Wall clock time and date at job start Tue Mar 31 2020 11:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.52999 * 109.47110 * 239.99982 * 2 1 3 5 5 C 1.52999 * 109.47542 * 119.99749 * 2 1 3 6 6 N 1.46902 * 109.46986 * 83.41540 * 5 2 1 7 7 C 1.46897 * 111.00010 * 314.96915 * 6 5 2 8 8 C 1.50703 * 109.46964 * 285.98802 * 7 6 5 9 9 H 1.08002 * 119.99887 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00244 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99884 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99583 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47301 * 90.00826 * 12 10 8 14 14 H 1.48504 * 109.47316 * 210.00394 * 12 10 8 15 15 H 1.48494 * 109.47573 * 330.00434 * 12 10 8 16 16 C 1.46900 * 110.99836 * 78.92111 * 6 5 2 17 17 C 1.52991 * 109.47367 * 75.61604 * 16 6 5 18 18 C 1.53001 * 109.47273 * 174.56311 * 17 16 6 19 19 H 1.08997 * 109.64155 * 305.42752 * 18 17 16 20 20 C 1.53873 * 109.64616 * 65.72659 * 18 17 16 21 21 C 1.55054 * 106.62309 * 167.03414 * 20 18 17 22 22 S 1.83289 * 102.56582 * 317.56736 * 21 20 18 23 23 O 1.42102 * 109.34911 * 269.81273 * 22 21 20 24 24 O 1.42097 * 109.35492 * 136.61214 * 22 21 20 25 25 C 1.54169 * 109.64751 * 185.00197 * 18 17 16 26 26 H 1.09003 * 109.47139 * 302.49929 * 1 2 3 27 27 H 1.08992 * 109.47029 * 62.49781 * 1 2 3 28 28 H 1.08998 * 109.46733 * 182.50303 * 1 2 3 29 29 H 1.08996 * 109.47289 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47389 * 299.99920 * 3 2 1 31 31 H 1.08996 * 109.47310 * 60.00202 * 3 2 1 32 32 H 1.09000 * 109.47139 * 291.04294 * 4 2 1 33 33 H 1.09000 * 109.47155 * 51.04022 * 4 2 1 34 34 H 1.09006 * 109.47105 * 171.04117 * 4 2 1 35 35 H 1.08999 * 109.47141 * 323.41845 * 5 2 1 36 36 H 1.08997 * 109.47411 * 203.41433 * 5 2 1 37 37 H 1.08992 * 109.47780 * 45.98699 * 7 6 5 38 38 H 1.09005 * 109.47444 * 165.99249 * 7 6 5 39 39 H 0.97010 * 119.99671 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.47322 * 195.62201 * 16 6 5 41 41 H 1.09001 * 109.46937 * 315.61521 * 16 6 5 42 42 H 1.09002 * 109.47395 * 294.56248 * 17 16 6 43 43 H 1.09006 * 109.47144 * 54.56312 * 17 16 6 44 44 H 1.08997 * 110.02500 * 286.32106 * 20 18 17 45 45 H 1.08994 * 110.03013 * 47.74708 * 20 18 17 46 46 H 1.08991 * 110.78890 * 199.29543 * 21 20 18 47 47 H 1.09007 * 110.78625 * 75.83227 * 21 20 18 48 48 H 1.09004 * 110.31482 * 331.14112 * 25 18 17 49 49 H 1.09000 * 110.32206 * 93.33303 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 7 2.0536 -2.1700 1.0070 7 6 0.8102 -2.6069 0.3583 8 6 -0.3115 -2.5977 1.3647 9 1 -0.1197 -2.2977 2.3843 10 6 -1.5824 -2.9732 0.9840 11 7 -2.5613 -2.9647 1.8622 12 14 -1.9139 -3.4928 -0.7794 13 1 -1.7104 -4.9579 -0.9104 14 1 -3.3138 -3.1533 -1.1407 15 1 -0.9813 -2.7802 -1.6891 16 6 3.2266 -2.5601 0.2134 17 6 4.4720 -2.5432 1.1018 18 6 5.6687 -3.0786 0.3129 19 1 5.4307 -4.0628 -0.0906 20 6 6.0004 -2.1159 -0.8407 21 6 7.3940 -2.5315 -1.3786 22 16 8.3362 -2.8516 0.1607 23 8 8.9742 -1.6531 0.5800 24 8 9.0942 -4.0440 0.0094 25 6 6.8964 -3.1814 1.2396 26 1 -0.3633 0.5522 0.8667 27 1 -0.3633 0.4745 -0.9115 28 1 -0.3633 -1.0267 0.0449 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8132 -1.7847 -1.1728 33 1 1.5519 -0.3082 -2.1320 34 1 3.1182 -0.5847 -1.3329 35 1 1.3832 -0.4996 2.0904 36 1 3.0503 -0.3816 1.4778 37 1 0.5695 -1.9286 -0.4602 38 1 0.9394 -3.6163 -0.0325 39 1 -3.4556 -3.2286 1.5942 40 1 3.0782 -3.5638 -0.1853 41 1 3.3581 -1.8580 -0.6100 42 1 4.6760 -1.5215 1.4222 43 1 4.3030 -3.1714 1.9764 44 1 5.2535 -2.2070 -1.6294 45 1 6.0328 -1.0902 -0.4734 46 1 7.8468 -1.7198 -1.9477 47 1 7.3214 -3.4358 -1.9829 48 1 6.8371 -2.4338 2.0307 49 1 6.9652 -4.1816 1.6673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611171094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:51 Heat of formation + Delta-G solvation = -26.187242 kcal Electronic energy + Delta-G solvation = -26624.588931 eV Core-core repulsion = 23101.977598 eV Total energy + Delta-G solvation = -3522.611333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.85592 -37.57272 -37.22990 -36.21656 -33.88397 -32.81836 -31.16904 -29.61387 -28.22228 -27.35887 -26.29700 -25.16461 -24.17323 -22.37728 -20.47461 -20.18937 -19.06550 -18.38908 -17.15794 -16.87648 -16.63765 -15.89922 -15.44937 -15.04423 -14.91234 -14.56143 -14.36358 -14.15360 -13.90508 -13.52648 -13.32932 -12.82753 -12.77088 -12.50336 -12.38294 -12.26252 -12.18262 -11.98312 -11.83523 -11.70915 -11.51118 -11.24862 -11.14558 -11.06853 -10.89168 -10.82013 -10.72757 -10.66605 -10.55494 -10.32239 -10.03226 -9.88126 -9.76268 -9.40152 -9.25798 -8.59943 -7.11177 -6.09897 -4.03931 -0.18911 2.27907 3.21293 3.28165 3.30778 3.33978 3.73205 4.10610 4.28176 4.34565 4.34991 4.54246 4.65153 4.81161 5.12475 5.14984 5.20400 5.24612 5.26616 5.35202 5.38954 5.41564 5.55260 5.60869 5.69729 5.78136 5.83095 5.88986 5.97990 5.99816 6.08800 6.17115 6.28592 6.33937 6.42353 6.44391 6.53985 6.61900 6.74857 6.85633 6.88830 6.94739 7.46194 7.64192 7.89912 8.04562 8.64324 9.02356 9.50745 11.03337 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.003394 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.797171 B = 8247.873234 C = 8792.208932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.169 4.169 5 C 0.076 3.924 6 N -0.521 5.521 7 C 0.123 3.877 8 C -0.495 4.495 9 H 0.080 0.920 10 C 0.069 3.931 11 N -0.897 5.897 12 Si 0.862 3.138 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.011 3.989 17 C -0.104 4.104 18 C -0.081 4.081 19 H 0.093 0.907 20 C -0.120 4.120 21 C -0.587 4.587 22 S 2.382 3.618 23 O -0.941 6.941 24 O -0.945 6.945 25 C -0.584 4.584 26 H 0.048 0.952 27 H 0.027 0.973 28 H 0.128 0.872 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.892 3.146 -6.906 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.097 4.097 3 C -0.193 4.193 4 C -0.225 4.225 5 C -0.052 4.052 6 N -0.243 5.243 7 C -0.002 4.002 8 C -0.534 4.534 9 H 0.098 0.902 10 C -0.133 4.133 11 N -0.537 5.537 12 Si 0.689 3.311 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.190 1.190 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.102 4.102 19 H 0.112 0.888 20 C -0.158 4.158 21 C -0.717 4.717 22 S 2.567 3.433 23 O -0.939 6.939 24 O -0.942 6.942 25 C -0.714 4.714 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.146 0.854 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.153 0.847 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 17.723 2.857 -6.228 19.001 hybrid contribution -1.267 0.104 -1.824 2.223 sum 16.457 2.961 -8.052 18.559 Atomic orbital electron populations 1.22816 0.93345 1.07811 0.99390 1.21100 0.97554 0.94757 0.96309 1.21854 0.99753 0.96476 1.01219 1.22834 0.99181 1.02967 0.97515 1.22136 0.99369 0.87236 0.96506 1.62108 1.02226 1.12735 1.47212 1.21142 0.87968 0.95113 0.95996 1.20957 0.90796 1.43768 0.97859 0.90205 1.24876 0.96274 0.95496 0.96625 1.69879 1.01224 1.48615 1.33940 0.87092 0.77954 0.79629 0.86444 1.20203 1.21129 1.19006 1.23009 0.91260 1.01284 0.96118 1.21641 0.92214 1.01446 0.98963 1.21605 0.94185 1.00947 0.93421 0.88838 1.22400 0.94324 1.00556 0.98561 1.30614 1.10491 1.11486 1.19132 1.09204 0.78394 0.75413 0.80281 1.93616 1.73007 1.46777 1.80462 1.93604 1.68015 1.47310 1.85320 1.30572 1.15544 1.12408 1.12893 0.93266 0.95355 0.85427 0.93550 0.93491 0.92839 0.89513 0.93718 0.92957 0.90428 0.92760 0.94357 0.96773 0.92669 0.91814 0.91706 0.91692 0.90407 0.88169 0.89353 0.84692 0.84559 0.84290 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 7.58 37.16 0.28 -3.10 16 2 C -0.10 -1.52 0.77 -154.51 -0.12 -1.64 16 3 C -0.14 -1.80 8.34 37.16 0.31 -1.49 16 4 C -0.17 -2.48 6.24 37.16 0.23 -2.25 16 5 C 0.08 1.28 4.79 -3.82 -0.02 1.26 16 6 N -0.52 -9.47 4.57 -236.08 -1.08 -10.55 16 7 C 0.12 2.65 2.39 -4.98 -0.01 2.64 16 8 C -0.50 -12.92 7.58 -34.44 -0.26 -13.18 16 9 H 0.08 2.33 7.94 -52.49 -0.42 1.92 16 10 C 0.07 1.87 5.16 -17.82 -0.09 1.77 16 11 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 12 Si 0.86 20.18 26.86 -169.99 -4.57 15.61 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 16 C 0.01 0.16 3.71 -3.83 -0.01 0.14 16 17 C -0.10 -1.15 4.58 -26.74 -0.12 -1.27 16 18 C -0.08 -0.66 2.60 -89.55 -0.23 -0.89 16 19 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.12 -0.83 5.20 -25.19 -0.13 -0.96 16 21 C -0.59 -3.50 7.31 38.24 0.28 -3.22 16 22 S 2.38 19.77 6.11 -107.50 -0.66 19.11 16 23 O -0.94 -11.21 18.15 -57.71 -1.05 -12.26 16 24 O -0.95 -11.21 18.14 -57.71 -1.05 -12.26 16 25 C -0.58 -4.16 6.75 37.77 0.25 -3.91 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 2.82 2.00 -51.93 -0.10 2.72 16 29 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.41 3.26 -51.93 -0.17 1.24 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.05 0.64 6.62 -51.93 -0.34 0.29 16 35 H 0.08 1.50 7.67 -51.93 -0.40 1.10 16 36 H 0.05 0.78 6.34 -51.93 -0.33 0.46 16 37 H 0.04 0.82 1.68 -51.93 -0.09 0.73 16 38 H 0.01 0.32 7.07 -51.93 -0.37 -0.05 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.06 0.90 7.62 -51.93 -0.40 0.51 16 41 H 0.07 0.81 2.60 -51.93 -0.13 0.67 16 42 H 0.06 0.69 6.87 -51.93 -0.36 0.33 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.67 7.49 -51.93 -0.39 0.28 16 45 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 46 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.14 0.64 8.14 -51.92 -0.42 0.22 16 48 H 0.14 0.92 7.89 -51.93 -0.41 0.51 16 49 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -33.49 362.50 -9.94 -43.43 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.14 Total: 3.04 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 0.36 Total: -26.10 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.31 Total: -36.03 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -2.09 Total: -24.52 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.57 Total: 15.61 kcal Atomic # 16 Polarization: 19.77 SS G_CDS: -0.66 Total: 19.11 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.49 -9.94 -43.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611171094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.238 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds