Wall clock time and date at job start Tue Mar 31 2020 11:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 55.94118 * 3 2 1 5 5 C 1.53001 * 109.47484 * 315.56636 * 4 3 2 6 6 H 1.09001 * 109.47085 * 55.00327 * 5 4 3 7 7 C 1.52998 * 109.47084 * 174.99985 * 5 4 3 8 8 O 1.42899 * 109.47235 * 55.00196 * 7 5 4 9 9 N 1.46900 * 109.47148 * 295.00137 * 5 4 3 10 10 C 1.46896 * 111.00195 * 154.99709 * 9 5 4 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 5 12 12 C 1.38284 * 119.97210 * 269.97968 * 11 10 9 13 13 C 1.38250 * 120.10839 * 180.02562 * 12 11 10 14 14 C 1.38161 * 120.05581 * 359.68103 * 13 12 11 15 15 C 1.38710 * 119.94432 * 0.61525 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.67631 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.09004 * 109.46922 * 168.48862 * 1 2 3 29 29 H 1.09000 * 109.47554 * 288.49244 * 1 2 3 30 30 H 1.09000 * 109.46969 * 48.49455 * 1 2 3 31 31 H 1.09000 * 109.47064 * 195.56550 * 4 3 2 32 32 H 1.09000 * 109.47001 * 75.56620 * 4 3 2 33 33 H 1.09005 * 109.47166 * 175.00019 * 7 5 4 34 34 H 1.08996 * 109.47140 * 295.00043 * 7 5 4 35 35 H 0.96695 * 114.00450 * 179.97438 * 8 7 5 36 36 H 1.00903 * 110.99490 * 31.04411 * 9 5 4 37 37 H 1.09005 * 109.46944 * 59.99947 * 10 9 5 38 38 H 1.09002 * 109.47398 * 300.00389 * 10 9 5 39 39 H 1.07994 * 119.94418 * 0.02562 * 12 11 10 40 40 H 1.08002 * 119.97138 * 179.97438 * 13 12 11 41 41 H 1.08006 * 120.02996 * 180.29325 * 14 13 12 42 42 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 43 43 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 45 45 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 46 46 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 47 47 H 1.07999 * 120.02419 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0008 -0.0005 5 6 4.6287 -1.0291 1.0091 6 1 4.1942 -2.0035 0.7855 7 6 6.1535 -1.1180 0.9200 8 8 6.7177 0.1827 1.0980 9 7 4.2405 -0.6194 2.3654 10 6 4.1622 -1.7792 3.2635 11 6 3.7630 -1.3207 4.6424 12 6 4.7342 -0.9670 5.5611 13 6 4.3712 -0.5465 6.8270 14 6 3.0362 -0.4724 7.1752 15 6 2.0603 -0.8325 6.2576 16 8 0.7467 -0.7667 6.5999 17 6 0.4427 -0.3235 7.9239 18 6 -1.0742 -0.3143 8.1230 19 6 -1.3949 0.1537 9.5191 20 1 -0.5966 0.4185 10.1966 21 6 -2.7074 0.2448 9.9313 22 7 -3.6796 -0.0773 9.1062 23 14 -3.1049 0.8242 11.6621 24 1 -2.5708 2.1957 11.8598 25 1 -4.5772 0.8344 11.8549 26 1 -2.4825 -0.0961 12.6474 27 6 2.4272 -1.2545 4.9878 28 1 -0.3633 -1.0070 -0.2051 29 1 -0.3634 0.3259 0.9746 30 1 -0.3633 0.6810 -0.7696 31 1 4.4812 0.9909 0.2751 32 1 4.4810 -0.2553 -0.9959 33 1 6.5247 -1.7848 1.6984 34 1 6.4382 -1.5069 -0.0576 35 1 7.6835 0.2019 1.0539 36 1 3.3687 -0.1114 2.3540 37 1 5.1353 -2.2681 3.3112 38 1 3.4204 -2.4825 2.8851 39 1 5.7781 -1.0194 5.2891 40 1 5.1315 -0.2712 7.5429 41 1 2.7529 -0.1393 8.1628 42 1 0.9004 -0.9986 8.6471 43 1 0.8339 0.6835 8.0688 44 1 -1.5315 0.3609 7.3998 45 1 -1.4659 -1.3211 7.9780 46 1 -4.6031 -0.0129 9.3960 47 1 1.6691 -1.5308 4.2699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603431249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:04 Heat of formation + Delta-G solvation = -32.837720 kcal Electronic energy + Delta-G solvation = -25126.421756 eV Core-core repulsion = 21468.078086 eV Total energy + Delta-G solvation = -3658.343670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.82097 -38.58082 -37.24794 -35.80736 -34.32620 -33.37310 -32.35282 -30.83520 -30.05547 -29.10481 -28.43288 -26.06378 -25.38662 -24.62874 -22.26021 -21.65320 -20.91490 -20.13857 -17.95674 -17.62288 -16.81354 -16.29275 -16.12172 -15.59446 -15.53229 -15.33370 -15.22841 -14.62681 -14.50395 -14.27338 -13.95064 -13.84785 -13.75073 -13.30963 -13.21130 -13.01205 -12.72176 -12.50900 -12.41515 -12.28006 -11.88304 -11.53681 -11.33658 -11.27123 -11.19728 -10.84779 -10.72137 -10.43040 -10.30876 -9.89961 -9.83760 -9.81824 -9.65470 -9.31054 -8.79100 -8.51477 -8.44343 -7.80056 -6.10200 -4.14855 1.47072 1.73772 2.50595 2.57251 3.28881 3.33141 3.34983 3.74014 3.87192 4.00644 4.01773 4.21792 4.41263 4.67328 4.77527 4.89017 4.99375 5.07191 5.09936 5.22901 5.26109 5.29832 5.34257 5.36018 5.42453 5.44876 5.51853 5.53598 5.58519 5.69167 5.75101 5.82389 5.85816 6.04767 6.08526 6.21536 6.58046 6.58722 6.72873 6.75343 6.80830 7.02767 7.17721 7.42232 7.50023 7.50981 7.64256 7.81988 8.07911 8.24224 8.90472 9.49357 11.01374 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.002379 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.853552 B =11765.517877 C =13308.978156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.181 4.181 3 C -0.203 4.203 4 C -0.001 4.001 5 C 0.092 3.908 6 H 0.059 0.941 7 C 0.089 3.911 8 O -0.556 6.556 9 N -0.669 5.669 10 C 0.101 3.899 11 C -0.050 4.050 12 C -0.147 4.147 13 C -0.082 4.082 14 C -0.210 4.210 15 C 0.145 3.855 16 O -0.317 6.317 17 C 0.065 3.935 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.156 4.156 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.373 0.627 36 H 0.349 0.651 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.767 -3.264 -18.809 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.181 4.181 3 C -0.203 4.203 4 C -0.038 4.038 5 C -0.018 4.018 6 H 0.077 0.923 7 C 0.010 3.990 8 O -0.360 6.360 9 N -0.302 5.302 10 C -0.027 4.027 11 C -0.051 4.051 12 C -0.166 4.166 13 C -0.100 4.100 14 C -0.229 4.229 15 C 0.098 3.902 16 O -0.230 6.230 17 C -0.009 4.009 18 C -0.011 4.011 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.175 4.175 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.219 0.781 36 H 0.169 0.831 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 19.369 -3.001 -18.696 27.087 hybrid contribution -0.480 -0.225 0.856 1.007 sum 18.889 -3.226 -17.840 26.182 Atomic orbital electron populations 1.18915 0.84582 1.03023 1.03551 1.22510 0.93980 1.01047 1.00563 1.22346 0.93673 1.01995 1.02316 1.18737 0.83984 1.01781 0.99316 1.21591 0.94028 0.97200 0.88987 0.92301 1.22162 0.92897 0.85201 0.98711 1.86585 1.24605 1.28816 1.95996 1.60534 1.39107 1.23482 1.07032 1.20908 1.00608 0.91699 0.89520 1.19354 0.92240 0.98669 0.94792 1.20739 0.98773 1.03488 0.93564 1.20893 0.95261 0.97630 0.96209 1.21387 0.93425 1.07385 1.00721 1.19128 0.84216 0.93554 0.93328 1.86163 1.20265 1.81181 1.35392 1.23320 1.01474 0.97357 0.78708 1.19113 0.85969 0.98699 0.97342 1.20935 0.92299 1.45775 0.97491 0.92421 1.24990 0.96230 0.95188 0.97774 1.69970 0.99619 1.47685 1.35530 0.86541 0.77270 0.79350 0.84185 1.20077 1.21110 1.20086 1.20259 0.95659 1.06462 0.95132 0.90205 0.89644 0.90173 0.87872 0.89340 0.93451 0.93660 0.78111 0.83111 0.90290 0.94408 0.86410 0.86188 0.85296 0.93167 0.93148 0.95428 0.95445 0.92654 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.39 10.32 34.37 0.35 -0.03 16 2 C -0.18 -2.05 14.13 -37.12 -0.52 -2.57 16 3 C -0.20 -2.27 12.20 -37.12 -0.45 -2.72 16 4 C 0.00 -0.01 5.03 -29.52 -0.15 -0.16 16 5 C 0.09 0.80 2.41 -67.71 -0.16 0.64 16 6 H 0.06 0.49 7.80 -51.93 -0.40 0.09 16 7 C 0.09 0.62 6.80 37.16 0.25 0.87 16 8 O -0.56 -4.44 12.83 -35.23 -0.45 -4.89 16 9 N -0.67 -7.32 6.25 -107.99 -0.67 -7.99 16 10 C 0.10 1.09 5.61 -4.98 -0.03 1.06 16 11 C -0.05 -0.67 5.39 -104.65 -0.56 -1.24 16 12 C -0.15 -1.92 9.70 -39.56 -0.38 -2.30 16 13 C -0.08 -1.13 10.04 -39.61 -0.40 -1.52 16 14 C -0.21 -3.42 9.04 -39.44 -0.36 -3.78 16 15 C 0.14 2.61 6.69 -39.22 -0.26 2.35 16 16 O -0.32 -6.69 10.14 -19.43 -0.20 -6.89 16 17 C 0.07 1.43 4.68 37.16 0.17 1.61 16 18 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 19 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 23 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.16 -2.46 9.64 -39.43 -0.38 -2.84 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.03 7.73 -51.93 -0.40 0.63 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.32 7.35 -51.93 -0.38 -0.07 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.37 1.38 9.12 45.56 0.42 1.79 16 36 H 0.35 4.34 7.36 -39.29 -0.29 4.05 16 37 H 0.08 0.74 7.30 -51.93 -0.38 0.36 16 38 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 2.06 6.30 -52.48 -0.33 1.73 16 42 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 43 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.75 398.45 -9.80 -42.54 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.75 Total: 4.32 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.44 Total: -23.59 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.06 Total: -33.86 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.65 Total: -11.78 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.75 -9.80 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603431249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.706 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds