 C -0.244 4.244
15 C -0.096 4.096
16 C -0.146 4.146
17 C 0.148 3.852
18 C -0.422 4.422
19 H 0.111 0.889
20 C 0.069 3.931
21 N -0.794 5.794
22 Si 0.915 3.085
23 H -0.257 1.257
24 H -0.273 1.273
25 H -0.274 1.274
26 C -0.169 4.169
27 C -0.163 4.163
28 H 0.051 0.949
29 H 0.053 0.947
30 H 0.060 0.940
31 H 0.079 0.921
32 H 0.053 0.947
33 H 0.067 0.933
34 H 0.056 0.944
35 H 0.377 0.623
36 H 0.061 0.939
37 H 0.073 0.927
38 H 0.391 0.609
39 H 0.087 0.913
40 H 0.091 0.909
41 H 0.091 0.909
42 H 0.115 0.885
43 H 0.281 0.719
44 H 0.099 0.901
45 H 0.096 0.904
46 H 0.099 0.901
47 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.674 4.273 8.778 15.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.148 4.148
3 C -0.207 4.207
4 C 0.097 3.903
5 H 0.116 0.884
6 O -0.363 6.363
7 C -0.173 4.173
8 C 0.033 3.967
9 N -0.406 5.406
10 C 0.359 3.641
11 O -0.418 6.418
12 C -0.266 4.266
13 C -0.077 4.077
14 C -0.263 4.263
15 C -0.115 4.115
16 C -0.165 4.165
17 C 0.144 3.856
18 C -0.450 4.450
19 H 0.129 0.871
20 C -0.149 4.149
21 N -0.419 5.419
22 Si 0.740 3.260
23 H -0.180 1.180
24 H -0.199 1.199
25 H -0.199 1.199
26 C -0.206 4.206
27 C -0.200 4.200
28 H 0.070 0.930
29 H 0.072 0.928
30 H 0.079 0.921
31 H 0.097 0.903
32 H 0.072 0.928
33 H 0.086 0.914
34 H 0.075 0.925
35 H 0.224 0.776
36 H 0.079 0.921
37 H 0.091 0.909
38 H 0.228 0.772
39 H 0.105 0.895
40 H 0.109 0.891
41 H 0.109 0.891
42 H 0.133 0.867
43 H 0.092 0.908
44 H 0.118 0.882
45 H 0.114 0.886
46 H 0.117 0.883
47 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -12.164 4.218 8.425 15.386
hybrid contribution 0.430 -0.359 -0.700 0.896
sum -11.734 3.859 7.725 14.569
Atomic orbital electron populations
1.21752 0.94635 1.02133 1.01398 1.21843 0.96525 0.97542 0.98918
1.21885 1.02129 0.95025 1.01657 1.21394 0.88079 0.82795 0.98071
0.88394 1.86528 1.76421 1.23457 1.49923 1.22512 0.95568 1.07340
0.91885 1.20687 0.80917 1.01770 0.93276 1.46132 1.05341 1.79097
1.10071 1.18399 0.87164 0.75369 0.83191 1.90652 1.76361 1.50027
1.24729 1.19462 0.90747 1.22300 0.94102 1.20624 0.94562 0.97845
0.94635 1.20285 0.93245 1.15486 0.97320 1.20800 0.97497 0.99577
0.93597 1.21346 0.95348 1.03855 0.95999 1.17485 0.90744 0.85818
0.91598 1.20346 1.08706 1.20027 0.95969 0.87129 1.26148 0.93363
0.94333 1.01083 1.69730 1.18246 1.17175 1.36765 0.86125 0.79767
0.79171 0.80954 1.17995 1.19871 1.19948 1.23093 1.02637 0.93978
1.00926 1.23008 1.02405 0.94960 0.99582 0.92961 0.92803 0.92122
0.90316 0.92812 0.91436 0.92537 0.77577 0.92116 0.90885 0.77231
0.89500 0.89083 0.89057 0.86660 0.90794 0.88238 0.88568 0.88280
0.88314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.25 9.05 37.15 0.34 -0.92 16
2 C -0.13 -1.26 2.14 -90.62 -0.19 -1.45 16
3 C -0.15 -1.45 8.60 37.16 0.32 -1.14 16
4 C 0.16 1.56 2.66 -26.73 -0.07 1.49 16
5 H 0.10 0.95 7.90 -51.93 -0.41 0.54 16
6 O -0.56 -5.93 12.58 -35.23 -0.44 -6.38 16
7 C -0.17 -1.91 1.22 -154.51 -0.19 -2.09 16
8 C 0.16 2.28 4.46 -4.04 -0.02 2.27 16
9 N -0.75 -12.94 4.94 -61.38 -0.30 -13.25 16
10 C 0.56 12.86 7.72 -12.52 -0.10 12.77 16
11 O -0.54 -13.93 13.53 5.27 0.07 -13.86 16
12 C -0.26 -6.32 5.92 -104.37 -0.62 -6.94 16
13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16
14 C -0.24 -5.14 10.03 -39.37 -0.39 -5.53 16
15 C -0.10 -2.15 10.01 -39.60 -0.40 -2.54 16
16 C -0.15 -3.70 8.62 -38.88 -0.34 -4.03 16
17 C 0.15 3.94 5.48 -106.54 -0.58 3.36 16
18 C -0.42 -11.56 7.78 -37.82 -0.29 -11.86 16
19 H 0.11 3.15 5.73 -52.49 -0.30 2.85 16
20 C 0.07 1.77 5.25 -17.30 -0.09 1.67 16
21 N -0.79 -20.55 11.25 55.56 0.63 -19.93 16
22 Si 0.92 19.61 29.57 -169.99 -5.03 14.58 16
23 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16
24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16
25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16
26 C -0.17 -1.73 9.40 -26.70 -0.25 -1.98 16
27 C -0.16 -1.76 9.38 -26.70 -0.25 -2.02 16
28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16
31 H 0.08 0.84 6.97 -51.93 -0.36 0.48 16
32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
33 H 0.07 0.75 5.63 -51.93 -0.29 0.45 16
34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
35 H 0.38 3.31 9.04 45.56 0.41 3.72 16
36 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16
37 H 0.07 1.10 5.32 -51.93 -0.28 0.83 16
38 H 0.39 5.99 3.63 -40.82 -0.15 5.85 16
39 H 0.09 1.52 6.42 -52.48 -0.34 1.18 16
40 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16
41 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16
42 H 0.12 2.97 6.72 -52.49 -0.35 2.62 16
43 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16
44 H 0.10 1.09 7.01 -51.93 -0.36 0.73 16
45 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16
46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16
47 H 0.10 1.17 7.01 -51.92 -0.36 0.81 16
LS Contribution 370.80 15.07 5.59 5.59
Total: -1.00 -29.65 370.80 -9.12 -38.77
By element:
Atomic # 1 Polarization: 21.14 SS G_CDS: -6.13 Total: 15.01 kcal
Atomic # 6 Polarization: -17.04 SS G_CDS: -3.50 Total: -20.54 kcal
Atomic # 7 Polarization: -33.50 SS G_CDS: 0.32 Total: -33.17 kcal
Atomic # 8 Polarization: -19.87 SS G_CDS: -0.37 Total: -20.24 kcal
Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -29.65 -9.12 -38.77 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601409072.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.356 kcal
(2) G-P(sol) polarization free energy of solvation -29.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds