Wall clock time and date at job start Tue Mar 31 2020 11:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.52996 * 109.47220 * 239.99179 * 2 1 3 5 5 C 1.53005 * 109.46719 * 119.99550 * 2 1 3 6 6 N 1.46503 * 109.46963 * 64.47015 * 5 2 1 7 7 C 1.46501 * 119.99878 * 269.10625 * 6 5 2 8 8 C 1.50706 * 109.47044 * 278.84173 * 7 6 5 9 9 H 1.08000 * 119.99898 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99710 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99670 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00279 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47140 * 89.99927 * 12 10 8 14 14 H 1.48500 * 109.47477 * 210.00043 * 12 10 8 15 15 H 1.48504 * 109.47243 * 330.00150 * 12 10 8 16 16 C 1.34772 * 120.00130 * 89.10794 * 6 5 2 17 17 O 1.21585 * 119.99981 * 6.16372 * 16 6 5 18 18 C 1.47595 * 120.00332 * 186.16709 * 16 6 5 19 19 C 1.39756 * 120.26821 * 330.58131 * 18 16 6 20 20 C 1.37461 * 120.20729 * 180.15709 * 19 18 16 21 21 C 1.39590 * 120.43215 * 0.02562 * 20 19 18 22 22 C 1.39278 * 119.08669 * 359.60187 * 21 20 19 23 23 C 1.37232 * 120.92531 * 0.58828 * 22 21 20 24 24 C 1.51678 * 106.94543 * 180.57376 * 22 21 20 25 25 C 1.54706 * 101.91056 * 15.73550 * 24 22 21 26 26 O 1.35997 * 129.71197 * 179.56236 * 21 20 19 27 27 H 1.09001 * 109.47501 * 300.00981 * 1 2 3 28 28 H 1.09008 * 109.46286 * 60.00463 * 1 2 3 29 29 H 1.08994 * 109.47438 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47004 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46837 * 299.99678 * 3 2 1 32 32 H 1.09000 * 109.47218 * 59.99414 * 3 2 1 33 33 H 1.08992 * 109.47773 * 305.19045 * 4 2 1 34 34 H 1.09005 * 109.46957 * 65.19525 * 4 2 1 35 35 H 1.09008 * 109.46883 * 185.18930 * 4 2 1 36 36 H 1.09005 * 109.47072 * 304.47084 * 5 2 1 37 37 H 1.09000 * 109.47580 * 184.47064 * 5 2 1 38 38 H 1.08991 * 109.47414 * 38.84235 * 7 6 5 39 39 H 1.09000 * 109.47052 * 158.84674 * 7 6 5 40 40 H 0.97003 * 119.99704 * 179.97438 * 11 10 8 41 41 H 1.08004 * 119.89349 * 0.13349 * 19 18 16 42 42 H 1.08000 * 119.78694 * 180.02562 * 20 19 18 43 43 H 1.07997 * 120.04792 * 179.61457 * 23 22 21 44 44 H 1.09001 * 110.94877 * 257.57822 * 24 22 21 45 45 H 1.08993 * 110.94789 * 133.90024 * 24 22 21 46 46 H 1.08994 * 110.74172 * 92.89304 * 25 24 22 47 47 H 1.09002 * 110.74348 * 216.04416 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 7 1.6414 -2.1300 1.1968 7 6 0.3718 -2.5547 1.7917 8 6 0.5456 -2.7239 3.2791 9 1 1.5057 -2.5336 3.7356 10 6 -0.5211 -3.1216 4.0569 11 7 -0.3695 -3.2687 5.3550 12 14 -2.1814 -3.4514 3.2672 13 1 -2.2632 -4.8783 2.8642 14 1 -3.2614 -3.1493 4.2406 15 1 -2.3396 -2.5888 2.0687 16 6 2.4428 -3.0353 0.6013 17 8 3.5448 -2.7056 0.2074 18 6 1.9826 -4.4268 0.4271 19 6 1.0828 -4.9902 1.3359 20 6 0.6575 -6.2873 1.1743 21 6 1.1192 -7.0545 0.1034 22 6 2.0098 -6.4848 -0.8033 23 6 2.4433 -5.1920 -0.6486 24 6 2.3143 -7.5420 -1.8475 25 6 1.1780 -8.5641 -1.6078 26 8 0.8341 -8.3418 -0.2299 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6029 -1.7187 -1.2968 34 1 1.7546 -0.1567 -2.1368 35 1 3.1261 -0.8026 -1.2038 36 1 1.6126 -0.2556 2.1375 37 1 3.1270 -0.6524 1.2905 38 1 -0.3905 -1.8000 1.5985 39 1 0.0637 -3.5032 1.3517 40 1 -1.1200 -3.5482 5.9023 41 1 0.7207 -4.4046 2.1681 42 1 -0.0383 -6.7158 1.8805 43 1 3.1388 -4.7665 -1.3568 44 1 3.2897 -7.9951 -1.6704 45 1 2.2573 -7.1246 -2.8527 46 1 0.3274 -8.3550 -2.2565 47 1 1.5362 -9.5823 -1.7597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609191492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:11 Heat of formation + Delta-G solvation = -22.181586 kcal Electronic energy + Delta-G solvation = -28043.000970 eV Core-core repulsion = 24385.119384 eV Total energy + Delta-G solvation = -3657.881586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99434 -39.76759 -37.27632 -36.30350 -34.69409 -32.52968 -32.48174 -30.04874 -29.34548 -28.23025 -27.00675 -26.86115 -25.96666 -23.45387 -22.93832 -21.99865 -21.50244 -19.34151 -18.18373 -17.44624 -17.18480 -16.72608 -16.25368 -15.83538 -15.40879 -15.04417 -14.35871 -14.20610 -14.04055 -13.69834 -13.61952 -13.22053 -13.15018 -12.96884 -12.92182 -12.56969 -12.39855 -12.24282 -12.01852 -11.89843 -11.79482 -11.34569 -11.30290 -11.15708 -11.00495 -10.88028 -10.71492 -10.67053 -10.45086 -10.26723 -10.21665 -9.90211 -9.67422 -9.11300 -8.87617 -8.50915 -7.89219 -7.67156 -6.34946 -4.37721 1.31382 1.65531 3.10403 3.19150 3.21521 3.27907 3.42290 3.79635 4.15150 4.17784 4.47457 4.64561 4.91032 4.94289 5.06140 5.12449 5.14335 5.24679 5.31719 5.35865 5.46307 5.66232 5.76424 5.81370 5.82985 5.85076 5.88292 5.99102 6.05577 6.11797 6.15710 6.25784 6.29515 6.35182 6.35906 6.42696 6.51030 6.53525 6.58283 6.62752 6.73443 6.78785 6.84974 7.00757 7.25353 7.35846 7.42573 8.05527 8.35259 8.74002 8.90828 9.22515 10.76380 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.006089 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.941282 B = 4597.142020 C = 6573.159246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.133 4.133 5 C 0.131 3.869 6 N -0.578 5.578 7 C 0.173 3.827 8 C -0.546 4.546 9 H 0.083 0.917 10 C 0.082 3.918 11 N -0.878 5.878 12 Si 0.857 3.143 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.260 1.260 16 C 0.566 3.434 17 O -0.564 6.564 18 C -0.160 4.160 19 C -0.067 4.067 20 C -0.153 4.153 21 C 0.120 3.880 22 C -0.202 4.202 23 C -0.018 4.018 24 C -0.104 4.104 25 C 0.051 3.949 26 O -0.306 6.306 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.270 0.730 41 H 0.204 0.796 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -2.363 -13.737 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.190 4.190 5 C 0.007 3.993 6 N -0.306 5.306 7 C 0.052 3.948 8 C -0.583 4.583 9 H 0.101 0.899 10 C -0.124 4.124 11 N -0.514 5.514 12 Si 0.682 3.318 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.184 1.184 16 C 0.356 3.644 17 O -0.445 6.445 18 C -0.163 4.163 19 C -0.084 4.084 20 C -0.172 4.172 21 C 0.074 3.926 22 C -0.203 4.203 23 C -0.037 4.037 24 C -0.141 4.141 25 C -0.024 4.024 26 O -0.220 6.220 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.220 0.780 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.036 -2.407 -13.609 13.859 hybrid contribution -0.977 -0.298 -0.296 1.063 sum 0.059 -2.705 -13.905 14.165 Atomic orbital electron populations 1.21998 0.94719 1.02362 1.00985 1.20963 0.95935 0.95277 0.96426 1.21779 1.00914 0.95220 1.01435 1.21846 1.01773 0.99621 0.95809 1.21405 1.00337 0.80718 0.96798 1.47634 1.21587 1.06932 1.54487 1.20832 0.82175 0.97354 0.94438 1.21363 0.99480 1.47641 0.89845 0.89857 1.24909 0.98426 0.94363 0.94690 1.69882 1.32123 1.44791 1.04579 0.87124 0.84403 0.80048 0.80206 1.19096 1.20493 1.18378 1.17964 0.84251 0.84653 0.77550 1.90671 1.20520 1.80703 1.52632 1.19817 1.02736 0.95325 0.98433 1.23222 0.91454 0.93893 0.99816 1.20390 1.04533 0.93531 0.98739 1.19954 0.93516 0.83524 0.95557 1.20504 1.03165 0.96093 1.00554 1.20179 0.96222 0.91059 0.96193 1.21709 0.99590 0.94058 0.98754 1.23797 0.97104 1.00400 0.81106 1.86772 1.82052 1.25097 1.28049 0.92518 0.93535 0.91889 0.92682 0.92930 0.92594 0.93153 0.93901 0.91802 0.89935 0.90622 0.94286 0.92759 0.92018 0.78027 0.85226 0.85418 0.89448 0.89356 0.90729 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.51 37.16 0.28 -1.87 16 2 C -0.08 -1.29 0.85 -154.51 -0.13 -1.42 16 3 C -0.14 -1.72 8.47 37.16 0.31 -1.41 16 4 C -0.13 -2.07 7.12 37.16 0.26 -1.80 16 5 C 0.13 2.36 4.59 -4.04 -0.02 2.34 16 6 N -0.58 -11.66 2.01 -176.26 -0.35 -12.01 16 7 C 0.17 3.69 3.02 -5.19 -0.02 3.67 16 8 C -0.55 -13.66 8.10 -34.44 -0.28 -13.93 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 10 C 0.08 2.10 5.35 -17.82 -0.10 2.00 16 11 N -0.88 -24.36 13.96 55.43 0.77 -23.59 16 12 Si 0.86 18.82 27.33 -169.99 -4.65 14.18 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 16 C 0.57 11.77 5.67 -12.44 -0.07 11.70 16 17 O -0.56 -12.42 14.65 5.29 0.08 -12.35 16 18 C -0.16 -3.14 5.60 -104.92 -0.59 -3.73 16 19 C -0.07 -1.34 7.48 -39.30 -0.29 -1.64 16 20 C -0.15 -2.83 10.05 -39.36 -0.40 -3.23 16 21 C 0.12 2.03 7.05 -38.69 -0.27 1.76 16 22 C -0.20 -3.15 6.26 -104.12 -0.65 -3.80 16 23 C -0.02 -0.30 9.58 -39.36 -0.38 -0.68 16 24 C -0.10 -1.15 7.12 -26.50 -0.19 -1.34 16 25 C 0.05 0.54 8.00 38.06 0.30 0.84 16 26 O -0.31 -4.65 11.09 -19.73 -0.22 -4.87 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 1.04 5.80 -51.93 -0.30 0.74 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.86 6.63 -51.93 -0.34 0.51 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 1.06 7.24 -51.92 -0.38 0.69 16 36 H 0.08 1.51 8.07 -51.93 -0.42 1.10 16 37 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 38 H 0.04 0.82 4.80 -51.93 -0.25 0.57 16 39 H 0.06 1.16 3.41 -52.21 -0.18 0.98 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.20 4.49 2.90 -52.48 -0.15 4.33 16 42 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.13 2.04 7.92 -52.49 -0.42 1.63 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -28.70 361.60 -8.19 -36.89 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.06 Total: 8.84 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.21 Total: -12.54 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.42 Total: -35.60 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.14 Total: -17.21 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.65 Total: 14.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.70 -8.19 -36.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.706 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds