Wall clock time and date at job start Tue Mar 31 2020 12:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46979 * 2 1 4 4 C 1.53000 * 109.47187 * 120.00309 * 2 1 3 5 5 N 1.46497 * 109.47087 * 185.00062 * 4 2 1 6 6 C 1.34774 * 120.00234 * 179.97438 * 5 4 2 7 7 O 1.21618 * 119.99610 * 359.97438 * 6 5 4 8 8 C 1.47428 * 120.00477 * 180.02562 * 6 5 4 9 9 C 1.39233 * 120.27966 * 357.06144 * 8 6 5 10 10 C 1.38226 * 120.08965 * 180.28388 * 9 8 6 11 11 C 1.38825 * 120.67689 * 359.70940 * 10 9 8 12 12 C 1.37607 * 120.57039 * 0.02562 * 11 10 9 13 13 C 1.40701 * 119.87939 * 359.97438 * 12 11 10 14 14 C 1.40890 * 120.32862 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00394 * 145.85600 * 14 13 12 16 16 C 1.40275 * 120.00033 * 325.85922 * 14 13 12 17 17 N 1.30634 * 119.99942 * 340.94548 * 16 14 13 18 18 Si 1.86793 * 120.00223 * 160.94696 * 16 14 13 19 19 H 1.48511 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47369 * 299.99835 * 18 16 14 21 21 H 1.48504 * 109.47149 * 60.00271 * 18 16 14 22 22 O 1.42901 * 109.47018 * 240.00271 * 2 1 3 23 23 C 1.42897 * 114.00211 * 60.00078 * 22 2 1 24 24 C 1.52998 * 109.47522 * 179.97438 * 23 22 2 25 25 C 1.52996 * 117.50253 * 243.62458 * 24 23 22 26 26 C 1.53003 * 117.50315 * 174.99716 * 24 23 22 27 27 H 1.08998 * 109.46841 * 299.99815 * 1 2 3 28 28 H 1.08997 * 109.46825 * 60.00076 * 1 2 3 29 29 H 1.08995 * 109.46619 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46927 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46932 * 300.00030 * 3 2 1 32 32 H 1.08999 * 109.46860 * 59.99963 * 3 2 1 33 33 H 1.08997 * 109.47147 * 64.99916 * 4 2 1 34 34 H 1.09003 * 109.46728 * 304.99706 * 4 2 1 35 35 H 0.97004 * 120.00040 * 0.02562 * 5 4 2 36 36 H 1.07998 * 119.95559 * 359.97438 * 9 8 6 37 37 H 1.07998 * 119.65979 * 179.74311 * 10 9 8 38 38 H 1.07996 * 119.71807 * 180.02562 * 11 10 9 39 39 H 1.07995 * 120.05614 * 180.02562 * 12 11 10 40 40 H 0.97001 * 119.99671 * 354.76570 * 17 16 14 41 41 H 1.08997 * 109.47130 * 300.00232 * 23 22 2 42 42 H 1.09009 * 109.47284 * 59.99772 * 23 22 2 43 43 H 1.08997 * 115.54734 * 29.33108 * 24 23 22 44 44 H 1.08999 * 117.49989 * 359.97438 * 25 24 23 45 45 H 1.08998 * 117.50711 * 145.01831 * 25 24 23 46 46 H 1.08999 * 117.49971 * 214.97776 * 26 24 23 47 47 H 1.09001 * 117.49669 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.6179 1.3109 6 6 4.1731 -1.1827 2.3329 7 8 3.5682 -1.7777 3.2042 8 6 5.6423 -1.0782 2.3954 9 6 6.3457 -0.4505 1.3707 10 6 7.7237 -0.3599 1.4304 11 6 8.4219 -0.8849 2.5093 12 6 7.7541 -1.5061 3.5397 13 6 6.3515 -1.6116 3.5032 14 6 5.6582 -2.2452 4.5533 15 1 4.6803 -1.8921 4.8453 16 6 6.2381 -3.3349 5.2197 17 7 7.2152 -3.9976 4.6607 18 14 5.6131 -3.8383 6.9065 19 1 6.3860 -5.0102 7.3913 20 1 5.7810 -2.7076 7.8544 21 1 4.1752 -4.1980 6.8146 22 8 2.0064 -0.6736 -1.1668 23 6 1.5847 -0.0773 -2.3951 24 6 2.1506 -0.8763 -3.5707 25 6 3.1368 -0.1648 -4.4991 26 6 1.7154 -0.4656 -4.9789 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7517 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1369 35 1 3.9824 -0.1423 0.6165 36 1 5.8143 -0.0383 0.5257 37 1 8.2626 0.1248 0.6298 38 1 9.4985 -0.8051 2.5403 39 1 8.3056 -1.9113 4.3752 40 1 7.4891 -3.7854 3.7547 41 1 0.4959 -0.0788 -2.4448 42 1 1.9492 0.9489 -2.4447 43 1 2.3116 -1.9379 -3.3834 44 1 3.3822 0.8727 -4.2726 45 1 3.9471 -0.7582 -4.9227 46 1 1.5906 -1.2569 -5.7180 47 1 1.0262 0.3742 -5.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601627133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:53 Heat of formation + Delta-G solvation = -66.389834 kcal Electronic energy + Delta-G solvation = -26694.632831 eV Core-core repulsion = 23034.834232 eV Total energy + Delta-G solvation = -3659.798599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05298 -40.13304 -38.76572 -37.93510 -36.02269 -35.43552 -33.32568 -31.77380 -31.16415 -28.62095 -28.36365 -27.48960 -26.54307 -23.96663 -23.25423 -22.76509 -21.62415 -21.26062 -21.02051 -19.94757 -18.30537 -17.67628 -17.09489 -16.83435 -16.52455 -16.14901 -16.03284 -15.72022 -15.62735 -15.48696 -15.20509 -14.57323 -14.46930 -14.27789 -14.12697 -13.91209 -13.67983 -13.42439 -12.95926 -12.92159 -12.87596 -12.69831 -12.51693 -12.46731 -12.37188 -12.25133 -12.02027 -11.94929 -11.60641 -11.42944 -11.32345 -11.14820 -10.96411 -10.40769 -10.30742 -9.99666 -9.60906 -9.49753 -9.10016 -6.46212 0.39953 0.90281 1.46351 1.62147 1.76885 2.24569 2.31450 2.40692 2.49567 2.74651 2.95204 3.56084 3.58185 3.82449 3.91374 3.95084 3.98606 4.11510 4.20528 4.26607 4.35178 4.43634 4.47525 4.54836 4.60255 4.64187 4.71345 4.74741 4.77877 4.81893 4.85759 4.87920 4.96994 5.01296 5.10945 5.13573 5.23958 5.26514 5.29940 5.42465 5.57449 5.65550 5.71230 5.89125 5.96498 6.20236 6.31454 6.33208 6.68655 6.85368 6.92553 7.60439 8.04286 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.003340 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.952689 B = 8380.205897 C = 9376.084439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 C -0.176 4.176 4 C 0.138 3.862 5 N -0.720 5.720 6 C 0.555 3.445 7 O -0.581 6.581 8 C -0.283 4.283 9 C -0.042 4.042 10 C -0.244 4.244 11 C -0.071 4.071 12 C -0.225 4.225 13 C 0.096 3.904 14 C -0.511 4.511 15 H 0.082 0.918 16 C -0.004 4.004 17 N -0.818 5.818 18 Si 1.116 2.884 19 H -0.264 1.264 20 H -0.258 1.258 21 H -0.272 1.272 22 O -0.394 6.394 23 C 0.087 3.913 24 C -0.173 4.173 25 C -0.181 4.181 26 C -0.159 4.159 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.405 0.595 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.282 0.718 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 10.990 -15.663 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 C -0.234 4.234 4 C 0.014 3.986 5 N -0.375 5.375 6 C 0.349 3.651 7 O -0.463 6.463 8 C -0.287 4.287 9 C -0.060 4.060 10 C -0.263 4.263 11 C -0.090 4.090 12 C -0.245 4.245 13 C 0.092 3.908 14 C -0.539 4.539 15 H 0.100 0.900 16 C -0.219 4.219 17 N -0.442 5.442 18 Si 0.934 3.066 19 H -0.188 1.188 20 H -0.182 1.182 21 H -0.197 1.197 22 O -0.314 6.314 23 C 0.011 3.989 24 C -0.192 4.192 25 C -0.218 4.218 26 C -0.195 4.195 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.242 0.758 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.918 9.326 -13.842 19.944 hybrid contribution 0.080 1.003 -1.481 1.791 sum -10.838 10.329 -15.324 21.423 Atomic orbital electron populations 1.22337 0.92899 1.03360 1.04370 1.21665 0.94888 0.92204 0.84287 1.22414 1.01883 0.94954 1.04123 1.21290 0.80406 1.00123 0.96806 1.45723 1.07236 1.57848 1.26658 1.18455 0.87989 0.77751 0.80950 1.90649 1.70794 1.44400 1.40416 1.19803 0.92155 1.17519 0.99258 1.21104 0.94781 0.94606 0.95548 1.20795 0.93692 1.10507 1.01264 1.21153 0.99410 0.95038 0.93360 1.21217 0.94259 1.08216 1.00792 1.17895 0.92273 0.90047 0.90562 1.21120 1.05265 1.13791 1.13692 0.90044 1.28505 0.92358 0.93040 1.07972 1.70500 1.22304 1.35709 1.15694 0.83020 0.76440 0.77626 0.69553 1.18842 1.18212 1.19698 1.88016 1.75038 1.54660 1.13701 1.22181 0.98736 0.95884 0.82097 1.22137 1.05961 0.99967 0.91089 1.23142 0.93588 1.01749 1.03291 1.23057 0.97711 1.03932 0.94836 0.90009 0.89714 0.92079 0.92484 0.89761 0.90464 0.93555 0.90631 0.75780 0.85417 0.84596 0.85631 0.89138 0.90559 0.91490 0.91726 0.88914 0.87945 0.88786 0.87813 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.25 71.98 0.59 -2.31 16 2 C 0.11 2.42 0.80 -10.79 -0.01 2.42 16 3 C -0.18 -3.22 8.02 71.98 0.58 -2.64 16 4 C 0.14 4.34 4.84 86.38 0.42 4.75 16 5 N -0.72 -26.56 5.14 -466.37 -2.40 -28.96 16 6 C 0.56 27.19 7.73 86.66 0.67 27.86 16 7 O -0.58 -33.00 13.55 -4.09 -0.06 -33.05 16 8 C -0.28 -14.24 5.92 -19.70 -0.12 -14.36 16 9 C -0.04 -1.72 9.53 22.51 0.21 -1.51 16 10 C -0.24 -9.55 10.03 22.41 0.22 -9.33 16 11 C -0.07 -3.06 10.01 22.26 0.22 -2.84 16 12 C -0.23 -11.68 7.86 22.72 0.18 -11.50 16 13 C 0.10 5.41 5.18 -21.11 -0.11 5.31 16 14 C -0.51 -30.28 7.66 23.42 0.18 -30.10 16 15 H 0.08 5.09 5.91 -2.91 -0.02 5.08 16 16 C 0.00 -0.21 5.04 85.37 0.43 0.23 16 17 N -0.82 -46.82 12.57 21.88 0.27 -46.54 16 18 Si 1.12 48.12 29.98 68.60 2.06 50.18 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 O -0.39 -9.75 9.93 -148.98 -1.48 -11.23 16 23 C 0.09 1.54 5.42 71.98 0.39 1.93 16 24 C -0.17 -3.13 6.06 -10.79 -0.07 -3.20 16 25 C -0.18 -2.75 10.18 30.59 0.31 -2.44 16 26 C -0.16 -2.02 10.25 30.60 0.31 -1.71 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.07 6.54 -2.39 -0.02 1.05 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.16 6.57 -2.39 -0.02 1.15 16 31 H 0.08 1.14 6.54 -2.39 -0.02 1.12 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.40 12.96 5.03 -92.71 -0.47 12.50 16 36 H 0.13 4.23 6.41 -2.91 -0.02 4.21 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.09 4.88 6.93 -2.91 -0.02 4.86 16 40 H 0.28 16.66 6.54 -92.71 -0.61 16.05 16 41 H 0.07 0.99 6.42 -2.39 -0.02 0.97 16 42 H 0.06 0.96 6.15 -2.38 -0.01 0.95 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -71.72 375.74 3.50 -68.22 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.67 Total: 40.83 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 4.43 Total: -39.44 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -2.12 Total: -75.50 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.54 Total: -44.29 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.06 Total: 50.18 kcal Total: -71.72 3.50 -68.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601627133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.831 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds