Wall clock time and date at job start Tue Mar 31 2020 11:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 C 1.53008 * 109.46849 * 119.99794 * 2 1 3 5 5 C 1.52995 * 109.47082 * 65.00310 * 4 2 1 6 6 N 1.46504 * 109.46914 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99574 * 274.99597 * 6 5 4 8 8 C 1.50699 * 109.47382 * 274.99862 * 7 6 5 9 9 H 1.08001 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00170 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00082 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99907 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46897 * 90.00402 * 12 10 8 14 14 H 1.48506 * 109.47118 * 210.00102 * 12 10 8 15 15 H 1.48500 * 109.47052 * 330.00291 * 12 10 8 16 16 S 1.65599 * 120.00054 * 94.99871 * 6 5 4 17 17 O 1.42105 * 104.27655 * 153.92607 * 16 6 5 18 18 O 1.42101 * 104.27764 * 26.07044 * 16 6 5 19 19 C 1.81395 * 104.44748 * 269.99913 * 16 6 5 20 20 C 1.52999 * 109.46986 * 180.02562 * 19 16 6 21 21 C 1.53001 * 112.85302 * 48.80114 * 20 19 16 22 22 C 1.53780 * 113.61651 * 277.49533 * 20 19 16 23 23 C 1.53772 * 87.08588 * 220.01937 * 22 20 19 24 24 C 1.53781 * 87.08051 * 25.43133 * 23 22 20 25 25 H 1.08999 * 109.47110 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47238 * 300.00217 * 1 2 3 27 27 H 1.08999 * 109.46745 * 59.99917 * 1 2 3 28 28 H 1.08998 * 109.47238 * 239.99783 * 2 1 3 29 29 H 1.09003 * 109.47328 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46813 * 300.00028 * 3 2 1 31 31 H 1.08998 * 109.47127 * 59.99714 * 3 2 1 32 32 H 1.09000 * 109.46853 * 304.99875 * 4 2 1 33 33 H 1.09000 * 109.47114 * 185.00221 * 4 2 1 34 34 H 1.09000 * 109.47632 * 60.00042 * 5 4 2 35 35 H 1.09000 * 109.47073 * 299.99936 * 5 4 2 36 36 H 1.08995 * 109.47675 * 35.00479 * 7 6 5 37 37 H 1.09001 * 109.46819 * 155.00490 * 7 6 5 38 38 H 0.97001 * 119.99957 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.47393 * 299.99669 * 19 16 6 40 40 H 1.08994 * 109.47678 * 60.00285 * 19 16 6 41 41 H 1.09001 * 109.47311 * 69.66662 * 21 20 19 42 42 H 1.08995 * 109.47567 * 189.66819 * 21 20 19 43 43 H 1.09002 * 109.47157 * 309.66785 * 21 20 19 44 44 H 1.09008 * 113.61346 * 334.56962 * 22 20 19 45 45 H 1.09006 * 113.61552 * 105.46261 * 22 20 19 46 46 H 1.09003 * 113.61639 * 270.88463 * 23 22 20 47 47 H 1.09001 * 113.61787 * 139.97925 * 23 22 20 48 48 H 1.08998 * 113.61492 * 220.02013 * 24 23 22 49 49 H 1.08999 * 113.61379 * 89.11472 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 1.6352 -2.1954 1.1881 6 7 2.1230 -2.8859 2.3846 7 6 3.4912 -3.4083 2.4222 8 6 3.5233 -4.7781 1.7949 9 1 2.6154 -5.2157 1.4067 10 6 4.7116 -5.4728 1.7167 11 7 4.7398 -6.6681 1.1688 12 14 6.2818 -4.7163 2.3889 13 1 6.4419 -5.0945 3.8159 14 1 7.4442 -5.2155 1.6111 15 1 6.2075 -3.2376 2.2739 16 16 1.1278 -3.0758 3.6945 17 8 1.6269 -4.2343 4.3487 18 8 -0.1826 -3.0518 3.1455 19 6 1.4220 -1.5979 4.7044 20 6 0.5497 -1.6564 5.9600 21 6 0.6402 -3.0010 6.6844 22 6 -0.8924 -1.1738 5.7314 23 6 -0.7972 -0.4879 7.1043 24 6 0.7248 -0.4434 6.8888 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6550 0.3004 35 1 0.5489 -2.2724 1.1421 36 1 4.1508 -2.7398 1.8690 37 1 3.8263 -3.4747 3.4573 38 1 5.5759 -7.1567 1.1134 39 1 2.4722 -1.5586 4.9936 40 1 1.1703 -0.7078 4.1279 41 1 1.6268 -3.1048 7.1360 42 1 -0.1219 -3.0469 7.4622 43 1 0.4804 -3.8095 5.9710 44 1 -0.9925 -0.4754 4.9004 45 1 -1.6230 -1.9819 5.6966 46 1 -1.1023 -1.1263 7.9335 47 1 -1.2630 0.4971 7.1337 48 1 1.2998 -0.6619 7.7887 49 1 1.0668 0.4546 6.3744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603281372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:16 Heat of formation + Delta-G solvation = -70.241114 kcal Electronic energy + Delta-G solvation = -26852.173806 eV Core-core repulsion = 23327.652154 eV Total energy + Delta-G solvation = -3524.521652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.64570 -37.39940 -36.50472 -35.35010 -34.92975 -32.37890 -31.05155 -29.34017 -27.81234 -27.13019 -26.88726 -25.82678 -23.20603 -22.75854 -21.62392 -19.88295 -18.47579 -18.13349 -17.12917 -16.91374 -16.00469 -15.86054 -15.28439 -15.14833 -14.84281 -14.47418 -14.19783 -13.91249 -13.58886 -13.53558 -13.11808 -12.76661 -12.57939 -12.44280 -12.39138 -12.29860 -12.13436 -11.90975 -11.75785 -11.59897 -11.43947 -11.27755 -11.20075 -11.11881 -11.00047 -10.95521 -10.71494 -10.69370 -10.54078 -10.38852 -10.28460 -10.19622 -10.15395 -9.76198 -9.48215 -8.56545 -8.05356 -6.05043 -4.03396 0.79483 3.24662 3.29652 3.32481 3.37117 4.23567 4.28029 4.40009 4.42237 4.56228 4.66278 4.72151 4.83446 4.94300 5.00274 5.02566 5.21225 5.24708 5.38331 5.41622 5.47912 5.59063 5.59917 5.61181 5.71148 5.72138 5.73917 5.78603 5.78929 5.80126 5.89099 5.93037 5.97943 6.02984 6.03674 6.22113 6.22510 6.29919 6.35047 6.37542 6.52831 6.57054 6.73728 7.09672 7.39855 7.60939 8.52941 9.01469 9.54072 11.08745 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.006018 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.299820 B = 4651.927580 C = 6450.379178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.139 4.139 5 C 0.117 3.883 6 N -0.981 5.981 7 C 0.226 3.774 8 C -0.525 4.525 9 H 0.078 0.922 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.869 3.131 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.265 1.265 16 S 2.604 3.396 17 O -0.934 6.934 18 O -0.967 6.967 19 C -0.628 4.628 20 C -0.074 4.074 21 C -0.164 4.164 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.122 4.122 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 17.445 6.465 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.178 4.178 5 C -0.009 4.009 6 N -0.818 5.818 7 C 0.103 3.897 8 C -0.564 4.564 9 H 0.096 0.904 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.695 3.305 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.190 1.190 16 S 2.696 3.304 17 O -0.925 6.925 18 O -0.957 6.957 19 C -0.755 4.755 20 C -0.075 4.075 21 C -0.221 4.221 22 C -0.177 4.177 23 C -0.178 4.178 24 C -0.160 4.160 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.396 16.556 6.566 19.690 hybrid contribution 1.468 0.934 0.385 1.782 sum -6.928 17.490 6.951 20.055 Atomic orbital electron populations 1.21936 0.95291 1.02454 1.01307 1.21071 0.95874 0.95883 0.98677 1.21834 1.00954 0.96176 1.01320 1.22204 1.01887 0.96316 0.97400 1.21353 0.99840 0.90254 0.89483 1.57225 1.27444 1.70352 1.26731 1.19436 0.77698 0.95432 0.97160 1.21351 0.96676 0.99482 1.38892 0.90355 1.24858 0.98641 0.94655 0.94797 1.69898 1.26960 1.12051 1.44541 0.86977 0.83682 0.80020 0.79790 1.19833 1.20971 1.18979 1.05230 0.74036 0.76585 0.74537 1.93627 1.80055 1.43050 1.75733 1.93510 1.37982 1.87455 1.76786 1.30838 1.09288 1.24143 1.11202 1.21524 0.95274 0.97054 0.93649 1.22109 1.03646 0.94558 1.01762 1.23182 0.95591 1.00951 0.98005 1.22809 0.96492 1.00919 0.97569 1.22962 0.96685 0.97308 0.99088 0.91795 0.92891 0.92993 0.90666 0.92744 0.92923 0.93015 0.92735 0.91133 0.89322 0.89707 0.94894 0.95460 0.92592 0.85219 0.85604 0.90721 0.91061 0.90801 0.89428 0.90484 0.89948 0.91301 0.91091 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 2 C -0.10 -1.09 2.92 -90.62 -0.26 -1.36 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 4 C -0.14 -1.85 5.01 -26.73 -0.13 -1.99 16 5 C 0.12 1.98 5.41 -4.04 -0.02 1.96 16 6 N -0.98 -19.55 2.70 -115.67 -0.31 -19.86 16 7 C 0.23 5.25 4.08 -5.19 -0.02 5.23 16 8 C -0.52 -14.96 9.94 -34.44 -0.34 -15.30 16 9 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 12 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 16 S 2.60 49.57 4.59 -107.50 -0.49 49.07 16 17 O -0.93 -21.49 14.64 -57.54 -0.84 -22.33 16 18 O -0.97 -19.46 16.53 -57.54 -0.95 -20.41 16 19 C -0.63 -8.60 5.70 37.16 0.21 -8.38 16 20 C -0.07 -0.92 1.03 -153.70 -0.16 -1.08 16 21 C -0.16 -2.20 8.53 37.16 0.32 -1.88 16 22 C -0.14 -1.60 7.20 -25.92 -0.19 -1.79 16 23 C -0.14 -1.29 7.73 -25.92 -0.20 -1.49 16 24 C -0.12 -1.22 7.23 -25.92 -0.19 -1.40 16 25 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.65 6.96 -51.93 -0.36 0.29 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 35 H 0.08 1.40 5.24 -51.93 -0.27 1.13 16 36 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 37 H 0.03 0.63 7.03 -51.93 -0.37 0.26 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.13 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.13 1.44 6.76 -51.93 -0.35 1.09 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.78 7.34 -51.93 -0.38 0.39 16 43 H 0.07 1.18 5.12 -51.93 -0.27 0.92 16 44 H 0.09 0.94 7.96 -51.92 -0.41 0.53 16 45 H 0.08 0.91 8.10 -51.93 -0.42 0.48 16 46 H 0.08 0.69 7.64 -51.93 -0.40 0.30 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 49 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -33.66 387.02 -10.09 -43.75 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -9.02 Total: 2.38 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -0.41 Total: -27.88 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.46 Total: -46.74 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.79 Total: -42.75 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 49.57 SS G_CDS: -0.49 Total: 49.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.66 -10.09 -43.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603281372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.489 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds