Wall clock time and date at job start Tue Mar 31 2020 11:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47227 * 179.97438 * 3 2 1 5 5 C 1.33011 * 119.99901 * 138.71011 * 4 3 2 6 6 C 1.47071 * 120.00080 * 7.94595 * 5 4 3 7 7 O 1.21627 * 119.99836 * 16.59490 * 6 5 4 8 8 N 1.34779 * 119.99763 * 196.59579 * 6 5 4 9 9 C 1.46499 * 120.00365 * 5.78061 * 8 6 5 10 10 C 1.50698 * 109.46902 * 269.99789 * 9 8 6 11 11 H 1.08002 * 119.99658 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00457 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00490 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99442 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46775 * 90.00149 * 14 12 10 16 16 H 1.48500 * 109.47169 * 209.99718 * 14 12 10 17 17 H 1.48498 * 109.47254 * 330.00034 * 14 12 10 18 18 C 1.40021 * 119.99532 * 185.77353 * 8 6 5 19 19 C 1.38868 * 120.01530 * 237.68959 * 18 8 6 20 20 C 1.38085 * 119.98054 * 179.72066 * 19 18 8 21 21 C 1.38726 * 120.01685 * 0.28367 * 20 19 18 22 22 O 1.35975 * 119.98076 * 180.02562 * 21 20 19 23 23 C 1.42893 * 116.99537 * 179.97438 * 22 21 20 24 24 C 1.53007 * 109.46944 * 180.02562 * 23 22 21 25 25 C 1.38720 * 120.03231 * 359.97438 * 21 20 19 26 26 C 1.38077 * 120.02207 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.47401 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46960 * 299.99676 * 1 2 3 29 29 H 1.08996 * 109.47344 * 59.99409 * 1 2 3 30 30 H 1.09001 * 109.46960 * 240.00324 * 2 1 3 31 31 H 1.09003 * 109.46949 * 120.00678 * 2 1 3 32 32 H 1.09001 * 109.46912 * 60.00294 * 3 2 1 33 33 H 1.09003 * 109.47735 * 300.00197 * 3 2 1 34 34 H 1.07998 * 120.00116 * 318.72203 * 4 3 2 35 35 H 1.08006 * 120.00063 * 187.94434 * 5 4 3 36 36 H 1.08998 * 109.47051 * 29.99337 * 9 8 6 37 37 H 1.08999 * 109.47308 * 149.99642 * 9 8 6 38 38 H 0.96999 * 120.00136 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.01017 * 0.02562 * 19 18 8 40 40 H 1.08007 * 119.98973 * 180.30017 * 20 19 18 41 41 H 1.08995 * 109.47614 * 300.00000 * 23 22 21 42 42 H 1.09000 * 109.47275 * 60.00815 * 23 22 21 43 43 H 1.09003 * 109.47325 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47324 * 300.00345 * 24 23 22 45 45 H 1.09000 * 109.46716 * 60.00171 * 24 23 22 46 46 H 1.08009 * 119.98734 * 179.97438 * 25 21 20 47 47 H 1.08000 * 120.01382 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2124 2.3078 -0.7593 6 6 3.4879 3.3763 -1.4639 7 8 2.3541 3.6642 -1.1309 8 7 4.0804 4.0365 -2.4786 9 6 5.3947 3.6076 -2.9632 10 6 6.4728 4.3301 -2.1973 11 1 6.2056 5.0383 -1.4269 12 6 7.8003 4.0871 -2.4800 13 7 8.7411 4.7180 -1.8119 14 14 8.2623 2.8616 -3.8120 15 1 8.3705 3.5648 -5.1155 16 1 9.5667 2.2354 -3.4777 17 1 7.2171 1.8106 -3.9018 18 6 3.4397 5.1322 -3.0697 19 6 3.1691 5.1270 -4.4318 20 6 2.5320 6.2055 -5.0129 21 6 2.1676 7.2965 -4.2375 22 8 1.5398 8.3579 -4.8104 23 6 1.1928 9.4467 -3.9525 24 6 0.4994 10.5388 -4.7695 25 6 2.4424 7.3048 -2.8778 26 6 3.0784 6.2267 -2.2950 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 4.0868 0.7396 0.6180 35 1 5.2847 2.2259 -0.8590 36 1 5.5030 2.5329 -2.8167 37 1 5.4846 3.8405 -4.0243 38 1 9.6749 4.5473 -2.0110 39 1 3.4525 4.2775 -5.0355 40 1 2.3172 6.1994 -6.0713 41 1 0.5185 9.0939 -3.1722 42 1 2.0960 9.8520 -3.4963 43 1 0.2350 11.3696 -4.1152 44 1 1.1733 10.8918 -5.5501 45 1 -0.4039 10.1332 -5.2253 46 1 2.1587 8.1548 -2.2748 47 1 3.2919 6.2330 -1.2363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731192602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:05 Heat of formation + Delta-G solvation = -33.529421 kcal Electronic energy + Delta-G solvation = -26399.074120 eV Core-core repulsion = 22740.700456 eV Total energy + Delta-G solvation = -3658.373665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24205 -39.34426 -37.34210 -35.50688 -34.79300 -32.61527 -32.10555 -31.70678 -30.64341 -29.02495 -27.62807 -26.44170 -24.02709 -23.27485 -22.45125 -21.71646 -21.23295 -20.41399 -18.13545 -17.98335 -17.07271 -16.87666 -16.05532 -16.01083 -15.49652 -15.24918 -14.47070 -14.29263 -14.12529 -13.80341 -13.65698 -13.28364 -13.23684 -12.98097 -12.91246 -12.77202 -12.58576 -12.44606 -12.10365 -11.99196 -11.87762 -11.72932 -11.64985 -11.20388 -11.15133 -10.83426 -10.78760 -10.72818 -10.51664 -10.37471 -10.28886 -9.67931 -9.04242 -8.92837 -8.74485 -8.65295 -8.43562 -7.28292 -6.23682 -4.25685 1.62853 1.71023 1.98550 3.16388 3.23194 3.25142 3.31052 3.72247 3.78469 4.15028 4.24239 4.84523 4.88458 5.00452 5.07252 5.10695 5.14500 5.19101 5.21194 5.23861 5.31565 5.40277 5.65581 5.67228 5.68734 5.70178 5.78069 5.87803 5.89957 5.93371 5.93815 6.05321 6.14753 6.20906 6.32312 6.35229 6.50735 6.56530 6.58350 6.65124 6.83505 6.86520 6.92220 6.98501 7.37794 7.44711 7.68467 8.01685 8.34708 8.78927 8.86563 9.34434 10.88886 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007456 B = 0.004843 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.675368 B = 5779.823227 C = 8746.193297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.087 4.087 5 C -0.196 4.196 6 C 0.550 3.450 7 O -0.549 6.549 8 N -0.546 5.546 9 C 0.209 3.791 10 C -0.540 4.540 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.889 5.889 14 Si 0.869 3.131 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.263 1.263 18 C 0.142 3.858 19 C -0.093 4.093 20 C -0.140 4.140 21 C 0.110 3.890 22 O -0.320 6.320 23 C 0.054 3.946 24 C -0.151 4.151 25 C -0.194 4.194 26 C -0.066 4.066 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.125 0.875 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 0.069 -2.090 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.217 4.217 6 C 0.343 3.657 7 O -0.430 6.430 8 N -0.272 5.272 9 C 0.089 3.911 10 C -0.578 4.578 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.695 3.305 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.187 1.187 18 C 0.050 3.950 19 C -0.113 4.113 20 C -0.159 4.159 21 C 0.065 3.935 22 O -0.235 6.235 23 C -0.021 4.021 24 C -0.208 4.208 25 C -0.213 4.213 26 C -0.086 4.086 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.143 0.857 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.311 0.244 -2.097 14.465 hybrid contribution 0.903 -0.458 -0.340 1.068 sum -13.408 -0.214 -2.437 13.629 Atomic orbital electron populations 1.21747 0.96041 1.00992 1.01955 1.21557 0.95714 0.97256 1.01531 1.21202 0.92288 0.96090 1.05138 1.23607 0.96351 0.96322 0.94392 1.22898 1.01858 0.96727 1.00197 1.18658 0.85200 0.82768 0.79069 1.90659 1.18366 1.67705 1.66279 1.45530 1.19891 1.28228 1.33503 1.19967 0.79143 0.96291 0.95702 1.21320 0.89443 1.25817 1.21235 0.90290 1.24846 0.96197 0.95657 0.95880 1.69882 1.00386 1.41669 1.40689 0.86958 0.78702 0.82085 0.82724 1.19794 1.20778 1.18743 1.17481 0.97349 0.88390 0.91756 1.20901 0.98030 0.98208 0.94140 1.20121 1.03601 0.92431 0.99743 1.18854 0.95160 0.87967 0.91539 1.86027 1.73411 1.26288 1.37742 1.22720 0.99386 0.86578 0.93464 1.21764 1.01096 0.96988 1.00918 1.21002 1.05964 1.00551 0.93779 1.20929 0.96441 0.91087 1.00142 0.93183 0.92846 0.92687 0.92280 0.92460 0.90763 0.87969 0.86261 0.83858 0.94174 0.94928 0.92308 0.85334 0.85330 0.92209 0.92076 0.90607 0.91612 0.91689 0.85719 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.46 5.92 -26.73 -0.16 -1.61 16 3 C -0.11 -1.63 4.55 -27.89 -0.13 -1.75 16 4 C -0.09 -1.33 9.58 -36.12 -0.35 -1.68 16 5 C -0.20 -3.61 8.87 -37.81 -0.34 -3.94 16 6 C 0.55 11.33 7.06 -12.68 -0.09 11.24 16 7 O -0.55 -11.74 12.94 5.25 0.07 -11.68 16 8 N -0.55 -11.56 2.56 -116.03 -0.30 -11.86 16 9 C 0.21 4.66 3.75 -5.20 -0.02 4.64 16 10 C -0.54 -14.23 9.59 -34.44 -0.33 -14.56 16 11 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 14 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 18 C 0.14 2.87 5.12 -83.65 -0.43 2.44 16 19 C -0.09 -1.65 9.32 -39.40 -0.37 -2.02 16 20 C -0.14 -2.26 9.98 -39.46 -0.39 -2.65 16 21 C 0.11 1.78 6.69 -39.22 -0.26 1.52 16 22 O -0.32 -4.64 10.14 -19.66 -0.20 -4.84 16 23 C 0.05 0.59 5.46 37.16 0.20 0.79 16 24 C -0.15 -1.26 10.28 37.16 0.38 -0.87 16 25 C -0.19 -3.21 9.03 -39.46 -0.36 -3.56 16 26 C -0.07 -1.28 9.01 -39.41 -0.36 -1.63 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.77 5.31 -51.93 -0.28 1.50 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.14 2.75 6.59 -52.48 -0.35 2.41 16 36 H 0.04 0.86 5.70 -51.93 -0.30 0.56 16 37 H 0.03 0.71 6.84 -51.93 -0.36 0.36 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.07 7.87 -52.49 -0.41 1.65 16 40 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 42 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.12 1.73 6.29 -52.48 -0.33 1.40 16 47 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -30.22 385.15 -8.71 -38.93 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.47 Total: 6.51 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.71 Total: -12.89 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.48 Total: -36.81 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.13 Total: -16.51 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.22 -8.71 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731192602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.400 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds