Wall clock time and date at job start Tue Mar 31 2020 12:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47353 * 176.73083 * 4 3 2 6 6 C 1.46900 * 111.00145 * 159.70153 * 5 4 3 7 7 C 1.53000 * 109.47473 * 287.41439 * 6 5 4 8 8 H 1.08996 * 109.46773 * 56.15916 * 7 6 5 9 9 C 1.53000 * 109.46982 * 296.15886 * 7 6 5 10 10 C 1.53000 * 109.46935 * 176.15886 * 7 6 5 11 11 C 1.50702 * 109.46485 * 185.00117 * 10 7 6 12 12 H 1.08002 * 120.00468 * 359.97438 * 11 10 7 13 13 C 1.37879 * 119.99346 * 179.97438 * 11 10 7 14 14 N 1.31514 * 120.00473 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99670 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47327 * 60.00295 * 15 13 11 17 17 H 1.48503 * 109.46992 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47176 * 300.00134 * 15 13 11 19 19 C 1.46897 * 111.00053 * 283.66199 * 5 4 3 20 20 H 1.09003 * 110.01538 * 49.82938 * 19 5 4 21 21 C 1.53876 * 110.02835 * 288.44675 * 19 5 4 22 22 C 1.54158 * 108.70595 * 193.52829 * 21 19 5 23 23 S 1.82919 * 105.08577 * 27.90974 * 22 21 19 24 24 O 1.42100 * 109.35415 * 111.27255 * 23 22 21 25 25 O 1.42103 * 109.35568 * 244.34049 * 23 22 21 26 26 C 1.55408 * 110.04327 * 171.10476 * 19 5 4 27 27 H 1.09000 * 109.47011 * 299.99910 * 1 2 3 28 28 H 1.09001 * 109.46634 * 59.99940 * 1 2 3 29 29 H 1.08995 * 109.46733 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47011 * 240.00090 * 2 1 3 31 31 H 1.09001 * 109.47295 * 120.00421 * 2 1 3 32 32 H 1.09008 * 109.46786 * 60.00274 * 3 2 1 33 33 H 1.08994 * 109.47378 * 299.99971 * 3 2 1 34 34 H 1.09006 * 109.47132 * 56.73491 * 4 3 2 35 35 H 1.08994 * 109.47643 * 296.73821 * 4 3 2 36 36 H 1.09007 * 109.46882 * 47.41795 * 6 5 4 37 37 H 1.08995 * 109.46945 * 167.40878 * 6 5 4 38 38 H 1.09000 * 109.47168 * 184.59190 * 9 7 6 39 39 H 1.09005 * 109.46882 * 304.58994 * 9 7 6 40 40 H 1.09000 * 109.47197 * 64.59187 * 9 7 6 41 41 H 1.09003 * 109.47051 * 304.99661 * 10 7 6 42 42 H 1.08995 * 109.46837 * 64.99843 * 10 7 6 43 43 H 0.97003 * 120.00102 * 179.97438 * 14 13 11 44 44 H 1.09002 * 109.64369 * 73.68012 * 21 19 5 45 45 H 1.08993 * 109.64739 * 313.38387 * 21 19 5 46 46 H 1.09000 * 110.32096 * 269.00831 * 22 21 19 47 47 H 1.09000 * 110.32292 * 146.80874 * 22 21 19 48 48 H 1.08994 * 110.76006 * 43.43995 * 26 19 5 49 49 H 1.09008 * 110.95525 * 279.88462 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8252 -0.0783 6 6 5.4478 2.9199 0.3934 7 6 5.4815 2.7609 1.9147 8 1 5.0086 1.8188 2.1921 9 6 4.7265 3.9216 2.5656 10 6 6.9339 2.7636 2.3957 11 6 6.9732 2.4844 3.8761 12 1 6.0541 2.3219 4.4196 13 6 8.1825 2.4366 4.5367 14 7 9.3016 2.6351 3.8750 15 14 8.2312 2.0914 6.3719 16 1 7.6221 0.7644 6.6423 17 1 9.6409 2.0939 6.8387 18 1 7.4694 3.1421 7.0936 19 6 3.9305 3.3524 -1.4434 20 1 2.9224 3.1748 -1.8179 21 6 4.9618 2.6812 -2.3674 22 6 5.0390 3.4791 -3.6841 23 16 4.5814 5.1912 -3.2308 24 8 5.7220 6.0304 -3.3487 25 8 3.3717 5.5448 -3.8872 26 6 4.2406 4.8751 -1.4579 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9564 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 3.9337 0.8787 -0.8584 35 1 3.9330 0.9803 0.9186 36 1 6.0428 2.1314 -0.0677 37 1 5.8588 3.8918 0.1204 38 1 4.8195 3.8533 3.6495 39 1 5.1484 4.8667 2.2236 40 1 3.6738 3.8718 2.2874 41 1 7.4936 1.9928 1.8657 42 1 7.3804 3.7379 2.1976 43 1 10.1523 2.6018 4.3399 44 1 4.6539 1.6568 -2.5772 45 1 5.9386 2.6765 -1.8839 46 1 4.3328 3.0786 -4.4114 47 1 6.0524 3.4517 -4.0845 48 1 5.1176 5.0966 -0.8498 49 1 3.3791 5.4517 -1.1207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:52 Heat of formation + Delta-G solvation = -91.214246 kcal Electronic energy + Delta-G solvation = -25986.159576 eV Core-core repulsion = 22460.728461 eV Total energy + Delta-G solvation = -3525.431115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.42884 -37.17567 -36.18153 -35.49015 -35.33548 -33.09917 -31.83917 -30.13322 -28.56140 -26.88568 -25.76493 -24.61294 -23.30265 -22.78390 -21.21676 -20.08698 -18.98947 -18.82058 -17.03436 -16.85411 -16.35118 -15.93941 -15.57402 -15.08163 -14.90366 -14.70161 -14.63674 -14.40818 -13.91973 -13.63524 -13.07896 -12.97382 -12.82567 -12.52288 -12.44745 -12.32151 -12.20759 -12.19284 -12.10866 -11.68995 -11.49079 -11.41595 -11.21340 -11.07720 -10.93299 -10.88970 -10.83754 -10.67600 -10.51853 -10.42778 -10.30706 -10.28816 -9.65154 -9.18546 -9.02787 -8.35551 -8.21093 -6.00592 -4.01916 -0.12795 2.33456 3.32168 3.37099 3.39143 3.41289 3.71372 3.90831 4.18683 4.33467 4.44550 4.49061 4.58172 4.69706 4.85358 4.90041 5.03954 5.17383 5.22158 5.32860 5.35399 5.39771 5.46672 5.51849 5.57408 5.63910 5.69191 5.73992 5.79721 5.84565 5.92396 6.01776 6.10014 6.20162 6.26013 6.31577 6.46711 6.63089 6.90714 7.04215 7.13685 7.22321 7.27879 7.64497 7.79926 7.98834 8.42610 9.04063 9.61739 11.10797 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003884 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.043666 B = 7207.437676 C = 9224.792076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.114 4.114 4 C 0.046 3.954 5 N -0.512 5.512 6 C 0.048 3.952 7 C -0.078 4.078 8 H 0.057 0.943 9 C -0.123 4.123 10 C 0.027 3.973 11 C -0.514 4.514 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.086 3.914 20 H 0.103 0.897 21 C -0.156 4.156 22 C -0.587 4.587 23 S 2.384 3.616 24 O -0.939 6.939 25 O -0.942 6.942 26 C -0.579 4.579 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.146 0.854 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 -2.125 -14.203 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.082 4.082 5 N -0.235 5.235 6 C -0.078 4.078 7 C -0.097 4.097 8 H 0.075 0.925 9 C -0.181 4.181 10 C -0.011 4.011 11 C -0.552 4.552 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.025 4.025 20 H 0.121 0.879 21 C -0.196 4.196 22 C -0.717 4.717 23 S 2.567 3.433 24 O -0.936 6.936 25 O -0.939 6.939 26 C -0.709 4.709 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.164 0.836 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.104 -0.980 -14.412 20.188 hybrid contribution 0.815 -1.450 0.928 1.905 sum -13.288 -2.430 -13.484 19.086 Atomic orbital electron populations 1.21755 0.95947 1.01346 1.01791 1.21505 0.95777 0.97048 1.01991 1.21605 0.94777 0.96229 1.02617 1.22289 0.95380 0.88540 1.01951 1.62214 1.22872 1.20547 1.17830 1.22530 0.86362 1.00837 0.98120 1.21208 0.99799 0.98290 0.90396 0.92513 1.21592 0.98313 0.97316 1.00850 1.19125 0.88991 0.97065 0.95886 1.21169 0.92254 1.48006 0.93766 0.92637 1.25006 0.95832 0.95528 0.98056 1.69948 0.97536 1.50174 1.35937 0.86706 0.76891 0.78825 0.85852 1.20336 1.21372 1.20260 1.22457 0.99405 0.90234 0.90452 0.87861 1.22740 1.02922 1.01571 0.92356 1.30407 1.12480 1.22488 1.06357 1.09181 0.75684 0.78624 0.79784 1.93627 1.50736 1.63648 1.85563 1.93609 1.45730 1.81971 1.72552 1.30863 1.12988 1.04282 1.22780 0.92643 0.92936 0.93008 0.92386 0.91796 0.90999 0.92305 0.94537 0.89607 0.94484 0.90863 0.92586 0.94339 0.93922 0.96988 0.96569 0.93012 0.88972 0.88785 0.84766 0.84485 0.83581 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.11 -1.10 5.37 -26.73 -0.14 -1.24 16 4 C 0.05 0.51 4.72 -3.82 -0.02 0.49 16 5 N -0.51 -6.11 3.85 -224.58 -0.87 -6.98 16 6 C 0.05 0.71 3.06 -3.82 -0.01 0.70 16 7 C -0.08 -1.46 2.35 -90.62 -0.21 -1.68 16 8 H 0.06 1.08 6.48 -51.93 -0.34 0.75 16 9 C -0.12 -2.24 8.89 37.16 0.33 -1.91 16 10 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 11 C -0.51 -13.92 8.34 -34.44 -0.29 -14.20 16 12 H 0.06 1.47 7.07 -52.49 -0.37 1.10 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 15 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C 0.09 0.81 2.53 -65.98 -0.17 0.64 16 20 H 0.10 0.82 6.66 -51.93 -0.35 0.48 16 21 C -0.16 -1.31 5.11 -25.67 -0.13 -1.44 16 22 C -0.59 -4.20 7.26 37.76 0.27 -3.92 16 23 S 2.38 23.08 6.09 -107.50 -0.66 22.42 16 24 O -0.94 -12.83 18.15 -57.73 -1.05 -13.88 16 25 O -0.94 -11.79 18.15 -57.73 -1.05 -12.84 16 26 C -0.58 -5.41 6.77 38.44 0.26 -5.15 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 34 H 0.04 0.36 6.57 -51.93 -0.34 0.02 16 35 H 0.09 1.10 6.24 -51.93 -0.32 0.78 16 36 H 0.04 0.55 6.92 -51.93 -0.36 0.19 16 37 H 0.07 1.07 5.80 -51.93 -0.30 0.76 16 38 H 0.06 1.12 6.83 -51.93 -0.35 0.76 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.09 0.69 7.12 -51.93 -0.37 0.32 16 45 H 0.09 0.88 6.06 -51.93 -0.31 0.57 16 46 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.15 1.47 6.00 -51.93 -0.31 1.16 16 49 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -33.99 382.93 -10.94 -44.94 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.70 Total: -2.32 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: -0.12 Total: -27.74 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: -0.13 Total: -32.65 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -2.09 Total: -26.72 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 23.08 SS G_CDS: -0.66 Total: 22.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.99 -10.94 -44.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.278 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds