Wall clock time and date at job start Tue Mar 31 2020 11:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.52999 * 109.47110 * 239.99982 * 2 1 3 5 5 C 1.52999 * 109.47542 * 119.99749 * 2 1 3 6 6 N 1.46902 * 109.46986 * 83.41540 * 5 2 1 7 7 C 1.46897 * 111.00010 * 314.96915 * 6 5 2 8 8 C 1.50703 * 109.46964 * 285.98802 * 7 6 5 9 9 H 1.08002 * 119.99887 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00244 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99884 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99583 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47301 * 90.00826 * 12 10 8 14 14 H 1.48504 * 109.47316 * 210.00394 * 12 10 8 15 15 H 1.48494 * 109.47573 * 330.00434 * 12 10 8 16 16 C 1.46900 * 110.99836 * 78.92111 * 6 5 2 17 17 C 1.52991 * 109.47367 * 75.61604 * 16 6 5 18 18 C 1.53001 * 109.47273 * 174.56311 * 17 16 6 19 19 H 1.08997 * 109.64155 * 305.42752 * 18 17 16 20 20 C 1.53873 * 109.64616 * 65.72659 * 18 17 16 21 21 C 1.55054 * 106.62309 * 167.03414 * 20 18 17 22 22 S 1.83289 * 102.56582 * 317.56736 * 21 20 18 23 23 O 1.42102 * 109.34911 * 269.81273 * 22 21 20 24 24 O 1.42097 * 109.35492 * 136.61214 * 22 21 20 25 25 C 1.54169 * 109.64751 * 185.00197 * 18 17 16 26 26 H 1.09003 * 109.47139 * 302.49929 * 1 2 3 27 27 H 1.08992 * 109.47029 * 62.49781 * 1 2 3 28 28 H 1.08998 * 109.46733 * 182.50303 * 1 2 3 29 29 H 1.08996 * 109.47289 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47389 * 299.99920 * 3 2 1 31 31 H 1.08996 * 109.47310 * 60.00202 * 3 2 1 32 32 H 1.09000 * 109.47139 * 291.04294 * 4 2 1 33 33 H 1.09000 * 109.47155 * 51.04022 * 4 2 1 34 34 H 1.09006 * 109.47105 * 171.04117 * 4 2 1 35 35 H 1.08999 * 109.47141 * 323.41845 * 5 2 1 36 36 H 1.08997 * 109.47411 * 203.41433 * 5 2 1 37 37 H 1.08992 * 109.47780 * 45.98699 * 7 6 5 38 38 H 1.09005 * 109.47444 * 165.99249 * 7 6 5 39 39 H 0.97010 * 119.99671 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.47322 * 195.62201 * 16 6 5 41 41 H 1.09001 * 109.46937 * 315.61521 * 16 6 5 42 42 H 1.09002 * 109.47395 * 294.56248 * 17 16 6 43 43 H 1.09006 * 109.47144 * 54.56312 * 17 16 6 44 44 H 1.08997 * 110.02500 * 286.32106 * 20 18 17 45 45 H 1.08994 * 110.03013 * 47.74708 * 20 18 17 46 46 H 1.08991 * 110.78890 * 199.29543 * 21 20 18 47 47 H 1.09007 * 110.78625 * 75.83227 * 21 20 18 48 48 H 1.09004 * 110.31482 * 331.14112 * 25 18 17 49 49 H 1.09000 * 110.32206 * 93.33303 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 7 2.0536 -2.1700 1.0070 7 6 0.8102 -2.6069 0.3583 8 6 -0.3115 -2.5977 1.3647 9 1 -0.1197 -2.2977 2.3843 10 6 -1.5824 -2.9732 0.9840 11 7 -2.5613 -2.9647 1.8622 12 14 -1.9139 -3.4928 -0.7794 13 1 -1.7104 -4.9579 -0.9104 14 1 -3.3138 -3.1533 -1.1407 15 1 -0.9813 -2.7802 -1.6891 16 6 3.2266 -2.5601 0.2134 17 6 4.4720 -2.5432 1.1018 18 6 5.6687 -3.0786 0.3129 19 1 5.4307 -4.0628 -0.0906 20 6 6.0004 -2.1159 -0.8407 21 6 7.3940 -2.5315 -1.3786 22 16 8.3362 -2.8516 0.1607 23 8 8.9742 -1.6531 0.5800 24 8 9.0942 -4.0440 0.0094 25 6 6.8964 -3.1814 1.2396 26 1 -0.3633 0.5522 0.8667 27 1 -0.3633 0.4745 -0.9115 28 1 -0.3633 -1.0267 0.0449 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8132 -1.7847 -1.1728 33 1 1.5519 -0.3082 -2.1320 34 1 3.1182 -0.5847 -1.3329 35 1 1.3832 -0.4996 2.0904 36 1 3.0503 -0.3816 1.4778 37 1 0.5695 -1.9286 -0.4602 38 1 0.9394 -3.6163 -0.0325 39 1 -3.4556 -3.2286 1.5942 40 1 3.0782 -3.5638 -0.1853 41 1 3.3581 -1.8580 -0.6100 42 1 4.6760 -1.5215 1.4222 43 1 4.3030 -3.1714 1.9764 44 1 5.2535 -2.2070 -1.6294 45 1 6.0328 -1.0902 -0.4734 46 1 7.8468 -1.7198 -1.9477 47 1 7.3214 -3.4358 -1.9829 48 1 6.8371 -2.4338 2.0307 49 1 6.9652 -4.1816 1.6673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611171094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:50 Heat of formation + Delta-G solvation = -51.314954 kcal Electronic energy + Delta-G solvation = -26625.678550 eV Core-core repulsion = 23101.977598 eV Total energy + Delta-G solvation = -3523.700952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15972 -38.29529 -37.98994 -36.97956 -35.21492 -34.64445 -32.12846 -30.74724 -29.52615 -28.51623 -27.63366 -26.37465 -25.11298 -23.58970 -21.74193 -21.09110 -19.75638 -19.65219 -18.89827 -17.71880 -17.35931 -16.76217 -16.63218 -16.53465 -16.10604 -15.79781 -15.28491 -15.13582 -14.89448 -14.66244 -14.47866 -14.25821 -13.80642 -13.51286 -13.29199 -13.17802 -13.11972 -13.04592 -12.89830 -12.85071 -12.64663 -12.45318 -12.37476 -12.32720 -12.24038 -11.91688 -11.82169 -11.73732 -11.60234 -11.55041 -11.37275 -11.17345 -11.02419 -10.91403 -10.83381 -10.67100 -8.50739 -8.20216 -6.17436 -0.80344 1.35865 1.36576 1.45406 1.69971 2.37385 2.73862 3.11775 3.14437 3.37105 3.53993 3.75889 3.82282 4.00213 4.03283 4.05472 4.16665 4.22100 4.39215 4.51144 4.59116 4.68238 4.71381 4.73902 4.77914 4.81054 4.89889 4.90479 4.95591 5.00826 5.07296 5.09698 5.11976 5.16984 5.19068 5.19788 5.32658 5.37337 5.41099 5.46894 5.54088 5.58854 5.71621 5.92175 6.15847 6.60523 6.86427 6.88449 7.41685 8.97110 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.003394 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.797171 B = 8247.873234 C = 8792.208932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.168 4.168 5 C 0.079 3.921 6 N -0.543 5.543 7 C 0.133 3.867 8 C -0.486 4.486 9 H 0.029 0.971 10 C 0.010 3.990 11 N -0.952 5.952 12 Si 0.925 3.075 13 H -0.271 1.271 14 H -0.289 1.289 15 H -0.237 1.237 16 C 0.010 3.990 17 C -0.099 4.099 18 C -0.080 4.080 19 H 0.104 0.896 20 C -0.126 4.126 21 C -0.562 4.562 22 S 2.385 3.615 23 O -0.983 6.983 24 O -0.988 6.988 25 C -0.576 4.576 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.144 0.856 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.898 3.771 -10.178 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.224 4.224 5 C -0.049 4.049 6 N -0.265 5.265 7 C 0.007 3.993 8 C -0.525 4.525 9 H 0.047 0.953 10 C -0.187 4.187 11 N -0.594 5.594 12 Si 0.749 3.251 13 H -0.197 1.197 14 H -0.215 1.215 15 H -0.160 1.160 16 C -0.117 4.117 17 C -0.138 4.138 18 C -0.100 4.100 19 H 0.123 0.877 20 C -0.164 4.164 21 C -0.695 4.695 22 S 2.575 3.425 23 O -0.980 6.980 24 O -0.985 6.985 25 C -0.707 4.707 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.133 0.867 45 H 0.116 0.884 46 H 0.172 0.828 47 H 0.174 0.826 48 H 0.162 0.838 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 19.799 3.484 -9.487 22.229 hybrid contribution -1.918 -0.053 -0.692 2.040 sum 17.881 3.431 -10.179 20.859 Atomic orbital electron populations 1.22762 0.96284 1.05465 0.99114 1.21071 0.95098 0.96851 0.96563 1.21795 1.01326 0.94211 1.01429 1.22784 1.01538 1.01494 0.96603 1.22066 1.00125 0.86856 0.95866 1.61931 1.02384 1.13712 1.48495 1.20945 0.88097 0.95329 0.94937 1.21166 0.92620 1.42003 0.96685 0.95280 1.25700 0.95997 0.95867 1.01100 1.70058 1.01764 1.51063 1.36551 0.86056 0.78010 0.79532 0.81468 1.19653 1.21492 1.16046 1.23134 0.90100 1.01620 0.96804 1.21566 0.92202 1.01774 0.98284 1.21597 0.92867 1.01874 0.93651 0.87750 1.22510 0.94898 1.00669 0.98347 1.30462 1.08909 1.13135 1.16981 1.08896 0.78573 0.73742 0.81276 1.93559 1.74763 1.47909 1.81812 1.93546 1.70030 1.48680 1.86235 1.30482 1.14224 1.13233 1.12788 0.95312 0.94046 0.88451 0.90940 0.92529 0.93531 0.91168 0.92939 0.89422 0.94551 0.89756 0.92836 0.97054 0.92893 0.92031 0.89389 0.90979 0.92247 0.86744 0.88442 0.82806 0.82647 0.83752 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.76 7.58 71.98 0.55 -6.22 16 2 C -0.09 -2.78 0.77 -52.18 -0.04 -2.82 16 3 C -0.13 -3.01 8.34 71.98 0.60 -2.41 16 4 C -0.17 -4.18 6.24 71.98 0.45 -3.73 16 5 C 0.08 2.59 4.79 86.30 0.41 3.00 16 6 N -0.54 -19.22 4.57 -900.81 -4.12 -23.34 16 7 C 0.13 5.66 2.39 85.56 0.20 5.87 16 8 C -0.49 -26.37 7.58 25.60 0.19 -26.17 16 9 H 0.03 1.82 7.94 -2.91 -0.02 1.80 16 10 C 0.01 0.54 5.16 84.66 0.44 0.98 16 11 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 12 Si 0.93 41.76 26.86 68.60 1.84 43.60 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 16 C 0.01 0.25 3.71 86.30 0.32 0.58 16 17 C -0.10 -1.91 4.58 30.59 0.14 -1.77 16 18 C -0.08 -0.99 2.60 -10.10 -0.03 -1.02 16 19 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 20 C -0.13 -1.12 5.20 31.59 0.16 -0.95 16 21 C -0.56 -4.26 7.31 72.69 0.53 -3.73 16 22 S 2.39 35.13 6.11 -56.49 -0.34 34.78 16 23 O -0.98 -22.28 18.15 -127.49 -2.31 -24.60 16 24 O -0.99 -22.50 18.14 -127.49 -2.31 -24.81 16 25 C -0.58 -6.85 6.75 72.38 0.49 -6.36 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 4.31 2.00 -2.39 0.00 4.31 16 29 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 2.00 3.26 -2.39 -0.01 2.00 16 33 H 0.05 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.09 1.57 6.62 -2.38 -0.02 1.56 16 35 H 0.04 1.46 7.67 -2.39 -0.02 1.45 16 36 H 0.08 2.21 6.34 -2.39 -0.02 2.20 16 37 H 0.05 2.19 1.68 -2.39 0.00 2.18 16 38 H 0.01 0.49 7.07 -2.38 -0.02 0.48 16 39 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 40 H 0.06 1.55 7.62 -2.38 -0.02 1.54 16 41 H 0.09 1.76 2.60 -2.39 -0.01 1.75 16 42 H 0.07 1.28 6.87 -2.39 -0.02 1.26 16 43 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.11 0.80 7.49 -2.39 -0.02 0.79 16 45 H 0.10 0.75 8.09 -2.39 -0.02 0.73 16 46 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.16 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.14 1.60 7.89 -2.39 -0.02 1.58 16 49 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -77.45 362.50 -1.65 -79.10 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.88 Total: 18.16 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 4.42 Total: -44.76 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -3.82 Total: -81.47 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -4.63 Total: -49.41 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.84 Total: 43.60 kcal Atomic # 16 Polarization: 35.13 SS G_CDS: -0.34 Total: 34.78 kcal Total: -77.45 -1.65 -79.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611171094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.784 kcal (2) G-P(sol) polarization free energy of solvation -77.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds