Wall clock time and date at job start Tue Mar 31 2020 11:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47227 * 179.97438 * 3 2 1 5 5 C 1.33011 * 119.99901 * 138.71011 * 4 3 2 6 6 C 1.47071 * 120.00080 * 7.94595 * 5 4 3 7 7 O 1.21627 * 119.99836 * 16.59490 * 6 5 4 8 8 N 1.34779 * 119.99763 * 196.59579 * 6 5 4 9 9 C 1.46499 * 120.00365 * 5.78061 * 8 6 5 10 10 C 1.50698 * 109.46902 * 269.99789 * 9 8 6 11 11 H 1.08002 * 119.99658 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00457 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00490 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99442 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46775 * 90.00149 * 14 12 10 16 16 H 1.48500 * 109.47169 * 209.99718 * 14 12 10 17 17 H 1.48498 * 109.47254 * 330.00034 * 14 12 10 18 18 C 1.40021 * 119.99532 * 185.77353 * 8 6 5 19 19 C 1.38868 * 120.01530 * 237.68959 * 18 8 6 20 20 C 1.38085 * 119.98054 * 179.72066 * 19 18 8 21 21 C 1.38726 * 120.01685 * 0.28367 * 20 19 18 22 22 O 1.35975 * 119.98076 * 180.02562 * 21 20 19 23 23 C 1.42893 * 116.99537 * 179.97438 * 22 21 20 24 24 C 1.53007 * 109.46944 * 180.02562 * 23 22 21 25 25 C 1.38720 * 120.03231 * 359.97438 * 21 20 19 26 26 C 1.38077 * 120.02207 * 359.97438 * 25 21 20 27 27 H 1.09003 * 109.47401 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46960 * 299.99676 * 1 2 3 29 29 H 1.08996 * 109.47344 * 59.99409 * 1 2 3 30 30 H 1.09001 * 109.46960 * 240.00324 * 2 1 3 31 31 H 1.09003 * 109.46949 * 120.00678 * 2 1 3 32 32 H 1.09001 * 109.46912 * 60.00294 * 3 2 1 33 33 H 1.09003 * 109.47735 * 300.00197 * 3 2 1 34 34 H 1.07998 * 120.00116 * 318.72203 * 4 3 2 35 35 H 1.08006 * 120.00063 * 187.94434 * 5 4 3 36 36 H 1.08998 * 109.47051 * 29.99337 * 9 8 6 37 37 H 1.08999 * 109.47308 * 149.99642 * 9 8 6 38 38 H 0.96999 * 120.00136 * 180.02562 * 13 12 10 39 39 H 1.08001 * 120.01017 * 0.02562 * 19 18 8 40 40 H 1.08007 * 119.98973 * 180.30017 * 20 19 18 41 41 H 1.08995 * 109.47614 * 300.00000 * 23 22 21 42 42 H 1.09000 * 109.47275 * 60.00815 * 23 22 21 43 43 H 1.09003 * 109.47325 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47324 * 300.00345 * 24 23 22 45 45 H 1.09000 * 109.46716 * 60.00171 * 24 23 22 46 46 H 1.08009 * 119.98734 * 179.97438 * 25 21 20 47 47 H 1.08000 * 120.01382 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2124 2.3078 -0.7593 6 6 3.4879 3.3763 -1.4639 7 8 2.3541 3.6642 -1.1309 8 7 4.0804 4.0365 -2.4786 9 6 5.3947 3.6076 -2.9632 10 6 6.4728 4.3301 -2.1973 11 1 6.2056 5.0383 -1.4269 12 6 7.8003 4.0871 -2.4800 13 7 8.7411 4.7180 -1.8119 14 14 8.2623 2.8616 -3.8120 15 1 8.3705 3.5648 -5.1155 16 1 9.5667 2.2354 -3.4777 17 1 7.2171 1.8106 -3.9018 18 6 3.4397 5.1322 -3.0697 19 6 3.1691 5.1270 -4.4318 20 6 2.5320 6.2055 -5.0129 21 6 2.1676 7.2965 -4.2375 22 8 1.5398 8.3579 -4.8104 23 6 1.1928 9.4467 -3.9525 24 6 0.4994 10.5388 -4.7695 25 6 2.4424 7.3048 -2.8778 26 6 3.0784 6.2267 -2.2950 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 4.0868 0.7396 0.6180 35 1 5.2847 2.2259 -0.8590 36 1 5.5030 2.5329 -2.8167 37 1 5.4846 3.8405 -4.0243 38 1 9.6749 4.5473 -2.0110 39 1 3.4525 4.2775 -5.0355 40 1 2.3172 6.1994 -6.0713 41 1 0.5185 9.0939 -3.1722 42 1 2.0960 9.8520 -3.4963 43 1 0.2350 11.3696 -4.1152 44 1 1.1733 10.8918 -5.5501 45 1 -0.4039 10.1332 -5.2253 46 1 2.1587 8.1548 -2.2748 47 1 3.2919 6.2330 -1.2363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731192602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:04 Heat of formation + Delta-G solvation = -49.042307 kcal Electronic energy + Delta-G solvation = -26399.746810 eV Core-core repulsion = 22740.700456 eV Total energy + Delta-G solvation = -3659.046354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67074 -40.66562 -38.66132 -36.78886 -36.29644 -34.54278 -33.30951 -32.69989 -31.93523 -30.58589 -29.23517 -27.64430 -25.19264 -24.72192 -24.08483 -22.92023 -22.28296 -21.74041 -19.54791 -19.27638 -19.08483 -18.38596 -17.52172 -17.03867 -16.89681 -16.45008 -16.21371 -15.63804 -15.41244 -15.13317 -14.96477 -14.55158 -14.53082 -14.29657 -14.22185 -14.01262 -13.81296 -13.68792 -13.62683 -13.21842 -13.10034 -12.97829 -12.82809 -12.61827 -12.49107 -12.23398 -12.11315 -11.82394 -11.80464 -11.71463 -11.61399 -11.50344 -10.82479 -10.54713 -10.27650 -10.02453 -9.95021 -8.74195 -8.31000 -6.39039 0.24126 0.33068 0.60086 1.40118 1.40193 1.50534 2.14978 2.26353 2.30642 2.33491 2.74816 3.02800 3.74730 3.81415 3.87209 3.98986 4.06189 4.16021 4.18173 4.25535 4.27208 4.35366 4.38255 4.50750 4.58522 4.61494 4.64757 4.77136 4.78969 4.82951 4.95434 4.95788 4.98217 5.04439 5.06952 5.19429 5.19828 5.29983 5.31884 5.37122 5.43234 5.48514 5.51685 5.57596 5.69819 5.96397 6.17107 6.43714 6.53019 6.65832 7.21233 7.31220 8.85405 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007456 B = 0.004843 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.675368 B = 5779.823227 C = 8746.193297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.111 4.111 4 C -0.050 4.050 5 C -0.235 4.235 6 C 0.543 3.457 7 O -0.566 6.566 8 N -0.552 5.552 9 C 0.219 3.781 10 C -0.539 4.539 11 H 0.026 0.974 12 C 0.021 3.979 13 N -0.942 5.942 14 Si 0.940 3.060 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.234 1.234 18 C 0.105 3.895 19 C -0.097 4.097 20 C -0.137 4.137 21 C 0.113 3.887 22 O -0.324 6.324 23 C 0.041 3.959 24 C -0.145 4.145 25 C -0.193 4.193 26 C -0.089 4.089 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.147 0.853 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 -1.340 -3.533 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.148 4.148 4 C -0.070 4.070 5 C -0.255 4.255 6 C 0.337 3.663 7 O -0.449 6.449 8 N -0.278 5.278 9 C 0.099 3.901 10 C -0.577 4.577 11 H 0.045 0.955 12 C -0.178 4.178 13 N -0.581 5.581 14 Si 0.762 3.238 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.157 1.157 18 C 0.014 3.986 19 C -0.117 4.117 20 C -0.156 4.156 21 C 0.068 3.932 22 O -0.238 6.238 23 C -0.034 4.034 24 C -0.202 4.202 25 C -0.212 4.212 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.162 0.838 40 H 0.175 0.825 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.165 0.835 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.719 -1.152 -3.543 16.154 hybrid contribution 1.195 0.127 0.221 1.222 sum -14.524 -1.025 -3.322 14.935 Atomic orbital electron populations 1.21748 0.95305 1.02133 1.01538 1.21523 0.96364 0.94919 1.02639 1.21179 0.91794 0.98114 1.03699 1.24036 0.96828 0.94480 0.91622 1.22752 1.01253 0.98324 1.03211 1.19077 0.85203 0.83127 0.78910 1.90635 1.19099 1.68450 1.66722 1.45526 1.19471 1.28742 1.34015 1.19768 0.78600 0.96387 0.95374 1.21417 0.91085 1.24941 1.20303 0.95538 1.25774 0.95809 0.97760 0.98462 1.70048 1.00919 1.44025 1.43095 0.85824 0.78942 0.79924 0.79077 1.19066 1.20680 1.15699 1.17855 0.99033 0.88594 0.93120 1.21106 0.98034 0.99344 0.93171 1.20459 1.02330 0.91662 1.01111 1.18981 0.94415 0.88585 0.91222 1.86045 1.72788 1.26419 1.38593 1.23081 1.00029 0.86219 0.94025 1.21789 1.00756 0.96631 1.01051 1.21188 1.05144 1.00297 0.94547 1.20921 0.98243 0.92434 0.99350 0.91237 0.92620 0.93843 0.92049 0.90384 0.90778 0.90737 0.82749 0.85095 0.92645 0.93833 0.92189 0.83760 0.82455 0.91432 0.91742 0.88231 0.91694 0.91469 0.83492 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.91 71.98 0.71 -2.22 16 2 C -0.12 -2.49 5.92 30.59 0.18 -2.31 16 3 C -0.11 -3.17 4.55 29.85 0.14 -3.03 16 4 C -0.05 -1.48 9.58 24.52 0.24 -1.25 16 5 C -0.23 -8.78 8.87 23.42 0.21 -8.57 16 6 C 0.54 23.27 7.06 86.56 0.61 23.88 16 7 O -0.57 -25.33 12.94 -4.12 -0.05 -25.38 16 8 N -0.55 -24.25 2.56 -639.24 -1.63 -25.88 16 9 C 0.22 9.90 3.75 85.63 0.32 10.22 16 10 C -0.54 -29.62 9.59 25.60 0.25 -29.37 16 11 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 12 C 0.02 1.15 5.47 84.66 0.46 1.61 16 13 N -0.94 -56.52 13.96 21.45 0.30 -56.22 16 14 Si 0.94 40.17 27.47 68.60 1.88 42.05 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.23 -8.85 6.54 99.48 0.65 -8.20 16 18 C 0.11 4.39 5.12 38.13 0.20 4.59 16 19 C -0.10 -3.41 9.32 22.38 0.21 -3.20 16 20 C -0.14 -4.23 9.98 22.35 0.22 -4.01 16 21 C 0.11 3.57 6.69 22.50 0.15 3.72 16 22 O -0.32 -8.83 10.14 -93.27 -0.95 -9.78 16 23 C 0.04 0.83 5.46 71.98 0.39 1.22 16 24 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 25 C -0.19 -6.45 9.03 22.35 0.20 -6.25 16 26 C -0.09 -3.64 9.01 22.38 0.20 -3.44 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.62 5.31 -2.39 -0.01 2.60 16 34 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.13 5.18 6.59 -2.91 -0.02 5.16 16 36 H 0.06 2.34 5.70 -2.39 -0.01 2.32 16 37 H 0.04 1.87 6.84 -2.39 -0.02 1.85 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.14 4.47 7.87 -2.91 -0.02 4.45 16 40 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 42 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.15 4.06 6.29 -2.91 -0.02 4.05 16 47 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -69.43 385.15 5.86 -63.57 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.89 Total: 31.38 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 5.43 Total: -19.74 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.34 Total: -82.10 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.00 Total: -35.16 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.88 Total: 42.05 kcal Total: -69.43 5.86 -63.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731192602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.527 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds