Wall clock time and date at job start Tue Mar 31 2020 11:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47256 * 2 1 4 4 C 1.53000 * 109.47183 * 120.00249 * 2 1 3 5 5 C 1.53003 * 109.47159 * 174.99787 * 4 2 1 6 6 N 1.46899 * 109.47354 * 184.15960 * 5 4 2 7 7 C 1.46891 * 111.00263 * 160.07767 * 6 5 4 8 8 C 1.50701 * 109.47161 * 288.09147 * 7 6 5 9 9 H 1.07995 * 120.00073 * 355.72960 * 8 7 6 10 10 C 1.37877 * 120.00387 * 175.73527 * 8 7 6 11 11 N 1.31519 * 119.99691 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00484 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46846 * 59.99920 * 12 10 8 14 14 H 1.48505 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47073 * 299.99692 * 12 10 8 16 16 C 1.46897 * 110.99773 * 284.03475 * 6 5 4 17 17 C 1.53008 * 109.46913 * 169.99764 * 16 6 5 18 18 C 1.53004 * 109.46955 * 179.97438 * 17 16 6 19 19 H 1.08999 * 109.64286 * 54.57042 * 18 17 16 20 20 C 1.53876 * 109.64553 * 175.00315 * 18 17 16 21 21 C 1.55048 * 106.62346 * 166.90206 * 20 18 17 22 22 S 1.83289 * 102.56627 * 317.56148 * 21 20 18 23 23 O 1.42101 * 109.35171 * 136.61306 * 22 21 20 24 24 O 1.42097 * 109.35434 * 269.81699 * 22 21 20 25 25 C 1.54166 * 109.53850 * 294.20700 * 18 17 16 26 26 H 1.09004 * 109.47025 * 299.99936 * 1 2 3 27 27 H 1.09000 * 109.47563 * 59.99977 * 1 2 3 28 28 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46726 * 239.99654 * 2 1 3 30 30 H 1.09002 * 109.46938 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47185 * 300.00107 * 3 2 1 32 32 H 1.09000 * 109.47535 * 60.00150 * 3 2 1 33 33 H 1.09001 * 109.47214 * 54.99878 * 4 2 1 34 34 H 1.08993 * 109.47068 * 294.99711 * 4 2 1 35 35 H 1.08996 * 109.47258 * 64.15800 * 5 4 2 36 36 H 1.09001 * 109.47030 * 304.16078 * 5 4 2 37 37 H 1.09004 * 109.47339 * 48.08862 * 7 6 5 38 38 H 1.09003 * 109.47479 * 168.08959 * 7 6 5 39 39 H 0.97003 * 120.00141 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.47491 * 50.00210 * 16 6 5 41 41 H 1.08997 * 109.47051 * 289.99219 * 16 6 5 42 42 H 1.08997 * 109.46678 * 59.99948 * 17 16 6 43 43 H 1.08998 * 109.47137 * 300.00038 * 17 16 6 44 44 H 1.09001 * 110.03041 * 47.60296 * 20 18 17 45 45 H 1.09005 * 110.06283 * 286.21188 * 20 18 17 46 46 H 1.09004 * 110.78488 * 199.29335 * 21 20 18 47 47 H 1.08998 * 110.95339 * 75.91101 * 21 20 18 48 48 H 1.09003 * 110.31829 * 93.39855 * 25 18 17 49 49 H 1.09002 * 110.31775 * 331.21345 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0463 -1.6101 2.3365 7 6 5.3939 -2.1384 2.0867 8 6 5.3180 -3.2479 1.0697 9 1 4.3579 -3.5788 0.7022 10 6 6.4742 -3.8407 0.6083 11 7 7.6434 -3.4375 1.0555 12 14 6.3800 -5.2164 -0.6518 13 1 5.7178 -4.7154 -1.8829 14 1 7.7516 -5.6802 -0.9817 15 1 5.5958 -6.3468 -0.0928 16 6 4.0150 -0.8079 3.5668 17 6 4.2807 -1.7122 4.7721 18 6 4.2487 -0.8767 6.0534 19 1 3.3063 -0.3323 6.1124 20 6 4.3907 -1.7995 7.2765 21 6 4.6866 -0.8831 8.4917 22 16 5.8949 0.3119 7.8051 23 8 5.5616 1.6223 8.2422 24 8 7.2115 -0.1870 7.9968 25 6 5.4241 0.1209 6.0479 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 4.0024 0.1667 1.2165 36 1 3.8563 -1.3293 0.2632 37 1 6.0324 -1.3407 1.7070 38 1 5.8106 -2.5258 3.0165 39 1 8.4569 -3.8548 0.7313 40 1 3.0355 -0.3414 3.6716 41 1 4.7820 -0.0352 3.5163 42 1 5.2602 -2.1787 4.6673 43 1 3.5137 -2.4850 4.8226 44 1 5.2150 -2.4963 7.1248 45 1 3.4634 -2.3487 7.4402 46 1 5.1284 -1.4542 9.3083 47 1 3.7829 -0.3721 8.8237 48 1 5.1061 1.0783 5.6350 49 1 6.2590 -0.2811 5.4738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611171171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:54 Heat of formation + Delta-G solvation = -121.956758 kcal Electronic energy + Delta-G solvation = -25484.187150 eV Core-core repulsion = 21957.422940 eV Total energy + Delta-G solvation = -3526.764211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.51386 -38.11566 -37.97214 -37.02571 -36.55562 -34.64245 -32.39362 -30.39058 -29.76221 -27.99514 -27.89128 -25.97999 -24.49361 -23.45935 -21.51696 -21.14155 -20.68274 -19.74215 -18.57001 -17.77578 -17.51802 -16.78393 -16.61646 -16.26945 -16.07269 -15.74378 -15.64605 -15.01760 -14.87177 -14.61526 -14.39774 -14.07360 -14.02225 -13.63808 -13.52941 -13.40670 -13.20574 -13.12910 -13.04468 -12.99634 -12.78196 -12.67219 -12.55704 -12.39151 -12.16637 -12.03891 -11.94937 -11.76479 -11.57459 -11.51807 -11.46822 -11.33894 -11.18910 -11.06649 -11.04286 -10.54288 -8.92177 -8.17737 -6.26949 -0.84297 1.40426 1.42607 1.50630 1.66393 2.40805 2.69612 3.06119 3.14445 3.26387 3.51638 3.71981 3.75583 3.98317 4.03349 4.13163 4.14832 4.18615 4.31165 4.39446 4.52704 4.55807 4.71295 4.72493 4.75993 4.83476 4.86404 4.89294 4.89656 4.91754 5.01943 5.03953 5.06214 5.15286 5.19095 5.21534 5.29910 5.35365 5.36473 5.44859 5.47492 5.57514 5.59526 5.70085 6.13732 6.43393 6.74267 6.90525 7.42667 8.92112 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003954 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.043513 B = 7080.613156 C = 9420.031738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.092 4.092 5 C 0.065 3.935 6 N -0.541 5.541 7 C 0.205 3.795 8 C -0.517 4.517 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.936 5.936 12 Si 0.962 3.038 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.267 1.267 16 C 0.051 3.949 17 C -0.103 4.103 18 C -0.074 4.074 19 H 0.123 0.877 20 C -0.120 4.120 21 C -0.553 4.553 22 S 2.384 3.616 23 O -0.981 6.981 24 O -0.990 6.990 25 C -0.587 4.587 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.046 0.954 37 H -0.046 1.046 38 H 0.016 0.984 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.015 0.985 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.154 0.846 47 H 0.167 0.833 48 H 0.149 0.851 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 7.042 10.150 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.130 4.130 5 C -0.063 4.063 6 N -0.265 5.265 7 C 0.078 3.922 8 C -0.555 4.555 9 H 0.077 0.923 10 C -0.195 4.195 11 N -0.577 5.577 12 Si 0.787 3.213 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.192 1.192 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.094 4.094 19 H 0.141 0.859 20 C -0.159 4.159 21 C -0.686 4.686 22 S 2.573 3.427 23 O -0.978 6.978 24 O -0.987 6.987 25 C -0.718 4.718 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.065 0.935 37 H -0.029 1.029 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.144 0.856 46 H 0.172 0.828 47 H 0.185 0.815 48 H 0.167 0.833 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.724 7.228 10.645 18.812 hybrid contribution 1.072 -0.451 -1.466 1.871 sum -12.652 6.776 9.180 17.037 Atomic orbital electron populations 1.21766 0.93696 1.01850 1.02257 1.21109 0.96785 0.96305 0.97571 1.21847 1.00295 0.95783 1.02230 1.21507 0.93149 1.00362 0.98002 1.22016 0.96226 0.94217 0.93824 1.62060 1.25577 1.35984 1.02910 1.19438 0.84605 0.92736 0.95383 1.21438 0.92528 1.18057 1.23495 0.92262 1.25848 0.94945 0.99852 0.98896 1.70078 0.98132 1.43894 1.45552 0.85546 0.77053 0.79420 0.79282 1.19514 1.21098 1.19171 1.22245 1.00730 0.94471 0.90219 1.21580 1.02190 0.98120 0.92252 1.21638 0.97798 0.94744 0.95196 0.85899 1.22384 1.06705 0.97685 0.89082 1.30409 1.16702 1.13671 1.07822 1.08981 0.77082 0.76609 0.80002 1.93539 1.85615 1.38211 1.80440 1.93558 1.37800 1.81972 1.85363 1.30595 1.08915 1.09731 1.22530 0.91927 0.92007 0.92852 0.92681 0.94181 0.91954 0.91914 0.92343 0.91230 0.96261 0.93488 1.02858 0.96555 0.92878 0.89176 0.96710 0.93706 0.89976 0.90089 0.85606 0.82769 0.81500 0.83277 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.10 -2.37 2.92 -10.80 -0.03 -2.40 16 3 C -0.14 -3.18 8.95 71.98 0.64 -2.54 16 4 C -0.09 -2.59 4.74 30.60 0.14 -2.44 16 5 C 0.07 2.42 4.48 86.30 0.39 2.80 16 6 N -0.54 -21.84 4.38 -900.81 -3.95 -25.78 16 7 C 0.20 10.58 4.59 85.56 0.39 10.98 16 8 C -0.52 -28.93 8.30 25.60 0.21 -28.71 16 9 H 0.06 3.28 7.79 -2.91 -0.02 3.26 16 10 C 0.00 0.13 5.46 84.65 0.46 0.59 16 11 N -0.94 -56.42 13.29 21.45 0.28 -56.14 16 12 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 C 0.05 1.59 4.61 86.31 0.40 1.99 16 17 C -0.10 -2.77 4.54 30.60 0.14 -2.63 16 18 C -0.07 -1.28 2.61 -10.10 -0.03 -1.31 16 19 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 20 C -0.12 -1.60 5.80 31.59 0.18 -1.41 16 21 C -0.55 -5.97 7.31 72.68 0.53 -5.44 16 22 S 2.38 48.49 6.11 -56.49 -0.34 48.15 16 23 O -0.98 -25.85 18.15 -127.49 -2.31 -28.16 16 24 O -0.99 -29.83 18.14 -127.49 -2.31 -32.14 16 25 C -0.59 -11.78 5.78 72.38 0.42 -11.36 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.01 6.66 -2.39 -0.02 1.00 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.70 6.93 -2.39 -0.02 1.69 16 35 H 0.02 0.70 6.62 -2.39 -0.02 0.69 16 36 H 0.05 2.04 7.11 -2.39 -0.02 2.02 16 37 H -0.05 -2.69 8.05 -2.39 -0.02 -2.71 16 38 H 0.02 0.89 5.94 -2.39 -0.01 0.88 16 39 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.09 2.26 6.71 -2.39 -0.02 2.24 16 41 H 0.01 0.48 7.39 -2.39 -0.02 0.47 16 42 H 0.04 1.51 6.16 -2.39 -0.01 1.49 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 45 H 0.13 1.11 8.14 -2.38 -0.02 1.10 16 46 H 0.15 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.12 3.01 7.80 -2.39 -0.02 2.99 16 Total: -1.00 -77.68 389.63 -1.20 -78.88 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.89 Total: 12.75 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 4.52 Total: -43.84 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.66 Total: -81.92 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -4.63 Total: -60.31 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -0.34 Total: 48.15 kcal Total: -77.68 -1.20 -78.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611171171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.080 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds