Wall clock time and date at job start Tue Mar 31 2020 11:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34704 * 117.00016 * 2 1 4 4 O 1.21472 * 120.00580 * 0.02562 * 3 2 1 5 5 C 1.47723 * 120.00096 * 179.97438 * 3 2 1 6 6 C 1.39655 * 120.15846 * 0.03568 * 5 3 2 7 7 C 1.37905 * 119.84930 * 180.02562 * 6 5 3 8 8 C 1.38361 * 120.23111 * 359.84686 * 7 6 5 9 9 C 1.38606 * 120.20266 * 0.14959 * 8 7 6 10 10 C 1.37898 * 120.12513 * 359.92488 * 9 8 7 11 11 C 1.51221 * 108.23427 * 179.97438 * 9 8 7 12 12 N 1.48048 * 105.67136 * 17.54005 * 11 9 8 13 13 C 1.46901 * 110.99798 * 212.94965 * 12 11 9 14 14 C 1.52997 * 109.46846 * 193.20537 * 13 12 11 15 15 C 1.53004 * 109.46936 * 174.68264 * 14 13 12 16 16 C 1.52995 * 109.47234 * 294.68293 * 14 13 12 17 17 C 1.53008 * 109.47104 * 54.68321 * 14 13 12 18 18 C 1.50699 * 109.46959 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99755 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00014 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99892 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99924 * 359.97438 * 20 18 17 23 23 H 1.48491 * 109.46978 * 90.00268 * 22 20 18 24 24 H 1.48503 * 109.46751 * 210.00380 * 22 20 18 25 25 H 1.48503 * 109.46707 * 330.00143 * 22 20 18 26 26 C 1.48033 * 103.90780 * 332.32393 * 12 11 9 27 27 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46578 * 299.99295 * 1 2 3 29 29 H 1.08995 * 109.47206 * 59.99260 * 1 2 3 30 30 H 1.08001 * 120.07204 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.88340 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.04254 * 179.97438 * 10 9 8 33 33 H 1.08997 * 110.20853 * 258.49160 * 11 9 8 34 34 H 1.09000 * 110.20669 * 136.59110 * 11 9 8 35 35 H 1.08997 * 109.46975 * 73.20584 * 13 12 11 36 36 H 1.08999 * 109.46996 * 313.20477 * 13 12 11 37 37 H 1.08997 * 109.47279 * 57.50439 * 15 14 13 38 38 H 1.09001 * 109.47139 * 177.50968 * 15 14 13 39 39 H 1.09008 * 109.46778 * 297.50831 * 15 14 13 40 40 H 1.08997 * 109.47584 * 73.55835 * 16 14 13 41 41 H 1.09003 * 109.47055 * 193.56356 * 16 14 13 42 42 H 1.09003 * 109.46849 * 313.55651 * 16 14 13 43 43 H 1.09001 * 109.46698 * 299.99681 * 17 14 13 44 44 H 1.09004 * 109.46995 * 60.00016 * 17 14 13 45 45 H 0.97007 * 120.00139 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.20849 * 146.73396 * 26 12 11 47 47 H 1.09004 * 110.20431 * 268.62594 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3027 0.1084 0.0004 7 6 5.6794 0.1880 0.0014 8 6 6.3059 1.4217 -0.0005 9 6 5.5535 2.5858 -0.0004 10 6 4.1761 2.5196 0.0001 11 6 6.5029 3.7628 -0.0020 12 7 7.8114 3.2205 -0.4327 13 6 8.9175 3.9356 0.2179 14 6 10.2324 3.5859 -0.4818 15 6 11.3641 4.4298 0.1082 16 6 10.5414 2.1019 -0.2745 17 6 10.1066 3.8765 -1.9787 18 6 11.4020 3.5326 -2.6677 19 1 12.2318 3.1452 -2.0953 20 6 11.5277 3.7127 -4.0289 21 7 12.6580 3.4121 -4.6303 22 14 10.0921 4.3821 -5.0191 23 1 10.1719 5.8641 -5.0664 24 1 10.1474 3.8390 -6.4001 25 1 8.8160 3.9752 -4.3778 26 6 7.7689 1.8048 -0.0023 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.8163 -0.8558 0.0002 31 1 6.2707 -0.7157 0.0009 32 1 3.5911 3.4275 0.0006 33 1 6.5815 4.1846 0.9999 34 1 6.1601 4.5220 -0.7051 35 1 8.9740 3.6411 1.2658 36 1 8.7448 5.0098 0.1511 37 1 11.4248 4.2560 1.1825 38 1 12.3081 4.1494 -0.3592 39 1 11.1656 5.4853 -0.0785 40 1 9.8744 1.5019 -0.8935 41 1 11.5755 1.9033 -0.5564 42 1 10.3947 1.8432 0.7741 43 1 9.3003 3.2753 -2.3989 44 1 9.8864 4.9338 -2.1263 45 1 12.7464 3.5384 -5.5880 46 1 8.3206 1.1808 -0.7054 47 1 8.1859 1.7033 0.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611270310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:08 Heat of formation + Delta-G solvation = -47.207870 kcal Electronic energy + Delta-G solvation = -26485.587810 eV Core-core repulsion = 22826.621003 eV Total energy + Delta-G solvation = -3658.966807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01023 -40.20708 -37.94428 -36.70874 -35.54864 -32.33040 -31.81279 -31.10403 -28.54358 -28.00473 -27.62926 -26.31021 -26.12637 -23.57695 -22.56308 -22.04824 -21.28124 -20.72504 -18.17661 -17.67817 -17.28950 -16.72777 -16.64600 -16.11093 -15.79210 -15.21119 -14.71051 -14.38331 -14.13704 -13.85836 -13.74048 -13.59834 -13.44084 -13.06932 -12.99758 -12.63682 -12.45638 -12.43242 -12.28401 -12.10658 -11.77791 -11.51775 -11.14088 -11.11488 -11.07672 -10.99097 -10.89868 -10.80738 -10.42056 -10.22364 -9.78356 -9.59605 -9.41215 -9.14097 -8.99876 -8.81509 -8.41446 -8.11452 -5.92673 -3.87832 0.44146 1.11673 2.27017 2.35041 3.40261 3.48060 3.50153 3.56941 4.04919 4.19438 4.36189 4.48344 4.57685 4.73411 4.75698 4.83637 5.05838 5.11518 5.19746 5.20715 5.35800 5.39649 5.43537 5.48471 5.56437 5.71581 5.73318 5.78818 5.85172 5.92249 6.00116 6.01747 6.11959 6.13000 6.30204 6.32650 6.33006 6.57560 6.64553 6.70685 6.90964 6.93230 7.10620 7.18931 7.27725 7.44083 7.48254 7.70985 7.95857 8.67208 9.13523 9.72052 11.20588 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.002948 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.380798 B = 9496.648385 C =10116.919531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.508 6.508 5 C -0.135 4.135 6 C -0.059 4.059 7 C -0.116 4.116 8 C -0.055 4.055 9 C -0.112 4.112 10 C -0.035 4.035 11 C 0.074 3.926 12 N -0.488 5.488 13 C 0.055 3.945 14 C -0.047 4.047 15 C -0.128 4.128 16 C -0.132 4.132 17 C 0.006 3.994 18 C -0.508 4.508 19 H 0.073 0.927 20 C 0.064 3.936 21 N -0.910 5.910 22 Si 0.873 3.127 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.260 1.260 26 C 0.065 3.935 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.033 0.967 44 H 0.004 0.996 45 H 0.260 0.740 46 H 0.109 0.891 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.686 -6.856 13.506 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.397 6.397 5 C -0.136 4.136 6 C -0.077 4.077 7 C -0.134 4.134 8 C -0.056 4.056 9 C -0.113 4.113 10 C -0.054 4.054 11 C -0.053 4.053 12 N -0.211 5.211 13 C -0.073 4.073 14 C -0.048 4.048 15 C -0.186 4.186 16 C -0.189 4.189 17 C -0.032 4.032 18 C -0.546 4.546 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.550 5.550 22 Si 0.701 3.299 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.184 1.184 26 C -0.062 4.062 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.023 0.977 45 H 0.069 0.931 46 H 0.127 0.873 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.731 -6.491 12.760 24.378 hybrid contribution -1.031 0.412 0.138 1.119 sum -20.762 -6.079 12.898 25.187 Atomic orbital electron populations 1.23289 0.75904 1.03802 1.02693 1.86539 1.23605 1.32653 1.84392 1.21180 0.89080 0.81393 0.72514 1.90834 1.66831 1.36028 1.46022 1.18851 0.88722 0.94789 1.11224 1.21340 0.93411 0.97830 0.95129 1.20515 0.93944 0.97022 1.01952 1.21207 0.96918 0.93442 0.94055 1.20564 0.93052 0.96468 1.01170 1.20461 0.92900 0.96857 0.95168 1.21695 0.88473 0.95008 1.00139 1.65305 1.01117 1.01125 1.53566 1.22619 0.91715 0.98225 0.94717 1.20393 0.91005 0.95098 0.98263 1.21754 0.99931 0.99183 0.97736 1.22009 1.02794 0.96099 0.98011 1.19541 0.97706 0.95942 0.89992 1.21246 0.98366 1.42304 0.92682 0.90872 1.24995 0.95327 0.95319 0.97944 1.69920 1.25228 1.49873 1.09970 0.86874 0.84547 0.79239 0.79288 1.20723 1.21870 1.18430 1.22189 0.91069 0.92107 1.00820 0.87905 0.91810 0.91755 0.84217 0.84812 0.84598 0.92118 0.88859 0.95008 0.90901 0.95088 0.91076 0.93584 0.92268 0.92044 0.95407 0.94882 0.97744 0.93062 0.87304 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.50 9.82 -40.50 -0.40 -3.90 16 3 C 0.51 6.13 7.90 34.61 0.27 6.41 16 4 O -0.51 -7.21 16.14 -19.24 -0.31 -7.52 16 5 C -0.13 -1.57 5.87 -104.98 -0.62 -2.19 16 6 C -0.06 -0.59 9.62 -39.17 -0.38 -0.97 16 7 C -0.12 -1.22 10.02 -39.66 -0.40 -1.61 16 8 C -0.06 -0.69 6.27 -104.18 -0.65 -1.34 16 9 C -0.11 -1.42 6.25 -104.36 -0.65 -2.07 16 10 C -0.04 -0.43 9.59 -39.20 -0.38 -0.80 16 11 C 0.07 0.96 6.55 -4.09 -0.03 0.93 16 12 N -0.49 -7.44 4.42 -234.88 -1.04 -8.47 16 13 C 0.05 0.84 3.87 -3.83 -0.01 0.82 16 14 C -0.05 -0.86 0.61 -154.51 -0.09 -0.96 16 15 C -0.13 -2.28 8.13 37.16 0.30 -1.97 16 16 C -0.13 -2.30 6.72 37.15 0.25 -2.05 16 17 C 0.01 0.13 2.85 -27.88 -0.08 0.05 16 18 C -0.51 -13.89 8.36 -34.44 -0.29 -14.18 16 19 H 0.07 2.13 6.02 -52.49 -0.32 1.81 16 20 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 21 N -0.91 -28.03 13.96 55.43 0.77 -27.26 16 22 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 26 C 0.07 0.87 4.88 -4.09 -0.02 0.85 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.14 1.11 7.61 -52.49 -0.40 0.71 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.57 7.65 -52.48 -0.40 1.17 16 33 H 0.06 0.69 7.81 -51.93 -0.41 0.28 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.43 7.52 -51.93 -0.39 0.04 16 36 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 1.43 6.68 -51.93 -0.35 1.08 16 39 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.06 1.04 5.32 -51.93 -0.28 0.76 16 41 H 0.06 1.19 7.05 -51.93 -0.37 0.82 16 42 H 0.03 0.40 7.54 -51.93 -0.39 0.01 16 43 H 0.03 0.80 6.52 -51.93 -0.34 0.46 16 44 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.11 1.55 5.87 -51.93 -0.30 1.25 16 47 H 0.07 0.82 6.95 -51.93 -0.36 0.46 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -32.50 369.44 -9.11 -41.60 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.23 Total: -1.47 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.80 Total: -16.02 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.26 Total: -35.73 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.71 Total: -11.42 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.50 -9.11 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611270310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.605 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds