Wall clock time and date at job start Tue Mar 31 2020 12:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47153 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47353 * 176.73083 * 4 3 2 6 6 C 1.46900 * 111.00145 * 159.70153 * 5 4 3 7 7 C 1.53000 * 109.47473 * 287.41439 * 6 5 4 8 8 H 1.08996 * 109.46773 * 56.15916 * 7 6 5 9 9 C 1.53000 * 109.46982 * 296.15886 * 7 6 5 10 10 C 1.53000 * 109.46935 * 176.15886 * 7 6 5 11 11 C 1.50702 * 109.46485 * 185.00117 * 10 7 6 12 12 H 1.08002 * 120.00468 * 359.97438 * 11 10 7 13 13 C 1.37879 * 119.99346 * 179.97438 * 11 10 7 14 14 N 1.31514 * 120.00473 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99670 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47327 * 60.00295 * 15 13 11 17 17 H 1.48503 * 109.46992 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47176 * 300.00134 * 15 13 11 19 19 C 1.46897 * 111.00053 * 283.66199 * 5 4 3 20 20 H 1.09003 * 110.01538 * 49.82938 * 19 5 4 21 21 C 1.53876 * 110.02835 * 288.44675 * 19 5 4 22 22 C 1.54158 * 108.70595 * 193.52829 * 21 19 5 23 23 S 1.82919 * 105.08577 * 27.90974 * 22 21 19 24 24 O 1.42100 * 109.35415 * 111.27255 * 23 22 21 25 25 O 1.42103 * 109.35568 * 244.34049 * 23 22 21 26 26 C 1.55408 * 110.04327 * 171.10476 * 19 5 4 27 27 H 1.09000 * 109.47011 * 299.99910 * 1 2 3 28 28 H 1.09001 * 109.46634 * 59.99940 * 1 2 3 29 29 H 1.08995 * 109.46733 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47011 * 240.00090 * 2 1 3 31 31 H 1.09001 * 109.47295 * 120.00421 * 2 1 3 32 32 H 1.09008 * 109.46786 * 60.00274 * 3 2 1 33 33 H 1.08994 * 109.47378 * 299.99971 * 3 2 1 34 34 H 1.09006 * 109.47132 * 56.73491 * 4 3 2 35 35 H 1.08994 * 109.47643 * 296.73821 * 4 3 2 36 36 H 1.09007 * 109.46882 * 47.41795 * 6 5 4 37 37 H 1.08995 * 109.46945 * 167.40878 * 6 5 4 38 38 H 1.09000 * 109.47168 * 184.59190 * 9 7 6 39 39 H 1.09005 * 109.46882 * 304.58994 * 9 7 6 40 40 H 1.09000 * 109.47197 * 64.59187 * 9 7 6 41 41 H 1.09003 * 109.47051 * 304.99661 * 10 7 6 42 42 H 1.08995 * 109.46837 * 64.99843 * 10 7 6 43 43 H 0.97003 * 120.00102 * 179.97438 * 14 13 11 44 44 H 1.09002 * 109.64369 * 73.68012 * 21 19 5 45 45 H 1.08993 * 109.64739 * 313.38387 * 21 19 5 46 46 H 1.09000 * 110.32096 * 269.00831 * 22 21 19 47 47 H 1.09000 * 110.32292 * 146.80874 * 22 21 19 48 48 H 1.08994 * 110.76006 * 43.43995 * 26 19 5 49 49 H 1.09008 * 110.95525 * 279.88462 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8252 -0.0783 6 6 5.4478 2.9199 0.3934 7 6 5.4815 2.7609 1.9147 8 1 5.0086 1.8188 2.1921 9 6 4.7265 3.9216 2.5656 10 6 6.9339 2.7636 2.3957 11 6 6.9732 2.4844 3.8761 12 1 6.0541 2.3219 4.4196 13 6 8.1825 2.4366 4.5367 14 7 9.3016 2.6351 3.8750 15 14 8.2312 2.0914 6.3719 16 1 7.6221 0.7644 6.6423 17 1 9.6409 2.0939 6.8387 18 1 7.4694 3.1421 7.0936 19 6 3.9305 3.3524 -1.4434 20 1 2.9224 3.1748 -1.8179 21 6 4.9618 2.6812 -2.3674 22 6 5.0390 3.4791 -3.6841 23 16 4.5814 5.1912 -3.2308 24 8 5.7220 6.0304 -3.3487 25 8 3.3717 5.5448 -3.8872 26 6 4.2406 4.8751 -1.4579 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9564 0.8901 33 1 1.6768 1.9564 -0.8899 34 1 3.9337 0.8787 -0.8584 35 1 3.9330 0.9803 0.9186 36 1 6.0428 2.1314 -0.0677 37 1 5.8588 3.8918 0.1204 38 1 4.8195 3.8533 3.6495 39 1 5.1484 4.8667 2.2236 40 1 3.6738 3.8718 2.2874 41 1 7.4936 1.9928 1.8657 42 1 7.3804 3.7379 2.1976 43 1 10.1523 2.6018 4.3399 44 1 4.6539 1.6568 -2.5772 45 1 5.9386 2.6765 -1.8839 46 1 4.3328 3.0786 -4.4114 47 1 6.0524 3.4517 -4.0845 48 1 5.1176 5.0966 -0.8498 49 1 3.3791 5.4517 -1.1207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:51 Heat of formation + Delta-G solvation = -114.100638 kcal Electronic energy + Delta-G solvation = -25987.152005 eV Core-core repulsion = 22460.728461 eV Total energy + Delta-G solvation = -3526.423544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.36994 -38.07632 -37.10198 -36.84718 -36.16306 -34.59545 -33.29636 -30.85100 -29.62426 -28.62433 -26.94760 -25.52488 -24.72858 -23.78616 -21.99098 -21.28722 -20.02759 -19.78720 -18.48082 -17.77937 -17.66003 -16.88766 -16.54095 -16.33260 -15.98221 -15.88813 -15.67259 -15.33760 -14.74470 -14.69345 -14.40234 -14.16144 -13.82259 -13.75632 -13.34401 -13.28222 -13.22775 -13.14180 -13.06812 -12.97152 -12.82897 -12.72694 -12.46446 -12.33772 -12.16791 -12.07044 -11.82868 -11.76190 -11.73169 -11.62826 -11.31104 -11.23893 -11.14769 -10.98762 -10.86597 -10.50344 -9.17249 -8.15838 -6.24106 -0.88979 1.40677 1.42559 1.50168 1.60198 2.42699 2.66573 2.85910 3.10119 3.18006 3.45115 3.59413 3.77565 3.93363 3.98009 4.04932 4.16756 4.24238 4.35865 4.42862 4.50135 4.55509 4.57919 4.66657 4.76494 4.80250 4.85720 4.90463 4.95149 4.98047 5.02634 5.05718 5.12055 5.13474 5.22206 5.31879 5.36525 5.49103 5.51217 5.55431 5.57491 5.61129 5.84714 5.92622 6.10465 6.23066 6.34396 6.92061 7.44021 8.95696 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003884 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.043666 B = 7207.437676 C = 9224.792076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.107 4.107 4 C 0.045 3.955 5 N -0.515 5.515 6 C 0.059 3.941 7 C -0.069 4.069 8 H 0.053 0.947 9 C -0.114 4.114 10 C 0.032 3.968 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.955 3.045 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.269 1.269 19 C 0.081 3.919 20 H 0.128 0.872 21 C -0.158 4.158 22 C -0.562 4.562 23 S 2.394 3.606 24 O -0.986 6.986 25 O -0.971 6.971 26 C -0.578 4.578 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.036 0.964 40 H 0.066 0.934 41 H -0.013 1.013 42 H -0.011 1.011 43 H 0.261 0.739 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.163 0.837 47 H 0.150 0.850 48 H 0.136 0.864 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 -3.276 -14.974 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.082 4.082 5 N -0.238 5.238 6 C -0.069 4.069 7 C -0.088 4.088 8 H 0.072 0.928 9 C -0.171 4.171 10 C -0.005 4.005 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.029 4.029 20 H 0.146 0.854 21 C -0.198 4.198 22 C -0.695 4.695 23 S 2.581 3.419 24 O -0.983 6.983 25 O -0.968 6.968 26 C -0.709 4.709 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.008 0.992 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.100 0.900 46 H 0.181 0.819 47 H 0.169 0.831 48 H 0.154 0.846 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.935 -2.102 -15.186 22.112 hybrid contribution 1.363 -1.142 1.150 2.118 sum -14.572 -3.244 -14.036 20.491 Atomic orbital electron populations 1.21746 0.95280 1.01803 1.01922 1.21490 0.96330 0.96366 1.01988 1.21546 0.93427 0.96884 1.02677 1.22320 0.96406 0.87952 1.01560 1.62099 1.20472 1.21405 1.19795 1.22226 0.88531 1.00945 0.95188 1.20995 0.95881 0.98496 0.93463 0.92828 1.21488 0.99622 0.96873 0.99143 1.19016 0.92294 0.94495 0.94743 1.21603 0.92386 1.47260 0.95270 0.92330 1.25882 0.95535 0.95445 1.02832 1.70082 0.98096 1.51498 1.37829 0.85648 0.76975 0.79120 0.80202 1.19264 1.21155 1.19442 1.22649 1.01153 0.89864 0.89248 0.85390 1.22759 1.01982 1.02609 0.92442 1.30242 1.14091 1.18651 1.06478 1.08712 0.74197 0.79522 0.79434 1.93566 1.52105 1.66388 1.86219 1.93565 1.46683 1.83344 1.73217 1.30824 1.13108 1.04776 1.22188 0.93140 0.92181 0.92443 0.91408 0.92829 0.92300 0.90829 0.92882 0.91863 0.94544 0.90800 0.94902 0.94465 0.91529 0.99421 0.99218 0.93029 0.87007 0.89979 0.81927 0.83141 0.84564 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.86 5.93 30.60 0.18 -1.68 16 3 C -0.11 -1.79 5.37 30.60 0.16 -1.63 16 4 C 0.05 0.90 4.72 86.30 0.41 1.31 16 5 N -0.52 -11.32 3.85 -864.42 -3.33 -14.66 16 6 C 0.06 1.71 3.06 86.30 0.26 1.97 16 7 C -0.07 -2.63 2.35 -10.79 -0.03 -2.66 16 8 H 0.05 2.06 6.48 -2.39 -0.02 2.05 16 9 C -0.11 -4.11 8.89 71.98 0.64 -3.47 16 10 C 0.03 1.62 4.45 29.85 0.13 1.75 16 11 C -0.53 -29.13 8.34 25.60 0.21 -28.92 16 12 H 0.06 3.13 7.07 -2.91 -0.02 3.11 16 13 C 0.00 0.02 5.46 84.66 0.46 0.48 16 14 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 15 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 C 0.08 1.32 2.53 46.04 0.12 1.43 16 20 H 0.13 1.51 6.66 -2.39 -0.02 1.50 16 21 C -0.16 -2.16 5.11 31.28 0.16 -2.00 16 22 C -0.56 -6.24 7.26 72.37 0.53 -5.71 16 23 S 2.39 43.51 6.09 -56.49 -0.34 43.17 16 24 O -0.99 -27.06 18.15 -127.47 -2.31 -29.38 16 25 O -0.97 -23.06 18.15 -127.47 -2.31 -25.37 16 26 C -0.58 -9.98 6.77 72.81 0.49 -9.49 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.02 6.75 -2.39 -0.02 1.00 16 34 H 0.05 0.89 6.57 -2.38 -0.02 0.88 16 35 H 0.06 1.57 6.24 -2.39 -0.01 1.55 16 36 H 0.04 1.06 6.92 -2.38 -0.02 1.05 16 37 H 0.07 2.15 5.80 -2.39 -0.01 2.13 16 38 H 0.03 1.31 6.83 -2.39 -0.02 1.29 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.07 2.07 7.85 -2.39 -0.02 2.05 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.11 1.18 7.12 -2.39 -0.02 1.16 16 45 H 0.08 1.38 6.06 -2.39 -0.01 1.36 16 46 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.14 2.69 6.00 -2.39 -0.01 2.68 16 49 H 0.16 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -74.61 382.93 -0.63 -75.24 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.91 Total: 10.94 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 4.45 Total: -49.90 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -3.05 Total: -70.73 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -4.63 Total: -54.75 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.34 Total: 43.17 kcal Total: -74.61 -0.63 -75.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.862 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds