Wall clock time and date at job start Tue Mar 31 2020 11:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47077 * 2 1 4 4 C 1.53001 * 109.47047 * 240.00036 * 2 1 3 5 5 C 1.53001 * 109.46917 * 120.00010 * 2 1 3 6 6 H 1.09000 * 109.51536 * 299.89569 * 5 2 1 7 7 C 1.52885 * 109.57915 * 179.88158 * 5 2 1 8 8 N 1.47155 * 108.60491 * 187.92422 * 7 5 2 9 9 C 1.34776 * 120.97934 * 230.49804 * 8 7 5 10 10 O 1.21615 * 119.99792 * 5.45648 * 9 8 7 11 11 C 1.47427 * 120.00198 * 185.45415 * 9 8 7 12 12 C 1.39231 * 120.28103 * 45.00530 * 11 9 8 13 13 C 1.38216 * 120.09439 * 180.02562 * 12 11 9 14 14 C 1.38832 * 120.67524 * 359.97438 * 13 12 11 15 15 C 1.37598 * 120.56762 * 0.02562 * 14 13 12 16 16 C 1.40703 * 119.88346 * 0.02562 * 15 14 13 17 17 C 1.40890 * 120.32813 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00053 * 210.27897 * 17 16 15 19 19 C 1.40274 * 119.99813 * 30.27389 * 17 16 15 20 20 N 1.30629 * 120.00308 * 15.05134 * 19 17 16 21 21 Si 1.86799 * 119.99903 * 195.04537 * 19 17 16 22 22 H 1.48496 * 109.47133 * 90.00500 * 21 19 17 23 23 H 1.48502 * 109.47060 * 210.00344 * 21 19 17 24 24 H 1.48496 * 109.47432 * 330.00426 * 21 19 17 25 25 C 1.47149 * 118.03757 * 50.22608 * 8 7 5 26 26 C 1.53294 * 108.38308 * 309.71536 * 25 8 7 27 27 O 1.42960 * 109.51418 * 60.00243 * 5 2 1 28 28 H 1.09000 * 109.46878 * 300.00363 * 1 2 3 29 29 H 1.09001 * 109.47217 * 59.99848 * 1 2 3 30 30 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47008 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47221 * 300.00149 * 3 2 1 33 33 H 1.08995 * 109.47126 * 60.00168 * 3 2 1 34 34 H 1.09000 * 109.47019 * 300.00447 * 4 2 1 35 35 H 1.09001 * 109.47017 * 59.99994 * 4 2 1 36 36 H 1.08999 * 109.47192 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.62009 * 68.10026 * 7 5 2 38 38 H 1.09006 * 109.52074 * 307.68502 * 7 5 2 39 39 H 1.08004 * 119.94995 * 0.04174 * 12 11 9 40 40 H 1.08001 * 119.66489 * 180.02562 * 13 12 11 41 41 H 1.07993 * 119.71116 * 180.28537 * 14 13 12 42 42 H 1.07999 * 120.05566 * 180.02562 * 15 14 13 43 43 H 0.96997 * 120.00248 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.68078 * 69.43426 * 25 8 7 45 45 H 1.08995 * 109.68426 * 189.95675 * 25 8 7 46 46 H 1.09004 * 109.51346 * 172.22233 * 26 25 8 47 47 H 1.08998 * 109.51536 * 292.37420 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2493 6 1 1.6786 -0.2069 2.1397 7 6 3.5689 -0.7253 1.2503 8 7 4.0353 -1.5830 2.3514 9 6 4.9538 -1.1415 3.2333 10 8 5.3364 0.0120 3.1867 11 6 5.4948 -2.0567 4.2547 12 6 5.8852 -3.3467 3.9053 13 6 6.3914 -4.2018 4.8660 14 6 6.5177 -3.7892 6.1856 15 6 6.1403 -2.5204 6.5613 16 6 5.6210 -1.6308 5.6028 17 6 5.2312 -0.3297 5.9772 18 1 4.4317 0.1677 5.4483 19 6 5.8815 0.3195 7.0371 20 7 7.0207 -0.1384 7.4832 21 14 5.1186 1.8392 7.8104 22 1 4.2327 1.4327 8.9307 23 1 6.1934 2.7250 8.3256 24 1 4.3233 2.5679 6.7898 25 6 3.4648 -2.9346 2.4646 26 6 1.9372 -2.8210 2.4075 27 8 1.5640 -2.0693 1.2501 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7209 -1.2495 37 1 3.9374 0.2903 1.3945 38 1 3.9327 -1.1170 0.3004 39 1 5.7926 -3.6795 2.8820 40 1 6.6925 -5.2008 4.5872 41 1 6.9194 -4.4686 6.9227 42 1 6.2425 -2.2080 7.5900 43 1 7.4705 0.3108 8.2158 44 1 3.8180 -3.5525 1.6390 45 1 3.7651 -3.3816 3.4122 46 1 1.4998 -3.8178 2.3508 47 1 1.5761 -2.3146 3.3026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601540722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:59 Heat of formation + Delta-G solvation = -83.818974 kcal Electronic energy + Delta-G solvation = -27881.746148 eV Core-core repulsion = 24221.191764 eV Total energy + Delta-G solvation = -3660.554384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58544 -40.04133 -38.54250 -37.39163 -35.86871 -35.38949 -32.25031 -31.71159 -31.02639 -29.00000 -28.18822 -27.86120 -27.21623 -25.27330 -24.30810 -22.85843 -22.52586 -20.33858 -19.88421 -19.15855 -18.17861 -17.60033 -17.24562 -16.94438 -16.51155 -16.27997 -15.97517 -15.86461 -15.50218 -14.92175 -14.74390 -14.58071 -14.55641 -14.44796 -14.10063 -13.88050 -13.54114 -13.35902 -13.08759 -13.01335 -12.87303 -12.76795 -12.70307 -12.61399 -12.33147 -12.27193 -12.05159 -11.84596 -11.70800 -11.60364 -11.52298 -11.33770 -11.14348 -11.06876 -10.51931 -9.56309 -9.34646 -9.30528 -8.74081 -6.42485 0.59508 0.97865 1.29340 1.41903 1.45423 1.94066 2.14997 2.16871 2.65986 2.69246 3.58781 3.62507 3.76082 3.86501 3.92867 4.06493 4.10306 4.16857 4.32424 4.37715 4.40573 4.51059 4.54681 4.61434 4.72492 4.74106 4.79327 4.83553 4.88038 4.91599 4.96005 5.04970 5.05250 5.08382 5.16596 5.18861 5.26820 5.31082 5.47095 5.50193 5.53680 5.62061 5.83470 5.95624 6.07520 6.12140 6.25111 6.44306 6.61473 6.82619 6.91288 7.41973 8.23915 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.004569 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.041836 B = 6126.680632 C = 7448.592450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C -0.146 4.146 4 C -0.136 4.136 5 C 0.096 3.904 6 H 0.038 0.962 7 C 0.082 3.918 8 N -0.621 5.621 9 C 0.576 3.424 10 O -0.585 6.585 11 C -0.273 4.273 12 C -0.054 4.054 13 C -0.233 4.233 14 C -0.089 4.089 15 C -0.180 4.180 16 C 0.119 3.881 17 C -0.468 4.468 18 H 0.055 0.945 19 C 0.039 3.961 20 N -0.815 5.815 21 Si 0.974 3.026 22 H -0.250 1.250 23 H -0.262 1.262 24 H -0.274 1.274 25 C 0.071 3.929 26 C 0.050 3.950 27 O -0.371 6.371 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.292 0.708 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.140 0.860 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -4.420 -11.645 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.056 4.056 3 C -0.203 4.203 4 C -0.193 4.193 5 C 0.037 3.963 6 H 0.056 0.944 7 C -0.040 4.040 8 N -0.356 5.356 9 C 0.369 3.631 10 O -0.465 6.465 11 C -0.277 4.277 12 C -0.073 4.073 13 C -0.252 4.252 14 C -0.108 4.108 15 C -0.200 4.200 16 C 0.116 3.884 17 C -0.497 4.497 18 H 0.073 0.927 19 C -0.177 4.177 20 N -0.441 5.441 21 Si 0.795 3.205 22 H -0.174 1.174 23 H -0.186 1.186 24 H -0.199 1.199 25 C -0.052 4.052 26 C -0.027 4.027 27 O -0.290 6.290 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.157 0.843 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.726 -3.842 -11.654 16.298 hybrid contribution 0.377 1.056 1.004 1.505 sum -10.349 -2.786 -10.650 15.109 Atomic orbital electron populations 1.21758 0.92773 1.02372 1.01996 1.20542 0.97167 0.94726 0.93123 1.21947 1.00997 0.94580 1.02783 1.21846 1.00644 1.00746 0.96040 1.22333 0.91417 0.83822 0.98681 0.94412 1.22340 0.95574 0.96247 0.89867 1.48202 1.41739 1.16498 1.29145 1.18644 0.77915 0.86610 0.79943 1.90644 1.61877 1.20753 1.73269 1.19682 1.18104 0.96790 0.93175 1.20960 0.96292 0.91240 0.98769 1.20757 1.10742 1.00646 0.93087 1.21155 0.97614 0.95217 0.96768 1.21223 1.06425 0.93583 0.98749 1.17712 0.87854 0.92867 0.90008 1.19573 1.16812 0.99861 1.13464 0.92670 1.26672 0.93904 1.01885 0.95221 1.69735 1.12331 1.39832 1.22158 0.85333 0.79241 0.77188 0.78755 1.17367 1.18565 1.19857 1.22726 0.94742 0.83096 1.04600 1.23105 0.93218 0.98316 0.88070 1.87881 1.75532 1.23165 1.42384 0.93488 0.90829 0.92090 0.93110 0.89797 0.93255 0.91965 0.90943 0.93011 0.90648 0.89533 0.85851 0.84909 0.86086 0.88120 0.89760 0.89045 0.88424 0.84271 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.33 71.98 0.60 -1.86 16 2 C -0.05 -1.17 0.63 -52.18 -0.03 -1.21 16 3 C -0.15 -3.06 8.13 71.98 0.59 -2.48 16 4 C -0.14 -2.52 7.99 71.98 0.58 -1.95 16 5 C 0.10 2.67 2.02 30.56 0.06 2.73 16 6 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 7 C 0.08 2.67 5.15 86.22 0.44 3.11 16 8 N -0.62 -23.34 3.03 -822.01 -2.49 -25.83 16 9 C 0.58 28.02 6.67 86.66 0.58 28.60 16 10 O -0.58 -33.36 15.03 -4.08 -0.06 -33.42 16 11 C -0.27 -13.48 4.99 -19.70 -0.10 -13.57 16 12 C -0.05 -2.20 7.51 22.50 0.17 -2.04 16 13 C -0.23 -9.02 10.03 22.41 0.22 -8.79 16 14 C -0.09 -3.81 10.01 22.26 0.22 -3.58 16 15 C -0.18 -9.22 8.65 22.72 0.20 -9.03 16 16 C 0.12 6.55 5.53 -21.11 -0.12 6.43 16 17 C -0.47 -27.02 7.77 23.41 0.18 -26.84 16 18 H 0.06 3.34 7.01 -2.91 -0.02 3.32 16 19 C 0.04 2.10 5.16 85.37 0.44 2.54 16 20 N -0.82 -43.85 11.19 21.88 0.24 -43.61 16 21 Si 0.97 41.22 29.59 68.60 2.03 43.25 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 C 0.07 2.05 5.21 86.35 0.45 2.50 16 26 C 0.05 1.25 6.98 72.08 0.50 1.75 16 27 O -0.37 -9.62 9.04 -148.98 -1.35 -10.97 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.18 7.68 -2.39 -0.02 1.16 16 31 H 0.05 1.18 6.63 -2.39 -0.02 1.16 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.01 6.28 -2.39 -0.01 1.00 16 37 H 0.08 2.81 5.83 -2.39 -0.01 2.80 16 38 H 0.09 2.49 6.06 -2.38 -0.01 2.48 16 39 H 0.12 4.21 7.05 -2.91 -0.02 4.19 16 40 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.10 5.37 6.50 -2.91 -0.02 5.35 16 43 H 0.29 14.08 8.29 -92.71 -0.77 13.31 16 44 H 0.09 2.22 8.13 -2.39 -0.02 2.20 16 45 H 0.10 3.10 5.23 -2.39 -0.01 3.08 16 46 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 47 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.78 363.60 4.33 -64.45 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.96 Total: 29.79 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 4.98 Total: -23.67 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -2.24 Total: -69.44 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.41 Total: -44.39 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -68.78 4.33 -64.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.369 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds