Wall clock time and date at job start Tue Mar 31 2020 12:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 C 1.53003 * 109.47209 * 120.00208 * 2 1 3 5 5 H 1.08995 * 109.46550 * 300.00120 * 4 2 1 6 6 O 1.42895 * 109.46804 * 60.00045 * 4 2 1 7 7 C 1.52999 * 109.47109 * 180.02562 * 4 2 1 8 8 C 1.53002 * 115.54910 * 325.58299 * 7 4 2 9 9 N 1.46505 * 109.47190 * 180.02562 * 8 7 4 10 10 C 1.34767 * 119.99982 * 179.97438 * 9 8 7 11 11 O 1.21613 * 120.00461 * 359.97438 * 10 9 8 12 12 C 1.47431 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.39221 * 120.28534 * 355.34804 * 12 10 9 14 14 C 1.38225 * 120.09688 * 179.97438 * 13 12 10 15 15 C 1.38821 * 120.67323 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.57407 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.87447 * 359.68116 * 16 15 14 18 18 C 1.40888 * 120.32414 * 180.29860 * 17 16 15 19 19 H 1.08000 * 120.00204 * 215.85002 * 18 17 16 20 20 C 1.40272 * 120.00374 * 35.84834 * 18 17 16 21 21 N 1.30636 * 119.99594 * 8.98028 * 20 18 17 22 22 Si 1.86798 * 120.00307 * 188.97543 * 20 18 17 23 23 H 1.48502 * 109.47245 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47076 * 120.00490 * 22 20 18 25 25 H 1.48500 * 109.47284 * 240.00055 * 22 20 18 26 26 C 1.52995 * 117.50100 * 111.25416 * 7 4 2 27 27 C 1.52996 * 117.49661 * 179.91193 * 7 4 2 28 28 H 1.08995 * 109.47462 * 300.00231 * 1 2 3 29 29 H 1.09003 * 109.47149 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47160 * 240.00349 * 2 1 3 32 32 H 1.09003 * 109.46846 * 60.00156 * 3 2 1 33 33 H 1.08999 * 109.46936 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47207 * 300.00052 * 3 2 1 35 35 H 0.96691 * 114.00089 * 60.00462 * 6 4 2 36 36 H 1.09010 * 109.47079 * 299.99883 * 8 7 4 37 37 H 1.08992 * 109.47502 * 60.00093 * 8 7 4 38 38 H 0.97002 * 119.99607 * 359.97438 * 9 8 7 39 39 H 1.08003 * 119.95061 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.66420 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.71455 * 179.97438 * 15 14 13 42 42 H 1.07994 * 120.06202 * 179.97438 * 16 15 14 43 43 H 0.97005 * 119.99688 * 179.97438 * 21 20 18 44 44 H 1.09005 * 117.49775 * 215.00200 * 26 7 4 45 45 H 1.09002 * 117.49666 * 0.02562 * 26 7 4 46 46 H 1.09002 * 117.50372 * 359.97438 * 27 7 4 47 47 H 1.09007 * 117.49793 * 144.99319 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1391 6 8 1.5636 -2.0685 1.2491 7 6 3.5700 -0.7207 1.2495 8 6 4.2301 -0.8265 -0.1267 9 7 5.6869 -0.8147 0.0283 10 6 6.4808 -0.8987 -1.0575 11 8 5.9880 -0.9848 -2.1660 12 6 7.9468 -0.8862 -0.9015 13 6 8.5177 -0.6909 0.3531 14 6 9.8926 -0.6805 0.4949 15 6 10.7195 -0.8629 -0.6052 16 6 10.1847 -1.0582 -1.8579 17 6 8.7882 -1.0804 -2.0282 18 6 8.2305 -1.2859 -3.3055 19 1 7.3226 -0.7732 -3.5873 20 6 8.8543 -2.1564 -4.2115 21 7 9.8470 -2.9083 -3.8168 22 14 8.2655 -2.2406 -5.9823 23 1 7.1353 -1.2966 -6.1736 24 1 9.3793 -1.8712 -6.8924 25 1 7.8135 -3.6216 -6.2885 26 6 4.2759 0.1287 2.3082 27 6 4.2764 -1.3974 2.4259 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.8490 -2.5865 0.4841 36 1 3.9237 -1.7563 -0.6062 37 1 3.9231 0.0184 -0.7429 38 1 6.0800 -0.7464 0.9125 39 1 7.8854 -0.5482 1.2170 40 1 10.3281 -0.5280 1.4714 41 1 11.7917 -0.8515 -0.4767 42 1 10.8357 -1.1989 -2.7081 43 1 10.2781 -3.5105 -4.4432 44 1 5.2107 0.6122 2.0243 45 1 3.6503 0.6868 3.0049 46 1 3.6512 -1.8427 3.1999 47 1 5.2115 -1.9182 2.2194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601409072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:07 Heat of formation + Delta-G solvation = -70.247199 kcal Electronic energy + Delta-G solvation = -27097.229987 eV Core-core repulsion = 23437.264120 eV Total energy + Delta-G solvation = -3659.965867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29322 -40.14767 -38.52531 -37.18210 -35.64365 -35.08823 -34.46207 -31.87291 -31.42370 -28.97125 -27.73452 -27.35030 -26.57049 -23.87682 -23.30278 -22.71073 -21.71507 -21.21968 -20.39146 -19.34433 -18.29351 -17.33288 -17.20175 -16.99229 -16.29973 -16.20036 -16.09726 -15.92079 -15.45607 -15.02825 -14.86571 -14.60449 -14.47878 -14.02651 -13.90627 -13.72002 -13.57824 -13.36138 -13.01167 -12.89953 -12.87551 -12.85919 -12.45852 -12.38213 -12.33857 -12.19230 -11.93041 -11.83423 -11.56099 -11.52211 -11.41228 -11.15074 -10.95967 -10.59265 -10.23239 -9.90299 -9.40262 -9.21980 -8.68417 -6.37888 0.50457 0.99775 1.32908 1.46344 1.48940 2.20850 2.33679 2.44955 2.68994 2.79250 3.41874 3.60076 3.69105 3.70896 3.84895 3.98132 4.05764 4.13179 4.29876 4.35154 4.40161 4.57142 4.60022 4.70981 4.76672 4.76771 4.80763 4.83688 4.93255 4.99125 5.02295 5.04974 5.08485 5.12476 5.22852 5.23748 5.26715 5.33206 5.43433 5.46435 5.60732 5.66718 5.80930 6.04612 6.10585 6.34076 6.63709 6.75560 6.79029 6.91353 7.00278 7.65211 8.30029 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013992 B = 0.003836 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.652451 B = 7297.548174 C = 8682.947658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C -0.147 4.147 4 C 0.164 3.836 5 H 0.112 0.888 6 O -0.567 6.567 7 C -0.173 4.173 8 C 0.158 3.842 9 N -0.728 5.728 10 C 0.559 3.441 11 O -0.579 6.579 12 C -0.280 4.280 13 C -0.055 4.055 14 C -0.234 4.234 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.117 3.883 18 C -0.464 4.464 19 H 0.087 0.913 20 C 0.032 3.968 21 N -0.824 5.824 22 Si 0.978 3.022 23 H -0.270 1.270 24 H -0.255 1.255 25 H -0.267 1.267 26 C -0.157 4.157 27 C -0.162 4.162 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.383 0.617 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.403 0.597 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.289 0.711 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 4.875 11.496 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.204 4.204 4 C 0.104 3.896 5 H 0.130 0.870 6 O -0.373 6.373 7 C -0.173 4.173 8 C 0.035 3.965 9 N -0.384 5.384 10 C 0.352 3.648 11 O -0.460 6.460 12 C -0.285 4.285 13 C -0.073 4.073 14 C -0.253 4.253 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.114 3.886 18 C -0.493 4.493 19 H 0.104 0.896 20 C -0.183 4.183 21 N -0.451 5.451 22 Si 0.799 3.201 23 H -0.194 1.194 24 H -0.179 1.179 25 H -0.192 1.192 26 C -0.194 4.194 27 C -0.199 4.199 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.231 0.769 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.242 0.758 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.761 4.823 11.197 17.649 hybrid contribution 0.609 -0.490 -1.328 1.541 sum -12.153 4.333 9.869 16.244 Atomic orbital electron populations 1.21715 0.93731 1.02098 1.01994 1.21806 0.97230 0.97386 0.98238 1.21854 1.01050 0.95128 1.02417 1.21389 0.86975 0.82679 0.98524 0.87046 1.86508 1.76535 1.23823 1.50426 1.22363 0.96184 1.08864 0.89923 1.20762 0.79141 1.00898 0.95716 1.45885 1.06298 1.77019 1.09176 1.18426 0.87367 0.75232 0.83754 1.90632 1.76932 1.51880 1.26584 1.19859 0.91661 1.22020 0.94961 1.21027 0.95491 0.96210 0.94594 1.20807 0.93085 1.12816 0.98605 1.21184 0.99408 0.97648 0.92820 1.21289 0.94799 1.06415 0.97011 1.17855 0.91909 0.86518 0.92355 1.20284 1.08942 1.22262 0.97795 0.89553 1.26801 0.93485 0.93541 1.04427 1.69751 1.19327 1.17946 1.38057 0.85226 0.79243 0.78945 0.76684 1.19372 1.17886 1.19158 1.23185 1.02431 0.93654 1.00153 1.23021 1.01968 0.95544 0.99329 0.91987 0.92592 0.92466 0.92018 0.91153 0.92981 0.92727 0.76897 0.93399 0.91561 0.75806 0.85379 0.84866 0.86166 0.88427 0.90075 0.88814 0.86231 0.87158 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.05 71.98 0.65 -1.57 16 2 C -0.13 -2.33 2.14 -10.79 -0.02 -2.36 16 3 C -0.15 -2.66 8.60 71.98 0.62 -2.05 16 4 C 0.16 2.93 2.66 30.59 0.08 3.01 16 5 H 0.11 1.76 7.90 -2.39 -0.02 1.75 16 6 O -0.57 -11.09 12.58 -148.98 -1.87 -12.97 16 7 C -0.17 -3.50 1.22 -52.18 -0.06 -3.57 16 8 C 0.16 4.57 4.46 86.38 0.39 4.95 16 9 N -0.73 -24.77 4.94 -466.35 -2.30 -27.07 16 10 C 0.56 26.05 7.72 86.67 0.67 26.72 16 11 O -0.58 -31.48 13.53 -4.07 -0.06 -31.53 16 12 C -0.28 -13.69 5.92 -19.70 -0.12 -13.80 16 13 C -0.05 -2.18 9.52 22.50 0.21 -1.96 16 14 C -0.23 -9.07 10.03 22.41 0.22 -8.84 16 15 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 16 C -0.18 -9.09 8.62 22.72 0.20 -8.90 16 17 C 0.12 6.50 5.48 -21.11 -0.12 6.38 16 18 C -0.46 -26.94 7.78 23.41 0.18 -26.75 16 19 H 0.09 5.30 5.73 -2.91 -0.02 5.28 16 20 C 0.03 1.72 5.25 85.37 0.45 2.17 16 21 N -0.82 -44.37 11.25 21.88 0.25 -44.13 16 22 Si 0.98 42.01 29.57 68.60 2.03 44.04 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 C -0.16 -2.71 9.40 30.61 0.29 -2.42 16 27 C -0.16 -3.07 9.38 30.61 0.29 -2.79 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.96 7.68 -2.38 -0.02 0.94 16 31 H 0.06 1.33 6.97 -2.39 -0.02 1.32 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.10 5.63 -2.39 -0.01 1.09 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.38 6.43 9.04 -74.06 -0.67 5.76 16 36 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.07 2.04 5.32 -2.39 -0.01 2.03 16 38 H 0.40 11.56 3.63 -92.71 -0.34 11.23 16 39 H 0.13 3.95 6.42 -2.91 -0.02 3.93 16 40 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.10 5.28 6.72 -2.91 -0.02 5.26 16 43 H 0.29 13.99 8.29 -92.70 -0.77 13.23 16 44 H 0.09 1.76 7.01 -2.38 -0.02 1.74 16 45 H 0.12 1.56 8.05 -2.39 -0.02 1.54 16 46 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.09 1.88 7.01 -2.38 -0.02 1.86 16 Total: -1.00 -67.78 370.80 2.19 -65.60 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.01 Total: 41.60 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.15 Total: -35.53 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -2.06 Total: -71.20 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.93 Total: -44.50 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -67.78 2.19 -65.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.652 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds