Wall clock time and date at job start Tue Mar 31 2020 11:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.52996 * 109.47220 * 239.99179 * 2 1 3 5 5 C 1.53005 * 109.46719 * 119.99550 * 2 1 3 6 6 N 1.46503 * 109.46963 * 64.47015 * 5 2 1 7 7 C 1.46501 * 119.99878 * 269.10625 * 6 5 2 8 8 C 1.50706 * 109.47044 * 278.84173 * 7 6 5 9 9 H 1.08000 * 119.99898 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99710 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99670 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00279 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47140 * 89.99927 * 12 10 8 14 14 H 1.48500 * 109.47477 * 210.00043 * 12 10 8 15 15 H 1.48504 * 109.47243 * 330.00150 * 12 10 8 16 16 C 1.34772 * 120.00130 * 89.10794 * 6 5 2 17 17 O 1.21585 * 119.99981 * 6.16372 * 16 6 5 18 18 C 1.47595 * 120.00332 * 186.16709 * 16 6 5 19 19 C 1.39756 * 120.26821 * 330.58131 * 18 16 6 20 20 C 1.37461 * 120.20729 * 180.15709 * 19 18 16 21 21 C 1.39590 * 120.43215 * 0.02562 * 20 19 18 22 22 C 1.39278 * 119.08669 * 359.60187 * 21 20 19 23 23 C 1.37232 * 120.92531 * 0.58828 * 22 21 20 24 24 C 1.51678 * 106.94543 * 180.57376 * 22 21 20 25 25 C 1.54706 * 101.91056 * 15.73550 * 24 22 21 26 26 O 1.35997 * 129.71197 * 179.56236 * 21 20 19 27 27 H 1.09001 * 109.47501 * 300.00981 * 1 2 3 28 28 H 1.09008 * 109.46286 * 60.00463 * 1 2 3 29 29 H 1.08994 * 109.47438 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47004 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46837 * 299.99678 * 3 2 1 32 32 H 1.09000 * 109.47218 * 59.99414 * 3 2 1 33 33 H 1.08992 * 109.47773 * 305.19045 * 4 2 1 34 34 H 1.09005 * 109.46957 * 65.19525 * 4 2 1 35 35 H 1.09008 * 109.46883 * 185.18930 * 4 2 1 36 36 H 1.09005 * 109.47072 * 304.47084 * 5 2 1 37 37 H 1.09000 * 109.47580 * 184.47064 * 5 2 1 38 38 H 1.08991 * 109.47414 * 38.84235 * 7 6 5 39 39 H 1.09000 * 109.47052 * 158.84674 * 7 6 5 40 40 H 0.97003 * 119.99704 * 179.97438 * 11 10 8 41 41 H 1.08004 * 119.89349 * 0.13349 * 19 18 16 42 42 H 1.08000 * 119.78694 * 180.02562 * 20 19 18 43 43 H 1.07997 * 120.04792 * 179.61457 * 23 22 21 44 44 H 1.09001 * 110.94877 * 257.57822 * 24 22 21 45 45 H 1.08993 * 110.94789 * 133.90024 * 24 22 21 46 46 H 1.08994 * 110.74172 * 92.89304 * 25 24 22 47 47 H 1.09002 * 110.74348 * 216.04416 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 7 1.6414 -2.1300 1.1968 7 6 0.3718 -2.5547 1.7917 8 6 0.5456 -2.7239 3.2791 9 1 1.5057 -2.5336 3.7356 10 6 -0.5211 -3.1216 4.0569 11 7 -0.3695 -3.2687 5.3550 12 14 -2.1814 -3.4514 3.2672 13 1 -2.2632 -4.8783 2.8642 14 1 -3.2614 -3.1493 4.2406 15 1 -2.3396 -2.5888 2.0687 16 6 2.4428 -3.0353 0.6013 17 8 3.5448 -2.7056 0.2074 18 6 1.9826 -4.4268 0.4271 19 6 1.0828 -4.9902 1.3359 20 6 0.6575 -6.2873 1.1743 21 6 1.1192 -7.0545 0.1034 22 6 2.0098 -6.4848 -0.8033 23 6 2.4433 -5.1920 -0.6486 24 6 2.3143 -7.5420 -1.8475 25 6 1.1780 -8.5641 -1.6078 26 8 0.8341 -8.3418 -0.2299 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6029 -1.7187 -1.2968 34 1 1.7546 -0.1567 -2.1368 35 1 3.1261 -0.8026 -1.2038 36 1 1.6126 -0.2556 2.1375 37 1 3.1270 -0.6524 1.2905 38 1 -0.3905 -1.8000 1.5985 39 1 0.0637 -3.5032 1.3517 40 1 -1.1200 -3.5482 5.9023 41 1 0.7207 -4.4046 2.1681 42 1 -0.0383 -6.7158 1.8805 43 1 3.1388 -4.7665 -1.3568 44 1 3.2897 -7.9951 -1.6704 45 1 2.2573 -7.1246 -2.8527 46 1 0.3274 -8.3550 -2.2565 47 1 1.5362 -9.5823 -1.7597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609191492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:11 Heat of formation + Delta-G solvation = -37.546775 kcal Electronic energy + Delta-G solvation = -28043.667254 eV Core-core repulsion = 24385.119384 eV Total energy + Delta-G solvation = -3658.547870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24910 -41.23852 -38.57935 -37.81925 -36.26712 -34.40202 -33.66285 -31.42769 -30.73945 -29.78486 -28.15911 -28.11698 -27.38246 -24.84032 -24.41991 -23.42554 -22.76630 -20.77414 -19.58202 -19.13646 -18.70475 -18.07663 -17.54900 -17.12184 -16.83163 -16.58881 -16.01019 -15.62905 -15.37457 -15.06073 -14.95589 -14.72499 -14.53956 -14.43615 -14.06896 -13.99106 -13.75641 -13.42531 -13.32271 -13.14807 -12.91358 -12.73169 -12.65869 -12.53753 -12.50909 -12.30693 -12.14463 -11.85210 -11.82658 -11.76256 -11.57745 -11.53312 -11.35480 -10.88432 -10.65533 -9.92870 -9.39922 -9.13096 -8.35987 -6.43265 -0.10867 0.28122 1.36012 1.38353 1.46565 1.81568 2.17495 2.28517 2.33687 2.71388 2.97418 3.43657 3.59088 3.71910 3.88348 3.89358 3.96624 4.06656 4.18412 4.21972 4.42797 4.49681 4.55967 4.58379 4.64067 4.66296 4.75164 4.83291 4.83374 4.86957 4.91367 4.92672 4.95597 5.02420 5.06110 5.07869 5.18818 5.21776 5.24302 5.31128 5.35757 5.40925 5.49168 5.53568 5.56851 5.75387 6.11675 6.13418 6.59099 6.66943 7.16979 7.31250 8.79420 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.006089 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.941282 B = 4597.142020 C = 6573.159246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.125 4.125 5 C 0.126 3.874 6 N -0.580 5.580 7 C 0.185 3.815 8 C -0.540 4.540 9 H 0.034 0.966 10 C 0.034 3.966 11 N -0.929 5.929 12 Si 0.916 3.084 13 H -0.255 1.255 14 H -0.280 1.280 15 H -0.237 1.237 16 C 0.562 3.438 17 O -0.583 6.583 18 C -0.181 4.181 19 C -0.085 4.085 20 C -0.167 4.167 21 C 0.122 3.878 22 C -0.194 4.194 23 C -0.018 4.018 24 C -0.100 4.100 25 C 0.045 3.955 26 O -0.319 6.319 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.271 0.729 41 H 0.178 0.822 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -3.322 -17.344 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.182 4.182 5 C 0.004 3.996 6 N -0.308 5.308 7 C 0.064 3.936 8 C -0.578 4.578 9 H 0.052 0.948 10 C -0.168 4.168 11 N -0.567 5.567 12 Si 0.737 3.263 13 H -0.179 1.179 14 H -0.205 1.205 15 H -0.160 1.160 16 C 0.352 3.648 17 O -0.466 6.466 18 C -0.184 4.184 19 C -0.102 4.102 20 C -0.185 4.185 21 C 0.076 3.924 22 C -0.195 4.195 23 C -0.037 4.037 24 C -0.136 4.136 25 C -0.029 4.029 26 O -0.233 6.233 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.195 0.805 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.122 0.878 45 H 0.134 0.866 46 H 0.111 0.889 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.056 -3.360 -17.242 17.566 hybrid contribution -0.540 -0.113 0.804 0.975 sum -0.485 -3.473 -16.437 16.807 Atomic orbital electron populations 1.21963 0.94139 1.01516 1.02197 1.20934 0.96339 0.96401 0.94467 1.21744 1.00939 0.93379 1.02763 1.21753 1.00503 0.99038 0.96925 1.21542 0.99635 0.80122 0.98329 1.47676 1.21192 1.07798 1.54153 1.20639 0.82972 0.98117 0.91920 1.21378 0.97437 1.47094 0.91896 0.94788 1.25665 1.02293 0.93923 0.94874 1.70026 1.33473 1.46836 1.06393 0.86178 0.79259 0.80877 0.79953 1.17880 1.20519 1.16035 1.18244 0.83995 0.85299 0.77220 1.90641 1.21120 1.81194 1.53687 1.19830 1.03763 0.95003 0.99828 1.22839 0.92887 0.94766 0.99714 1.20375 1.05029 0.93325 0.99797 1.19992 0.93168 0.84300 0.94932 1.20984 1.01412 0.95936 1.01146 1.20298 0.96177 0.91656 0.95521 1.21891 1.00596 0.92519 0.98623 1.24243 0.97723 1.02183 0.78756 1.86769 1.81949 1.23658 1.30904 0.92621 0.90990 0.93696 0.92706 0.90738 0.92109 0.94998 0.91326 0.93410 0.91005 0.91870 0.93332 0.91723 0.91934 0.80543 0.85167 0.84283 0.87838 0.86567 0.88933 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 7.51 71.98 0.54 -3.45 16 2 C -0.08 -2.38 0.85 -52.18 -0.04 -2.42 16 3 C -0.13 -3.08 8.47 71.98 0.61 -2.47 16 4 C -0.12 -3.75 7.12 71.98 0.51 -3.24 16 5 C 0.13 4.73 4.59 86.38 0.40 5.12 16 6 N -0.58 -24.31 2.01 -829.83 -1.66 -25.98 16 7 C 0.18 8.12 3.02 85.63 0.26 8.38 16 8 C -0.54 -28.54 8.10 25.60 0.21 -28.33 16 9 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 10 C 0.03 1.78 5.35 84.65 0.45 2.24 16 11 N -0.93 -54.04 13.96 21.45 0.30 -53.74 16 12 Si 0.92 39.07 27.33 68.60 1.87 40.94 16 13 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 16 C 0.56 24.13 5.67 86.71 0.49 24.63 16 17 O -0.58 -26.46 14.65 -3.98 -0.06 -26.52 16 18 C -0.18 -7.23 5.60 -20.06 -0.11 -7.34 16 19 C -0.08 -3.49 7.48 22.45 0.17 -3.32 16 20 C -0.17 -6.17 10.05 22.41 0.23 -5.94 16 21 C 0.12 3.93 7.05 22.85 0.16 4.09 16 22 C -0.19 -5.57 6.26 -19.54 -0.12 -5.70 16 23 C -0.02 -0.59 9.58 22.41 0.21 -0.37 16 24 C -0.10 -1.76 7.12 30.74 0.22 -1.55 16 25 C 0.04 0.73 8.00 72.56 0.58 1.31 16 26 O -0.32 -8.76 11.09 -93.52 -1.04 -9.80 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.04 1.43 5.80 -2.39 -0.01 1.41 16 30 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.03 1.06 6.63 -2.39 -0.02 1.04 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.05 1.58 7.24 -2.38 -0.02 1.56 16 36 H 0.07 2.78 8.07 -2.38 -0.02 2.76 16 37 H 0.06 2.48 7.37 -2.39 -0.02 2.46 16 38 H 0.05 2.05 4.80 -2.39 -0.01 2.04 16 39 H 0.07 2.81 3.41 -2.65 -0.01 2.80 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.18 8.22 2.90 -2.91 -0.01 8.21 16 42 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 43 H 0.14 4.26 7.92 -2.91 -0.02 4.23 16 44 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.14 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.29 361.60 5.09 -61.20 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.92 Total: 32.27 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.76 Total: -18.37 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -1.36 Total: -79.72 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.10 Total: -36.32 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.87 Total: 40.94 kcal Total: -66.29 5.09 -61.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.651 kcal (2) G-P(sol) polarization free energy of solvation -66.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds