Wall clock time and date at job start Tue Mar 31 2020 12:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 C 1.53004 * 109.47053 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47105 * 185.10208 * 4 3 2 6 6 C 1.46902 * 110.99824 * 170.91614 * 5 4 3 7 7 C 1.52997 * 109.47357 * 287.10858 * 6 5 4 8 8 H 1.09000 * 109.47146 * 57.47440 * 7 6 5 9 9 C 1.53005 * 109.47127 * 297.47711 * 7 6 5 10 10 C 1.52996 * 109.47467 * 177.47567 * 7 6 5 11 11 C 1.50704 * 109.47390 * 184.99967 * 10 7 6 12 12 H 1.08004 * 119.99803 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00064 * 179.72308 * 11 10 7 14 14 N 1.31513 * 120.00020 * 0.27999 * 13 11 10 15 15 Si 1.86802 * 119.99970 * 180.27424 * 13 11 10 16 16 H 1.48502 * 109.47040 * 59.99933 * 15 13 11 17 17 H 1.48493 * 109.47101 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46997 * 300.00329 * 15 13 11 19 19 C 1.46899 * 111.00095 * 294.86775 * 5 4 3 20 20 H 1.09003 * 109.63982 * 52.14987 * 19 5 4 21 21 C 1.53876 * 109.64366 * 172.43762 * 19 5 4 22 22 C 1.55058 * 106.62225 * 167.03719 * 21 19 5 23 23 S 1.83288 * 102.56242 * 317.56509 * 22 21 19 24 24 O 1.42099 * 109.35430 * 269.81305 * 23 22 21 25 25 O 1.42106 * 109.47117 * 136.65063 * 23 22 21 26 26 C 1.54164 * 109.64852 * 291.71317 * 19 5 4 27 27 H 1.09003 * 109.46983 * 59.99833 * 1 2 3 28 28 H 1.08993 * 109.47059 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46763 * 300.00585 * 1 2 3 30 30 H 1.08993 * 109.47127 * 239.99882 * 2 1 3 31 31 H 1.08999 * 109.46778 * 119.99704 * 2 1 3 32 32 H 1.08994 * 109.47599 * 60.00363 * 3 2 1 33 33 H 1.08999 * 109.47086 * 299.99515 * 3 2 1 34 34 H 1.09000 * 109.47189 * 65.10260 * 4 3 2 35 35 H 1.08996 * 109.47215 * 305.10289 * 4 3 2 36 36 H 1.09002 * 109.47361 * 167.10734 * 6 5 4 37 37 H 1.08995 * 109.47268 * 47.10736 * 6 5 4 38 38 H 1.08999 * 109.47359 * 184.67907 * 9 7 6 39 39 H 1.09004 * 109.46701 * 304.67859 * 9 7 6 40 40 H 1.09003 * 109.47278 * 64.67749 * 9 7 6 41 41 H 1.09003 * 109.47322 * 65.00160 * 10 7 6 42 42 H 1.08998 * 109.46894 * 305.00008 * 10 7 6 43 43 H 0.97000 * 119.99742 * 179.97438 * 14 13 11 44 44 H 1.08998 * 110.03360 * 286.32358 * 21 19 5 45 45 H 1.08999 * 110.03130 * 47.74582 * 21 19 5 46 46 H 1.08998 * 110.78551 * 199.29854 * 22 21 19 47 47 H 1.08996 * 110.95094 * 75.91051 * 22 21 19 48 48 H 1.08996 * 110.31779 * 331.14260 * 26 19 5 49 49 H 1.09000 * 110.31870 * 93.23721 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8220 0.1238 6 6 5.5118 2.8475 0.3441 7 6 5.8198 2.3837 1.7692 8 1 5.4095 1.3857 1.9231 9 6 5.1883 3.3545 2.7691 10 6 7.3350 2.3500 1.9784 11 6 7.6418 1.7774 3.3382 12 1 6.8365 1.4687 3.9884 13 6 8.9506 1.6427 3.7502 14 7 9.9312 2.0191 2.9588 15 14 9.3311 0.9258 5.4327 16 1 8.7843 -0.4522 5.5188 17 1 10.8019 0.8887 5.6339 18 1 8.7094 1.7715 6.4833 19 6 3.6919 3.6183 -1.0546 20 1 2.6212 3.5283 -1.2380 21 6 4.0502 5.0952 -0.8132 22 6 3.9508 5.8061 -2.1876 23 16 4.7415 4.5998 -3.3185 24 8 6.1339 4.8721 -3.3987 25 8 3.9720 4.4909 -4.5082 26 6 4.4728 3.1148 -2.2847 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 1.0097 -0.9313 35 1 3.9330 0.8517 0.8416 36 1 5.8828 3.8628 0.2043 37 1 5.9991 2.1814 -0.3679 38 1 5.4766 3.0719 3.7816 39 1 5.5356 4.3667 2.5616 40 1 4.1029 3.3166 2.6764 41 1 7.7335 3.3624 1.9123 42 1 7.7941 1.7279 1.2102 43 1 10.8520 1.9246 3.2488 44 1 3.3454 5.5404 -0.1109 45 1 5.0654 5.1744 -0.4245 46 1 4.5024 6.7462 -2.1776 47 1 2.9102 5.9728 -2.4658 48 1 5.4282 2.6890 -1.9783 49 1 3.8861 2.3744 -2.8284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:41 Heat of formation + Delta-G solvation = -113.249275 kcal Electronic energy + Delta-G solvation = -26078.441148 eV Core-core repulsion = 22552.054522 eV Total energy + Delta-G solvation = -3526.386626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41035 -38.08990 -37.11670 -36.85137 -36.18874 -34.62055 -33.43427 -30.38172 -29.81914 -28.55200 -27.08095 -25.84610 -24.80901 -23.31852 -22.03567 -21.25118 -20.20981 -19.72255 -18.47988 -17.85307 -17.67193 -16.69933 -16.59776 -16.32759 -16.24322 -16.03571 -15.62948 -15.11950 -14.84202 -14.62852 -14.42467 -14.07469 -14.03186 -13.61208 -13.40921 -13.26573 -13.22683 -13.20072 -13.10289 -12.92169 -12.83378 -12.71704 -12.46654 -12.25487 -12.16889 -12.09312 -11.90477 -11.75539 -11.71202 -11.61288 -11.34365 -11.19249 -11.11381 -10.97080 -10.86978 -10.50979 -9.26119 -8.15844 -6.24843 -0.90353 1.40456 1.42728 1.50456 1.61725 2.42431 2.59632 2.84456 3.08335 3.17763 3.52216 3.68862 3.72242 3.87107 4.04497 4.05770 4.16527 4.21781 4.33510 4.41026 4.50002 4.55423 4.55883 4.64517 4.78873 4.82070 4.84655 4.90490 4.93728 4.99520 5.03959 5.07716 5.14697 5.20182 5.21880 5.32757 5.35725 5.48306 5.51444 5.55302 5.57606 5.61164 5.84456 5.92014 6.07162 6.19732 6.33162 6.91614 7.43495 8.95876 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.003954 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.380629 B = 7079.120053 C = 9007.827333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.108 4.108 4 C 0.046 3.954 5 N -0.510 5.510 6 C 0.054 3.946 7 C -0.068 4.068 8 H 0.051 0.949 9 C -0.112 4.112 10 C 0.030 3.970 11 C -0.526 4.526 12 H 0.061 0.939 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.087 3.913 20 H 0.136 0.864 21 C -0.123 4.123 22 C -0.552 4.552 23 S 2.384 3.616 24 O -0.989 6.989 25 O -0.977 6.977 26 C -0.632 4.632 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.040 0.960 40 H 0.070 0.930 41 H -0.009 1.009 42 H -0.019 1.019 43 H 0.261 0.739 44 H 0.128 0.872 45 H 0.078 0.922 46 H 0.154 0.846 47 H 0.172 0.828 48 H 0.127 0.873 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.268 3.902 -9.128 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.081 4.081 5 N -0.232 5.232 6 C -0.073 4.073 7 C -0.087 4.087 8 H 0.069 0.931 9 C -0.169 4.169 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.079 0.921 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.783 3.217 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.023 4.023 20 H 0.153 0.847 21 C -0.161 4.161 22 C -0.685 4.685 23 S 2.573 3.427 24 O -0.986 6.986 25 O -0.974 6.974 26 C -0.764 4.764 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.009 0.991 42 H 0.000 1.000 43 H 0.070 0.930 44 H 0.146 0.854 45 H 0.097 0.903 46 H 0.172 0.828 47 H 0.189 0.811 48 H 0.145 0.855 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.857 4.214 -9.647 23.363 hybrid contribution 1.361 -1.128 0.704 1.903 sum -19.496 3.086 -8.943 21.670 Atomic orbital electron populations 1.21735 0.94887 1.01807 1.02149 1.21495 0.96616 0.96599 1.01703 1.21586 0.92780 0.97031 1.03146 1.22281 0.96688 0.88681 1.00488 1.62137 1.12391 1.12572 1.36074 1.22283 0.87755 1.01078 0.96209 1.20968 0.95227 0.98588 0.93957 0.93102 1.21471 1.00066 0.97676 0.97675 1.19032 0.92121 0.94641 0.94924 1.21598 0.91987 1.40659 1.02214 0.92117 1.25925 0.96523 0.96219 1.01199 1.70100 0.99592 1.49426 1.38549 0.85610 0.76857 0.79251 0.79999 1.19343 1.21220 1.19121 1.22526 1.01517 0.92953 0.85280 0.84679 1.22433 1.05582 0.92185 0.95929 1.30422 1.15570 1.13523 1.09005 1.08933 0.75043 0.81051 0.77697 1.93578 1.32954 1.84320 1.87722 1.93546 1.72327 1.86307 1.45232 1.31184 1.11505 1.19739 1.13967 0.92091 0.92688 0.92607 0.92203 0.92841 0.91038 0.90501 0.94483 0.91867 0.90307 0.95726 0.94897 0.94098 0.91122 0.99081 1.00041 0.93036 0.85422 0.90309 0.82774 0.81066 0.85451 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.13 -1.95 5.93 30.59 0.18 -1.76 16 3 C -0.11 -1.69 5.00 30.59 0.15 -1.53 16 4 C 0.05 0.98 4.68 86.30 0.40 1.38 16 5 N -0.51 -11.22 3.87 -866.95 -3.36 -14.58 16 6 C 0.05 1.66 3.36 86.30 0.29 1.95 16 7 C -0.07 -2.64 2.35 -10.79 -0.03 -2.67 16 8 H 0.05 2.00 6.58 -2.39 -0.02 1.99 16 9 C -0.11 -3.91 8.88 71.98 0.64 -3.27 16 10 C 0.03 1.57 4.45 29.85 0.13 1.70 16 11 C -0.53 -29.43 8.34 25.60 0.21 -29.21 16 12 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 13 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 14 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 15 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C 0.09 1.37 2.46 45.61 0.11 1.48 16 20 H 0.14 1.32 6.23 -2.39 -0.01 1.31 16 21 C -0.12 -1.69 5.88 31.59 0.19 -1.50 16 22 C -0.55 -5.79 7.31 72.69 0.53 -5.26 16 23 S 2.38 46.20 6.10 -56.49 -0.34 45.86 16 24 O -0.99 -29.62 18.15 -127.47 -2.31 -31.93 16 25 O -0.98 -24.31 18.15 -127.47 -2.31 -26.62 16 26 C -0.63 -10.97 5.60 72.38 0.41 -10.56 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 0.92 6.62 -2.39 -0.02 0.91 16 34 H 0.04 0.77 7.20 -2.39 -0.02 0.76 16 35 H 0.06 1.63 6.44 -2.39 -0.02 1.62 16 36 H 0.08 2.38 5.68 -2.39 -0.01 2.36 16 37 H 0.02 0.81 6.56 -2.39 -0.02 0.79 16 38 H 0.03 1.28 6.83 -2.39 -0.02 1.26 16 39 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.07 2.07 7.82 -2.39 -0.02 2.05 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 43 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.42 5.86 -2.39 -0.01 1.41 16 46 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.17 0.74 8.14 -2.39 -0.02 0.73 16 48 H 0.13 2.77 5.70 -2.39 -0.01 2.76 16 49 H 0.16 2.08 8.10 -2.39 -0.02 2.06 16 Total: -1.00 -77.19 382.71 -0.71 -77.90 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.91 Total: 10.21 kcal Atomic # 6 Polarization: -54.47 SS G_CDS: 4.40 Total: -50.07 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -3.07 Total: -71.72 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -4.63 Total: -58.55 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 46.20 SS G_CDS: -0.34 Total: 45.86 kcal Total: -77.19 -0.71 -77.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.349 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds