Wall clock time and date at job start Tue Mar 31 2020 11:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34704 * 117.00016 * 2 1 4 4 O 1.21472 * 120.00580 * 0.02562 * 3 2 1 5 5 C 1.47723 * 120.00096 * 179.97438 * 3 2 1 6 6 C 1.39655 * 120.15846 * 0.03568 * 5 3 2 7 7 C 1.37905 * 119.84930 * 180.02562 * 6 5 3 8 8 C 1.38361 * 120.23111 * 359.84686 * 7 6 5 9 9 C 1.38606 * 120.20266 * 0.14959 * 8 7 6 10 10 C 1.37898 * 120.12513 * 359.92488 * 9 8 7 11 11 C 1.51221 * 108.23427 * 179.97438 * 9 8 7 12 12 N 1.48048 * 105.67136 * 17.54005 * 11 9 8 13 13 C 1.46901 * 110.99798 * 212.94965 * 12 11 9 14 14 C 1.52997 * 109.46846 * 193.20537 * 13 12 11 15 15 C 1.53004 * 109.46936 * 174.68264 * 14 13 12 16 16 C 1.52995 * 109.47234 * 294.68293 * 14 13 12 17 17 C 1.53008 * 109.47104 * 54.68321 * 14 13 12 18 18 C 1.50699 * 109.46959 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99755 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00014 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99892 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99924 * 359.97438 * 20 18 17 23 23 H 1.48491 * 109.46978 * 90.00268 * 22 20 18 24 24 H 1.48503 * 109.46751 * 210.00380 * 22 20 18 25 25 H 1.48503 * 109.46707 * 330.00143 * 22 20 18 26 26 C 1.48033 * 103.90780 * 332.32393 * 12 11 9 27 27 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46578 * 299.99295 * 1 2 3 29 29 H 1.08995 * 109.47206 * 59.99260 * 1 2 3 30 30 H 1.08001 * 120.07204 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.88340 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.04254 * 179.97438 * 10 9 8 33 33 H 1.08997 * 110.20853 * 258.49160 * 11 9 8 34 34 H 1.09000 * 110.20669 * 136.59110 * 11 9 8 35 35 H 1.08997 * 109.46975 * 73.20584 * 13 12 11 36 36 H 1.08999 * 109.46996 * 313.20477 * 13 12 11 37 37 H 1.08997 * 109.47279 * 57.50439 * 15 14 13 38 38 H 1.09001 * 109.47139 * 177.50968 * 15 14 13 39 39 H 1.09008 * 109.46778 * 297.50831 * 15 14 13 40 40 H 1.08997 * 109.47584 * 73.55835 * 16 14 13 41 41 H 1.09003 * 109.47055 * 193.56356 * 16 14 13 42 42 H 1.09003 * 109.46849 * 313.55651 * 16 14 13 43 43 H 1.09001 * 109.46698 * 299.99681 * 17 14 13 44 44 H 1.09004 * 109.46995 * 60.00016 * 17 14 13 45 45 H 0.97007 * 120.00139 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.20849 * 146.73396 * 26 12 11 47 47 H 1.09004 * 110.20431 * 268.62594 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3027 0.1084 0.0004 7 6 5.6794 0.1880 0.0014 8 6 6.3059 1.4217 -0.0005 9 6 5.5535 2.5858 -0.0004 10 6 4.1761 2.5196 0.0001 11 6 6.5029 3.7628 -0.0020 12 7 7.8114 3.2205 -0.4327 13 6 8.9175 3.9356 0.2179 14 6 10.2324 3.5859 -0.4818 15 6 11.3641 4.4298 0.1082 16 6 10.5414 2.1019 -0.2745 17 6 10.1066 3.8765 -1.9787 18 6 11.4020 3.5326 -2.6677 19 1 12.2318 3.1452 -2.0953 20 6 11.5277 3.7127 -4.0289 21 7 12.6580 3.4121 -4.6303 22 14 10.0921 4.3821 -5.0191 23 1 10.1719 5.8641 -5.0664 24 1 10.1474 3.8390 -6.4001 25 1 8.8160 3.9752 -4.3778 26 6 7.7689 1.8048 -0.0023 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.8163 -0.8558 0.0002 31 1 6.2707 -0.7157 0.0009 32 1 3.5911 3.4275 0.0006 33 1 6.5815 4.1846 0.9999 34 1 6.1601 4.5220 -0.7051 35 1 8.9740 3.6411 1.2658 36 1 8.7448 5.0098 0.1511 37 1 11.4248 4.2560 1.1825 38 1 12.3081 4.1494 -0.3592 39 1 11.1656 5.4853 -0.0785 40 1 9.8744 1.5019 -0.8935 41 1 11.5755 1.9033 -0.5564 42 1 10.3947 1.8432 0.7741 43 1 9.3003 3.2753 -2.3989 44 1 9.8864 4.9338 -2.1263 45 1 12.7464 3.5384 -5.5880 46 1 8.3206 1.1808 -0.7054 47 1 8.1859 1.7033 0.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611270310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:08 Heat of formation + Delta-G solvation = -65.905896 kcal Electronic energy + Delta-G solvation = -26486.398617 eV Core-core repulsion = 22826.621003 eV Total energy + Delta-G solvation = -3659.777614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90094 -41.13751 -39.11637 -37.58357 -36.79219 -34.40012 -32.69372 -32.18608 -29.76831 -29.42922 -28.64891 -27.55272 -27.21387 -24.75357 -24.10469 -23.15849 -22.25621 -21.57746 -19.53013 -18.80082 -18.70018 -18.11359 -17.44041 -17.11361 -16.82888 -16.30443 -16.16540 -15.53148 -15.32537 -15.16715 -14.72804 -14.65443 -14.47707 -14.31053 -14.25674 -13.95940 -13.84668 -13.63661 -13.20977 -13.10505 -13.02815 -12.79734 -12.73497 -12.60838 -12.37013 -12.11716 -12.00338 -11.85974 -11.74312 -11.69651 -11.66423 -11.24354 -10.95306 -10.72968 -10.63903 -10.04793 -9.98378 -9.14134 -8.17244 -6.14910 -0.43897 0.27454 1.37042 1.38418 1.40358 1.53885 1.60070 2.43991 2.64292 2.99722 3.19734 3.31524 3.45394 3.68044 3.91597 4.07629 4.15097 4.21641 4.28005 4.28806 4.32057 4.39517 4.46899 4.52476 4.54061 4.65930 4.70568 4.77378 4.82726 4.84819 4.91082 4.94218 4.98208 5.10867 5.16321 5.18558 5.22353 5.29065 5.42203 5.45711 5.54108 5.60688 5.69727 5.75068 5.80766 5.88666 5.94045 6.14433 6.48217 6.59269 6.93572 7.47815 8.99137 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.002948 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.380798 B = 9496.648385 C =10116.919531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.515 3.485 4 O -0.538 6.538 5 C -0.145 4.145 6 C -0.049 4.049 7 C -0.113 4.113 8 C -0.067 4.067 9 C -0.122 4.122 10 C -0.044 4.044 11 C 0.078 3.922 12 N -0.517 5.517 13 C 0.065 3.935 14 C -0.048 4.048 15 C -0.125 4.125 16 C -0.126 4.126 17 C 0.013 3.987 18 C -0.498 4.498 19 H 0.043 0.957 20 C 0.002 3.998 21 N -0.957 5.957 22 Si 0.935 3.065 23 H -0.275 1.275 24 H -0.292 1.292 25 H -0.250 1.250 26 C 0.068 3.932 27 H 0.137 0.863 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.025 0.975 44 H -0.001 1.001 45 H 0.260 0.740 46 H 0.096 0.904 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 -7.701 15.104 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.430 6.430 5 C -0.147 4.147 6 C -0.067 4.067 7 C -0.131 4.131 8 C -0.068 4.068 9 C -0.123 4.123 10 C -0.062 4.062 11 C -0.050 4.050 12 N -0.241 5.241 13 C -0.063 4.063 14 C -0.049 4.049 15 C -0.182 4.182 16 C -0.183 4.183 17 C -0.025 4.025 18 C -0.536 4.536 19 H 0.062 0.938 20 C -0.193 4.193 21 N -0.600 5.600 22 Si 0.761 3.239 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.174 1.174 26 C -0.059 4.059 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.113 0.887 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.039 -7.349 14.376 27.321 hybrid contribution -0.326 0.589 -0.311 0.741 sum -22.366 -6.761 14.065 27.272 Atomic orbital electron populations 1.23613 0.74131 1.06037 1.02638 1.86526 1.25326 1.31372 1.83771 1.21277 0.89230 0.81565 0.71780 1.90817 1.67466 1.37078 1.47618 1.18995 0.88863 0.95250 1.11549 1.21606 0.93243 0.98295 0.93590 1.20810 0.94265 0.97281 1.00774 1.21280 0.96403 0.94164 0.94950 1.20564 0.93169 0.96610 1.01964 1.20500 0.92849 0.97266 0.95611 1.21656 0.87401 0.94986 1.00919 1.65180 1.01982 1.02224 1.54673 1.22429 0.89783 0.98581 0.95514 1.20349 0.93403 0.95790 0.95345 1.21684 0.97976 0.99010 0.99561 1.21939 1.00657 0.95542 1.00164 1.19435 0.94706 0.95090 0.93257 1.21592 0.99298 1.40224 0.92519 0.93838 1.25835 0.97756 0.96283 0.99448 1.70066 1.27483 1.52215 1.10254 0.85872 0.81669 0.78740 0.77630 1.20040 1.21894 1.17356 1.22109 0.91681 0.90939 1.01142 0.84534 0.91743 0.92023 0.81784 0.82386 0.84789 0.90372 0.89327 0.92329 0.90510 0.91691 0.94475 0.93516 0.92611 0.95115 0.91869 0.95666 0.98306 0.93156 0.88656 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.24 9.82 -56.14 -0.55 -6.79 16 3 C 0.51 11.65 7.90 70.33 0.56 12.21 16 4 O -0.54 -14.99 16.14 19.93 0.32 -14.67 16 5 C -0.15 -3.15 5.87 -20.10 -0.12 -3.27 16 6 C -0.05 -0.86 9.62 22.53 0.22 -0.64 16 7 C -0.11 -2.05 10.02 22.22 0.22 -1.82 16 8 C -0.07 -1.52 6.27 -19.58 -0.12 -1.64 16 9 C -0.12 -2.90 6.25 -19.69 -0.12 -3.02 16 10 C -0.04 -1.01 9.59 22.52 0.22 -0.79 16 11 C 0.08 1.84 6.55 85.50 0.56 2.40 16 12 N -0.52 -14.64 4.42 -897.02 -3.96 -18.61 16 13 C 0.06 1.79 3.87 86.30 0.33 2.12 16 14 C -0.05 -1.71 0.61 -52.18 -0.03 -1.74 16 15 C -0.12 -4.29 8.13 71.98 0.59 -3.70 16 16 C -0.13 -4.25 6.72 71.98 0.48 -3.76 16 17 C 0.01 0.58 2.85 29.85 0.09 0.66 16 18 C -0.50 -27.89 8.36 25.60 0.21 -27.67 16 19 H 0.04 2.65 6.02 -2.91 -0.02 2.63 16 20 C 0.00 0.11 5.47 84.65 0.46 0.57 16 21 N -0.96 -60.79 13.96 21.45 0.30 -60.50 16 22 Si 0.94 46.23 27.47 68.60 1.88 48.12 16 23 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 26 C 0.07 1.66 4.88 85.51 0.42 2.08 16 27 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.16 2.01 7.61 -2.91 -0.02 1.98 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.13 3.05 7.65 -2.91 -0.02 3.03 16 33 H 0.08 1.56 7.81 -2.39 -0.02 1.54 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.33 7.52 -2.39 -0.02 1.31 16 36 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.50 6.68 -2.39 -0.02 1.49 16 39 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.06 1.91 5.32 -2.39 -0.01 1.90 16 41 H 0.03 1.19 7.05 -2.39 -0.02 1.18 16 42 H 0.06 1.66 7.54 -2.39 -0.02 1.64 16 43 H 0.03 1.20 6.52 -2.39 -0.02 1.18 16 44 H 0.00 -0.07 7.57 -2.38 -0.02 -0.08 16 45 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 46 H 0.10 2.56 5.87 -2.39 -0.01 2.55 16 47 H 0.08 1.72 6.95 -2.38 -0.02 1.71 16 Total: -1.00 -71.94 369.44 4.05 -67.88 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.91 Total: 11.07 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 5.16 Total: -26.50 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -3.67 Total: -79.10 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.23 Total: -21.46 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -71.94 4.05 -67.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611270310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.978 kcal (2) G-P(sol) polarization free energy of solvation -71.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds