Wall clock time and date at job start Tue Mar 31 2020 12:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 C 1.53004 * 109.47053 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47105 * 185.10208 * 4 3 2 6 6 C 1.46902 * 110.99824 * 170.91614 * 5 4 3 7 7 C 1.52997 * 109.47357 * 287.10858 * 6 5 4 8 8 H 1.09000 * 109.47146 * 57.47440 * 7 6 5 9 9 C 1.53005 * 109.47127 * 297.47711 * 7 6 5 10 10 C 1.52996 * 109.47467 * 177.47567 * 7 6 5 11 11 C 1.50704 * 109.47390 * 184.99967 * 10 7 6 12 12 H 1.08004 * 119.99803 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00064 * 179.72308 * 11 10 7 14 14 N 1.31513 * 120.00020 * 0.27999 * 13 11 10 15 15 Si 1.86802 * 119.99970 * 180.27424 * 13 11 10 16 16 H 1.48502 * 109.47040 * 59.99933 * 15 13 11 17 17 H 1.48493 * 109.47101 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46997 * 300.00329 * 15 13 11 19 19 C 1.46899 * 111.00095 * 294.86775 * 5 4 3 20 20 H 1.09003 * 109.63982 * 52.14987 * 19 5 4 21 21 C 1.53876 * 109.64366 * 172.43762 * 19 5 4 22 22 C 1.55058 * 106.62225 * 167.03719 * 21 19 5 23 23 S 1.83288 * 102.56242 * 317.56509 * 22 21 19 24 24 O 1.42099 * 109.35430 * 269.81305 * 23 22 21 25 25 O 1.42106 * 109.47117 * 136.65063 * 23 22 21 26 26 C 1.54164 * 109.64852 * 291.71317 * 19 5 4 27 27 H 1.09003 * 109.46983 * 59.99833 * 1 2 3 28 28 H 1.08993 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46763 * 300.00585 * 1 2 3 30 30 H 1.08993 * 109.47127 * 239.99882 * 2 1 3 31 31 H 1.08999 * 109.46778 * 119.99704 * 2 1 3 32 32 H 1.08994 * 109.47599 * 60.00363 * 3 2 1 33 33 H 1.08999 * 109.47086 * 299.99515 * 3 2 1 34 34 H 1.09000 * 109.47189 * 65.10260 * 4 3 2 35 35 H 1.08996 * 109.47215 * 305.10289 * 4 3 2 36 36 H 1.09002 * 109.47361 * 167.10734 * 6 5 4 37 37 H 1.08995 * 109.47268 * 47.10736 * 6 5 4 38 38 H 1.08999 * 109.47359 * 184.67907 * 9 7 6 39 39 H 1.09004 * 109.46701 * 304.67859 * 9 7 6 40 40 H 1.09003 * 109.47278 * 64.67749 * 9 7 6 41 41 H 1.09003 * 109.47322 * 65.00160 * 10 7 6 42 42 H 1.08998 * 109.46894 * 305.00008 * 10 7 6 43 43 H 0.97000 * 119.99742 * 179.97438 * 14 13 11 44 44 H 1.08998 * 110.03360 * 286.32358 * 21 19 5 45 45 H 1.08999 * 110.03130 * 47.74582 * 21 19 5 46 46 H 1.08998 * 110.78551 * 199.29854 * 22 21 19 47 47 H 1.08996 * 110.95094 * 75.91051 * 22 21 19 48 48 H 1.08996 * 110.31779 * 331.14260 * 26 19 5 49 49 H 1.09000 * 110.31870 * 93.23721 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8220 0.1238 6 6 5.5118 2.8475 0.3441 7 6 5.8198 2.3837 1.7692 8 1 5.4095 1.3857 1.9231 9 6 5.1883 3.3545 2.7691 10 6 7.3350 2.3500 1.9784 11 6 7.6418 1.7774 3.3382 12 1 6.8365 1.4687 3.9884 13 6 8.9506 1.6427 3.7502 14 7 9.9312 2.0191 2.9588 15 14 9.3311 0.9258 5.4327 16 1 8.7843 -0.4522 5.5188 17 1 10.8019 0.8887 5.6339 18 1 8.7094 1.7715 6.4833 19 6 3.6919 3.6183 -1.0546 20 1 2.6212 3.5283 -1.2380 21 6 4.0502 5.0952 -0.8132 22 6 3.9508 5.8061 -2.1876 23 16 4.7415 4.5998 -3.3185 24 8 6.1339 4.8721 -3.3987 25 8 3.9720 4.4909 -4.5082 26 6 4.4728 3.1148 -2.2847 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 1.0097 -0.9313 35 1 3.9330 0.8517 0.8416 36 1 5.8828 3.8628 0.2043 37 1 5.9991 2.1814 -0.3679 38 1 5.4766 3.0719 3.7816 39 1 5.5356 4.3667 2.5616 40 1 4.1029 3.3166 2.6764 41 1 7.7335 3.3624 1.9123 42 1 7.7941 1.7279 1.2102 43 1 10.8520 1.9246 3.2488 44 1 3.3454 5.5404 -0.1109 45 1 5.0654 5.1744 -0.4245 46 1 4.5024 6.7462 -2.1776 47 1 2.9102 5.9728 -2.4658 48 1 5.4282 2.6890 -1.9783 49 1 3.8861 2.3744 -2.8284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:42 Heat of formation + Delta-G solvation = -89.693127 kcal Electronic energy + Delta-G solvation = -26077.419676 eV Core-core repulsion = 22552.054522 eV Total energy + Delta-G solvation = -3525.365155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.45151 -37.16067 -36.16730 -35.48688 -35.34757 -33.18314 -31.91859 -29.64464 -28.71440 -26.79373 -25.95487 -24.94477 -23.14852 -22.46611 -21.24275 -20.05661 -19.12226 -18.75205 -17.05017 -16.85713 -16.33107 -15.75948 -15.59041 -15.38619 -15.02387 -14.65683 -14.36941 -14.33144 -13.89135 -13.62895 -13.36333 -12.83867 -12.72679 -12.52237 -12.50241 -12.32921 -12.22624 -12.14852 -12.08539 -11.67349 -11.51185 -11.38105 -11.26649 -11.02742 -10.91255 -10.87330 -10.82858 -10.66017 -10.51716 -10.37514 -10.33077 -10.26475 -9.61845 -9.16630 -9.01129 -8.33678 -8.24254 -5.98374 -3.99920 -0.12320 2.36432 3.33248 3.38240 3.38708 3.40335 3.69400 3.90851 4.28497 4.39836 4.45006 4.50526 4.57572 4.73516 4.84208 4.88489 5.00360 5.16594 5.23401 5.27035 5.37357 5.42847 5.46746 5.55789 5.59108 5.65235 5.70607 5.74354 5.81477 5.86667 5.95826 5.99907 6.12693 6.19014 6.23982 6.31260 6.47064 6.63644 6.92014 7.03720 7.14260 7.22804 7.28829 7.67337 7.82401 8.01091 8.44510 9.06150 9.63586 11.12988 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.003954 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.380629 B = 7079.120053 C = 9007.827333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.117 4.117 4 C 0.049 3.951 5 N -0.514 5.514 6 C 0.045 3.955 7 C -0.077 4.077 8 H 0.056 0.944 9 C -0.123 4.123 10 C 0.026 3.974 11 C -0.514 4.514 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.091 3.909 20 H 0.103 0.897 21 C -0.118 4.118 22 C -0.585 4.585 23 S 2.386 3.614 24 O -0.934 6.934 25 O -0.946 6.946 26 C -0.637 4.637 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.260 0.740 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.145 0.855 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 3.293 -9.755 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.079 4.079 5 N -0.236 5.236 6 C -0.082 4.082 7 C -0.096 4.096 8 H 0.074 0.926 9 C -0.180 4.180 10 C -0.011 4.011 11 C -0.552 4.552 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.020 4.020 20 H 0.121 0.879 21 C -0.156 4.156 22 C -0.716 4.716 23 S 2.569 3.431 24 O -0.931 6.931 25 O -0.943 6.943 26 C -0.769 4.769 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.163 0.837 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.783 3.623 -10.243 20.840 hybrid contribution 0.443 -0.937 0.899 1.372 sum -17.340 2.686 -9.345 19.880 Atomic orbital electron populations 1.21756 0.95961 1.01411 1.01687 1.21496 0.95715 0.96957 1.02160 1.21647 0.94921 0.96556 1.02338 1.22242 0.94982 0.89330 1.01332 1.62213 1.15285 1.11859 1.34291 1.22579 0.85102 1.01407 0.99068 1.21187 0.99452 0.98080 0.90893 0.92590 1.21586 0.98515 0.98210 0.99676 1.19130 0.88107 0.97189 0.96713 1.21165 0.91680 1.41160 1.01204 0.92653 1.25009 0.96567 0.95751 0.97113 1.69953 0.99234 1.47917 1.36411 0.86708 0.77090 0.79672 0.84807 1.20351 1.21378 1.20278 1.22262 0.99872 0.93020 0.86803 0.87947 1.22360 1.05925 0.92498 0.94862 1.30592 1.13934 1.14887 1.12140 1.09107 0.76262 0.80279 0.77406 1.93647 1.29456 1.83313 1.86644 1.93594 1.72370 1.85569 1.42767 1.31261 1.11981 1.19719 1.13893 0.92973 0.92954 0.92695 0.92279 0.91707 0.90897 0.92433 0.94656 0.89617 0.90565 0.94562 0.92598 0.94316 0.93945 0.96519 0.96949 0.93007 0.87680 0.88544 0.84345 0.84572 0.83676 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.08 5.00 -26.73 -0.13 -1.22 16 4 C 0.05 0.55 4.68 -3.82 -0.02 0.54 16 5 N -0.51 -6.13 3.87 -225.38 -0.87 -7.01 16 6 C 0.04 0.69 3.36 -3.82 -0.01 0.67 16 7 C -0.08 -1.46 2.35 -90.62 -0.21 -1.68 16 8 H 0.06 1.08 6.58 -51.93 -0.34 0.74 16 9 C -0.12 -2.19 8.88 37.16 0.33 -1.86 16 10 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 11 C -0.51 -14.02 8.34 -34.44 -0.29 -14.31 16 12 H 0.06 1.47 7.08 -52.48 -0.37 1.10 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.09 0.85 2.46 -66.65 -0.16 0.68 16 20 H 0.10 0.76 6.23 -51.93 -0.32 0.44 16 21 C -0.12 -1.01 5.88 -25.19 -0.15 -1.16 16 22 C -0.59 -4.11 7.31 38.25 0.28 -3.83 16 23 S 2.39 24.10 6.10 -107.50 -0.66 23.44 16 24 O -0.93 -13.51 18.15 -57.73 -1.05 -14.56 16 25 O -0.95 -12.21 18.15 -57.73 -1.05 -13.25 16 26 C -0.64 -5.94 5.60 37.77 0.21 -5.73 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.47 6.62 -51.93 -0.34 0.13 16 34 H 0.04 0.39 7.20 -51.93 -0.37 0.02 16 35 H 0.09 1.12 6.44 -51.93 -0.33 0.79 16 36 H 0.08 1.14 5.68 -51.93 -0.29 0.84 16 37 H 0.04 0.57 6.56 -51.93 -0.34 0.23 16 38 H 0.05 1.11 6.83 -51.93 -0.35 0.75 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.95 5.86 -51.93 -0.30 0.65 16 46 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.15 1.55 5.70 -51.93 -0.30 1.25 16 49 H 0.14 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -34.35 382.71 -11.02 -45.37 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -8.71 Total: -2.34 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -0.17 Total: -27.90 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.14 Total: -32.93 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -2.10 Total: -27.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 24.10 SS G_CDS: -0.66 Total: 23.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.35 -11.02 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.322 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds