Wall clock time and date at job start Tue Mar 31 2020 11:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 C 1.53008 * 109.46849 * 119.99794 * 2 1 3 5 5 C 1.52995 * 109.47082 * 65.00310 * 4 2 1 6 6 N 1.46504 * 109.46914 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99574 * 274.99597 * 6 5 4 8 8 C 1.50699 * 109.47382 * 274.99862 * 7 6 5 9 9 H 1.08001 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00170 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00082 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99907 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46897 * 90.00402 * 12 10 8 14 14 H 1.48506 * 109.47118 * 210.00102 * 12 10 8 15 15 H 1.48500 * 109.47052 * 330.00291 * 12 10 8 16 16 S 1.65599 * 120.00054 * 94.99871 * 6 5 4 17 17 O 1.42105 * 104.27655 * 153.92607 * 16 6 5 18 18 O 1.42101 * 104.27764 * 26.07044 * 16 6 5 19 19 C 1.81395 * 104.44748 * 269.99913 * 16 6 5 20 20 C 1.52999 * 109.46986 * 180.02562 * 19 16 6 21 21 C 1.53001 * 112.85302 * 48.80114 * 20 19 16 22 22 C 1.53780 * 113.61651 * 277.49533 * 20 19 16 23 23 C 1.53772 * 87.08588 * 220.01937 * 22 20 19 24 24 C 1.53781 * 87.08051 * 25.43133 * 23 22 20 25 25 H 1.08999 * 109.47110 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47238 * 300.00217 * 1 2 3 27 27 H 1.08999 * 109.46745 * 59.99917 * 1 2 3 28 28 H 1.08998 * 109.47238 * 239.99783 * 2 1 3 29 29 H 1.09003 * 109.47328 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46813 * 300.00028 * 3 2 1 31 31 H 1.08998 * 109.47127 * 59.99714 * 3 2 1 32 32 H 1.09000 * 109.46853 * 304.99875 * 4 2 1 33 33 H 1.09000 * 109.47114 * 185.00221 * 4 2 1 34 34 H 1.09000 * 109.47632 * 60.00042 * 5 4 2 35 35 H 1.09000 * 109.47073 * 299.99936 * 5 4 2 36 36 H 1.08995 * 109.47675 * 35.00479 * 7 6 5 37 37 H 1.09001 * 109.46819 * 155.00490 * 7 6 5 38 38 H 0.97001 * 119.99957 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.47393 * 299.99669 * 19 16 6 40 40 H 1.08994 * 109.47678 * 60.00285 * 19 16 6 41 41 H 1.09001 * 109.47311 * 69.66662 * 21 20 19 42 42 H 1.08995 * 109.47567 * 189.66819 * 21 20 19 43 43 H 1.09002 * 109.47157 * 309.66785 * 21 20 19 44 44 H 1.09008 * 113.61346 * 334.56962 * 22 20 19 45 45 H 1.09006 * 113.61552 * 105.46261 * 22 20 19 46 46 H 1.09003 * 113.61639 * 270.88463 * 23 22 20 47 47 H 1.09001 * 113.61787 * 139.97925 * 23 22 20 48 48 H 1.08998 * 113.61492 * 220.02013 * 24 23 22 49 49 H 1.08999 * 113.61379 * 89.11472 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 1.6352 -2.1954 1.1881 6 7 2.1230 -2.8859 2.3846 7 6 3.4912 -3.4083 2.4222 8 6 3.5233 -4.7781 1.7949 9 1 2.6154 -5.2157 1.4067 10 6 4.7116 -5.4728 1.7167 11 7 4.7398 -6.6681 1.1688 12 14 6.2818 -4.7163 2.3889 13 1 6.4419 -5.0945 3.8159 14 1 7.4442 -5.2155 1.6111 15 1 6.2075 -3.2376 2.2739 16 16 1.1278 -3.0758 3.6945 17 8 1.6269 -4.2343 4.3487 18 8 -0.1826 -3.0518 3.1455 19 6 1.4220 -1.5979 4.7044 20 6 0.5497 -1.6564 5.9600 21 6 0.6402 -3.0010 6.6844 22 6 -0.8924 -1.1738 5.7314 23 6 -0.7972 -0.4879 7.1043 24 6 0.7248 -0.4434 6.8888 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6550 0.3004 35 1 0.5489 -2.2724 1.1421 36 1 4.1508 -2.7398 1.8690 37 1 3.8263 -3.4747 3.4573 38 1 5.5759 -7.1567 1.1134 39 1 2.4722 -1.5586 4.9936 40 1 1.1703 -0.7078 4.1279 41 1 1.6268 -3.1048 7.1360 42 1 -0.1219 -3.0469 7.4622 43 1 0.4804 -3.8095 5.9710 44 1 -0.9925 -0.4754 4.9004 45 1 -1.6230 -1.9819 5.6966 46 1 -1.1023 -1.1263 7.9335 47 1 -1.2630 0.4971 7.1337 48 1 1.2998 -0.6619 7.7887 49 1 1.0668 0.4546 6.3744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603281372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:16 Heat of formation + Delta-G solvation = -92.168057 kcal Electronic energy + Delta-G solvation = -26853.124630 eV Core-core repulsion = 23327.652154 eV Total energy + Delta-G solvation = -3525.472476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51551 -38.63254 -38.08931 -36.90785 -36.31493 -34.46159 -32.03772 -30.87808 -28.96607 -28.48026 -27.93123 -26.61046 -24.69913 -23.80475 -23.15315 -20.82361 -19.72195 -19.32043 -19.02037 -18.61738 -17.37342 -17.33310 -16.32473 -16.29777 -16.01898 -15.80617 -15.68094 -14.98819 -14.82681 -14.65835 -14.47546 -14.21077 -13.98130 -13.82988 -13.51770 -13.27633 -13.20007 -13.03944 -12.92387 -12.87821 -12.86621 -12.77742 -12.61335 -12.37944 -12.32257 -12.15711 -11.94340 -11.88119 -11.75212 -11.58067 -11.49991 -11.44868 -11.31628 -11.12518 -10.86556 -10.76663 -9.65978 -8.27893 -6.33093 -0.64908 1.35157 1.40150 1.48241 1.80903 2.35696 2.99002 3.05542 3.18132 3.38922 3.50703 3.64026 3.78541 3.92701 3.93991 4.02153 4.09401 4.15374 4.23155 4.42217 4.51239 4.55789 4.65280 4.68809 4.74116 4.76876 4.83507 4.88107 4.88939 4.92060 4.94380 5.02083 5.05605 5.09979 5.11861 5.16578 5.19068 5.21963 5.34754 5.38209 5.42881 5.50303 5.53574 5.55658 5.58291 5.79889 6.32937 6.69276 7.29063 8.90377 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.006018 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.299820 B = 4651.927580 C = 6450.379178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.130 4.130 5 C 0.112 3.888 6 N -0.992 5.992 7 C 0.234 3.766 8 C -0.537 4.537 9 H 0.020 0.980 10 C 0.004 3.996 11 N -0.952 5.952 12 Si 0.943 3.057 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.224 1.224 16 S 2.586 3.414 17 O -0.990 6.990 18 O -0.993 6.993 19 C -0.590 4.590 20 C -0.090 4.090 21 C -0.171 4.171 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.109 4.109 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.038 0.962 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 22.408 8.531 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.169 4.169 5 C -0.014 4.014 6 N -0.828 5.828 7 C 0.109 3.891 8 C -0.577 4.577 9 H 0.038 0.962 10 C -0.193 4.193 11 N -0.593 5.593 12 Si 0.764 3.236 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.147 1.147 16 S 2.685 3.315 17 O -0.981 6.981 18 O -0.984 6.984 19 C -0.723 4.723 20 C -0.092 4.092 21 C -0.229 4.229 22 C -0.189 4.189 23 C -0.168 4.168 24 C -0.148 4.148 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.178 0.822 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.057 0.943 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.402 21.491 8.572 24.293 hybrid contribution 0.959 -0.682 -0.261 1.205 sum -6.444 20.808 8.311 23.315 Atomic orbital electron populations 1.21944 0.95010 1.01578 1.02547 1.21081 0.96150 0.96998 0.97334 1.21790 1.01012 0.94575 1.02426 1.22146 1.02177 0.93287 0.99339 1.21488 0.99489 0.92650 0.87733 1.57151 1.26038 1.71071 1.28511 1.19197 0.80034 0.92723 0.97099 1.21688 0.94757 1.02292 1.38928 0.96158 1.25981 1.03282 0.95053 0.95014 1.70093 1.28301 1.14257 1.46643 0.85798 0.77636 0.81349 0.78790 1.19294 1.20499 1.14678 1.05487 0.73315 0.78021 0.74648 1.93562 1.80524 1.47599 1.76377 1.93463 1.38943 1.88409 1.77575 1.30531 1.11207 1.20120 1.10448 1.21764 0.96009 0.97844 0.93608 1.22171 1.04680 0.94282 1.01720 1.23323 0.94392 1.01076 1.00138 1.22803 0.96196 1.01748 0.96041 1.22981 0.97325 0.95889 0.98582 0.93739 0.91848 0.91600 0.91607 0.92627 0.91897 0.91884 0.90595 0.90896 0.91742 0.90064 0.92566 0.94550 0.92451 0.83073 0.82210 0.90359 0.88892 0.94302 0.88507 0.91962 0.89376 0.89319 0.90002 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.95 71.98 0.64 -2.44 16 2 C -0.10 -2.01 2.92 -10.79 -0.03 -2.04 16 3 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 4 C -0.13 -3.20 5.01 30.60 0.15 -3.05 16 5 C 0.11 3.87 5.41 86.38 0.47 4.34 16 6 N -0.99 -40.10 2.70 -519.86 -1.40 -41.51 16 7 C 0.23 10.86 4.08 85.63 0.35 11.21 16 8 C -0.54 -32.20 9.94 25.60 0.25 -31.94 16 9 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 10 C 0.00 0.22 5.47 84.65 0.46 0.69 16 11 N -0.95 -61.79 13.96 21.45 0.30 -61.50 16 12 Si 0.94 43.06 27.47 68.60 1.88 44.95 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.22 -8.72 6.54 99.48 0.65 -8.07 16 16 S 2.59 100.10 4.59 -56.49 -0.26 99.84 16 17 O -0.99 -47.92 14.64 -127.65 -1.87 -49.79 16 18 O -0.99 -41.59 16.53 -127.65 -2.11 -43.70 16 19 C -0.59 -14.30 5.70 71.98 0.41 -13.89 16 20 C -0.09 -2.00 1.03 -51.66 -0.05 -2.06 16 21 C -0.17 -4.43 8.53 71.98 0.61 -3.82 16 22 C -0.15 -3.06 7.20 31.12 0.22 -2.83 16 23 C -0.13 -1.85 7.73 31.12 0.24 -1.61 16 24 C -0.11 -1.62 7.23 31.12 0.23 -1.40 16 25 H 0.04 1.05 6.57 -2.39 -0.02 1.03 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.52 6.96 -2.39 -0.02 1.51 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.06 2.47 8.11 -2.39 -0.02 2.45 16 35 H 0.08 2.82 5.24 -2.39 -0.01 2.81 16 36 H 0.06 2.35 7.17 -2.39 -0.02 2.33 16 37 H 0.04 1.63 7.03 -2.39 -0.02 1.61 16 38 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.16 2.85 6.76 -2.39 -0.02 2.83 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.09 1.90 7.34 -2.39 -0.02 1.89 16 43 H 0.04 1.29 5.12 -2.39 -0.01 1.27 16 44 H 0.10 1.75 7.96 -2.38 -0.02 1.73 16 45 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 46 H 0.09 1.15 7.64 -2.39 -0.02 1.13 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 49 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -80.43 387.02 2.00 -78.42 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.84 Total: 23.74 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 4.62 Total: -50.45 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -1.10 Total: -103.00 kcal Atomic # 8 Polarization: -89.52 SS G_CDS: -3.98 Total: -93.50 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 100.10 SS G_CDS: -0.26 Total: 99.84 kcal Total: -80.43 2.00 -78.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603281372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.745 kcal (2) G-P(sol) polarization free energy of solvation -80.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds