Wall clock time and date at job start Tue Mar 31 2020 11:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47256 * 2 1 4 4 C 1.53000 * 109.47183 * 120.00249 * 2 1 3 5 5 C 1.53003 * 109.47159 * 174.99787 * 4 2 1 6 6 N 1.46899 * 109.47354 * 184.15960 * 5 4 2 7 7 C 1.46891 * 111.00263 * 160.07767 * 6 5 4 8 8 C 1.50701 * 109.47161 * 288.09147 * 7 6 5 9 9 H 1.07995 * 120.00073 * 355.72960 * 8 7 6 10 10 C 1.37877 * 120.00387 * 175.73527 * 8 7 6 11 11 N 1.31519 * 119.99691 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00484 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46846 * 59.99920 * 12 10 8 14 14 H 1.48505 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47073 * 299.99692 * 12 10 8 16 16 C 1.46897 * 110.99773 * 284.03475 * 6 5 4 17 17 C 1.53008 * 109.46913 * 169.99764 * 16 6 5 18 18 C 1.53004 * 109.46955 * 179.97438 * 17 16 6 19 19 H 1.08999 * 109.64286 * 54.57042 * 18 17 16 20 20 C 1.53876 * 109.64553 * 175.00315 * 18 17 16 21 21 C 1.55048 * 106.62346 * 166.90206 * 20 18 17 22 22 S 1.83289 * 102.56627 * 317.56148 * 21 20 18 23 23 O 1.42101 * 109.35171 * 136.61306 * 22 21 20 24 24 O 1.42097 * 109.35434 * 269.81699 * 22 21 20 25 25 C 1.54166 * 109.53850 * 294.20700 * 18 17 16 26 26 H 1.09004 * 109.47025 * 299.99936 * 1 2 3 27 27 H 1.09000 * 109.47563 * 59.99977 * 1 2 3 28 28 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46726 * 239.99654 * 2 1 3 30 30 H 1.09002 * 109.46938 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47185 * 300.00107 * 3 2 1 32 32 H 1.09000 * 109.47535 * 60.00150 * 3 2 1 33 33 H 1.09001 * 109.47214 * 54.99878 * 4 2 1 34 34 H 1.08993 * 109.47068 * 294.99711 * 4 2 1 35 35 H 1.08996 * 109.47258 * 64.15800 * 5 4 2 36 36 H 1.09001 * 109.47030 * 304.16078 * 5 4 2 37 37 H 1.09004 * 109.47339 * 48.08862 * 7 6 5 38 38 H 1.09003 * 109.47479 * 168.08959 * 7 6 5 39 39 H 0.97003 * 120.00141 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.47491 * 50.00210 * 16 6 5 41 41 H 1.08997 * 109.47051 * 289.99219 * 16 6 5 42 42 H 1.08997 * 109.46678 * 59.99948 * 17 16 6 43 43 H 1.08998 * 109.47137 * 300.00038 * 17 16 6 44 44 H 1.09001 * 110.03041 * 47.60296 * 20 18 17 45 45 H 1.09005 * 110.06283 * 286.21188 * 20 18 17 46 46 H 1.09004 * 110.78488 * 199.29335 * 21 20 18 47 47 H 1.08998 * 110.95339 * 75.91101 * 21 20 18 48 48 H 1.09003 * 110.31829 * 93.39855 * 25 18 17 49 49 H 1.09002 * 110.31775 * 331.21345 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0463 -1.6101 2.3365 7 6 5.3939 -2.1384 2.0867 8 6 5.3180 -3.2479 1.0697 9 1 4.3579 -3.5788 0.7022 10 6 6.4742 -3.8407 0.6083 11 7 7.6434 -3.4375 1.0555 12 14 6.3800 -5.2164 -0.6518 13 1 5.7178 -4.7154 -1.8829 14 1 7.7516 -5.6802 -0.9817 15 1 5.5958 -6.3468 -0.0928 16 6 4.0150 -0.8079 3.5668 17 6 4.2807 -1.7122 4.7721 18 6 4.2487 -0.8767 6.0534 19 1 3.3063 -0.3323 6.1124 20 6 4.3907 -1.7995 7.2765 21 6 4.6866 -0.8831 8.4917 22 16 5.8949 0.3119 7.8051 23 8 5.5616 1.6223 8.2422 24 8 7.2115 -0.1870 7.9968 25 6 5.4241 0.1209 6.0479 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 4.0024 0.1667 1.2165 36 1 3.8563 -1.3293 0.2632 37 1 6.0324 -1.3407 1.7070 38 1 5.8106 -2.5258 3.0165 39 1 8.4569 -3.8548 0.7313 40 1 3.0355 -0.3414 3.6716 41 1 4.7820 -0.0352 3.5163 42 1 5.2602 -2.1787 4.6673 43 1 3.5137 -2.4850 4.8226 44 1 5.2150 -2.4963 7.1248 45 1 3.4634 -2.3487 7.4402 46 1 5.1284 -1.4542 9.3083 47 1 3.7829 -0.3721 8.8237 48 1 5.1061 1.0783 5.6350 49 1 6.2590 -0.2811 5.4738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611171171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:54 Heat of formation + Delta-G solvation = -98.384611 kcal Electronic energy + Delta-G solvation = -25483.164985 eV Core-core repulsion = 21957.422940 eV Total energy + Delta-G solvation = -3525.742046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.26420 -37.12772 -36.97459 -36.05387 -35.31118 -32.62942 -31.38912 -29.13259 -28.36926 -27.05223 -26.48326 -24.86921 -22.73819 -22.37553 -20.52180 -19.83030 -19.50168 -18.84739 -17.02246 -16.62303 -16.45217 -15.72047 -15.09419 -14.95578 -14.74937 -14.65946 -14.23759 -14.09139 -13.88026 -13.38335 -13.31602 -12.91857 -12.61337 -12.46508 -12.31066 -12.21383 -12.12792 -12.07858 -12.00457 -11.85118 -11.73467 -11.32444 -11.09527 -10.96883 -10.86616 -10.81736 -10.68803 -10.52067 -10.48359 -10.41677 -10.25170 -10.08922 -9.99983 -9.58630 -9.22807 -8.42660 -7.24989 -6.03756 -4.04905 -0.02375 2.44856 3.31749 3.36469 3.38914 3.50075 3.88814 4.22970 4.39681 4.46153 4.48995 4.68752 4.80523 4.87921 5.07982 5.16978 5.19680 5.28888 5.30488 5.36599 5.48588 5.59903 5.64447 5.68925 5.70390 5.72795 5.85339 5.89427 5.91526 5.93598 6.05466 6.07179 6.10936 6.19012 6.25092 6.42238 6.45066 6.51846 6.61478 6.74649 6.82682 7.25523 7.34524 7.81800 8.10728 8.18914 8.54570 9.03563 9.59506 11.06636 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003954 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.043513 B = 7080.613156 C = 9420.031738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.106 4.106 5 C 0.063 3.937 6 N -0.538 5.538 7 C 0.189 3.811 8 C -0.505 4.505 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.055 3.945 17 C -0.107 4.107 18 C -0.079 4.079 19 H 0.090 0.910 20 C -0.117 4.117 21 C -0.588 4.588 22 S 2.382 3.618 23 O -0.948 6.948 24 O -0.939 6.939 25 C -0.585 4.585 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.081 0.919 37 H -0.008 1.008 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.137 0.863 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 7.183 9.302 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.065 4.065 6 N -0.262 5.262 7 C 0.064 3.936 8 C -0.544 4.544 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.074 4.074 17 C -0.146 4.146 18 C -0.100 4.100 19 H 0.108 0.892 20 C -0.155 4.155 21 C -0.718 4.718 22 S 2.566 3.434 23 O -0.945 6.945 24 O -0.936 6.936 25 C -0.715 4.715 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.100 0.900 37 H 0.010 0.990 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.155 0.845 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.421 7.332 9.804 16.077 hybrid contribution 0.086 -0.509 -1.197 1.303 sum -10.336 6.824 8.607 15.082 Atomic orbital electron populations 1.21820 0.95796 1.01466 1.01038 1.21118 0.95094 0.96200 0.99345 1.21875 1.01485 0.96176 1.00878 1.21622 0.96475 1.00209 0.96079 1.22020 0.93513 0.95140 0.95840 1.62076 1.28974 1.34235 1.00881 1.19796 0.82569 0.94287 0.96938 1.21121 0.92625 1.17557 1.23104 0.91980 1.24982 0.95362 0.97349 0.96884 1.69942 0.97450 1.42435 1.44058 0.86602 0.76904 0.82406 0.81730 1.20332 1.21414 1.20205 1.22058 0.99346 0.94569 0.91378 1.21667 1.04053 0.97841 0.90999 1.21598 0.96719 0.95026 0.96620 0.89196 1.22312 1.05591 0.97908 0.89702 1.30599 1.17467 1.15713 1.08010 1.09243 0.77242 0.76667 0.80226 1.93590 1.85278 1.35616 1.80021 1.93627 1.33918 1.81343 1.84697 1.30626 1.09174 1.08922 1.22778 0.93102 0.93250 0.92784 0.91161 0.92340 0.93370 0.93170 0.91450 0.93069 0.96265 0.90021 0.99031 0.95059 0.92883 0.92245 0.95937 0.90303 0.90501 0.89092 0.88394 0.84764 0.84749 0.84456 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.10 -1.25 2.92 -90.62 -0.26 -1.52 16 3 C -0.15 -1.74 8.95 37.15 0.33 -1.41 16 4 C -0.11 -1.55 4.74 -26.73 -0.13 -1.68 16 5 C 0.06 1.14 4.48 -3.82 -0.02 1.13 16 6 N -0.54 -10.60 4.38 -236.07 -1.03 -11.64 16 7 C 0.19 4.63 4.59 -4.98 -0.02 4.61 16 8 C -0.51 -13.66 8.30 -34.44 -0.29 -13.95 16 9 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 10 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 12 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.06 0.87 4.61 -3.82 -0.02 0.85 16 17 C -0.11 -1.47 4.54 -26.73 -0.12 -1.59 16 18 C -0.08 -0.78 2.61 -89.55 -0.23 -1.01 16 19 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.12 -0.96 5.80 -25.19 -0.15 -1.10 16 21 C -0.59 -4.23 7.31 38.24 0.28 -3.95 16 22 S 2.38 24.73 6.11 -107.50 -0.66 24.07 16 23 O -0.95 -12.74 18.15 -57.71 -1.05 -13.78 16 24 O -0.94 -13.60 18.14 -57.71 -1.05 -14.65 16 25 C -0.58 -5.91 5.78 37.77 0.22 -5.69 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.75 6.66 -51.93 -0.35 0.41 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.70 6.93 -51.93 -0.36 0.34 16 35 H 0.02 0.34 6.62 -51.93 -0.34 0.00 16 36 H 0.08 1.69 7.11 -51.93 -0.37 1.32 16 37 H -0.01 -0.22 8.05 -51.93 -0.42 -0.64 16 38 H 0.03 0.80 5.94 -51.93 -0.31 0.49 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 41 H 0.02 0.36 7.39 -51.93 -0.38 -0.02 16 42 H 0.08 1.26 6.16 -51.93 -0.32 0.94 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 49 H 0.14 1.61 7.80 -51.93 -0.40 1.21 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -34.11 389.63 -11.42 -45.54 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -9.06 Total: -1.15 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -0.16 Total: -25.10 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.30 Total: -37.05 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -2.09 Total: -28.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 24.73 SS G_CDS: -0.66 Total: 24.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.11 -11.42 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611171171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.848 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds